Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001730 Solanum tuberosum HOM05D000480 ORTHO05D000313 1.1e-87 326.6 171 100.0
Sopen01g035650 Solanum pennellii HOM05D000448 ORTHO05D000313 2.4e-82 308.9 171 93.0
CAN.G756.41 Capsicum annuum HOM05D000480 ORTHO05D000313 2.0e-65 252.7 172 76.7
Solyc01g088810.4 Solanum lycopersicum HOM05D000480 ORTHO05D000313 5.1e-32 141.7 81 88.9
Lsat_1_v5_gn_1_84340 Lactuca sativa HOM05D000448 ORTHO05D000313 5.7e-15 85.1 148 37.8
HanXRQChr01g0017701 Helianthus annuus HOM05D000480 ORTHO05D000313 4.1e-13 79.0 186 30.1
PGSC0003DMG400031161 Solanum tuberosum HOM05D000448 ORTHO05D000291 1.2e-12 77.4 158 35.4
Actinidia04972 Actinidia chinensis HOM05D000448 ORTHO05D000291 1.5e-12 77.0 150 33.3
PGSC0003DMG400031158 Solanum tuberosum HOM05D000448 ORTHO05D000291 1.5e-12 77.0 141 34.8
Hma1.2p1_0632F.1_g192440 Hydrangea macrophylla HOM05D000448 ORTHO05D000313 2.6e-12 76.3 151 36.4
ECA248G3422 Erigeron canadensis HOM05D000480 ORTHO05D000313 4.5e-12 75.5 172 32.6
TWI14G0350 Tripterygium wilfordii HOM05D000448 ORTHO05D000313 5.8e-12 75.1 138 36.2
CAN.G756.43 Capsicum annuum HOM05D000480 ORTHO05D000313 2.2e-11 73.2 129 35.7
CAN.G1585.3 Capsicum annuum HOM05D000480 ORTHO05D000313 5.0e-11 72.0 173 30.1
Migut.N01729 Erythranthe guttata HOM05D000480 ORTHO05D000313 5.0e-11 72.0 153 32.7
Actinidia19328 Actinidia chinensis HOM05D000448 ORTHO05D000291 6.5e-11 71.6 148 33.8
Cc02_g25360 Coffea canephora HOM05D000480 ORTHO05D000313 8.4e-11 71.2 181 29.8
Oeu037434.1 Olea europaea HOM05D000480 ORTHO05D000313 8.4e-11 71.2 127 33.1
CAN.G1585.2 Capsicum annuum HOM05D000480 ORTHO05D000313 1.4e-10 70.5 141 32.6
CAN.G756.50 Capsicum annuum HOM05D000480 ORTHO05D000313 1.4e-10 70.5 141 32.6
CAN.G756.55 Capsicum annuum HOM05D000480 ORTHO05D000313 1.4e-10 70.5 141 32.6
Lj7A549T55 Lonicera japonica HOM05D000480 ORTHO05D000313 1.4e-10 70.5 188 28.2
CAN.G756.52 Capsicum annuum HOM05D000480 ORTHO05D000313 1.9e-10 70.1 141 32.6
Lsat_1_v5_gn_1_84001 Lactuca sativa HOM05D000480 ORTHO05D000313 1.9e-10 70.1 151 32.5
Lj7A549T57 Lonicera japonica HOM05D000448 ORTHO05D000313 1.9e-10 70.1 190 28.4
Nn8g40300 Nelumbo nucifera HOM05D000480 ORTHO05D000313 1.9e-10 70.1 127 37.0
PGSC0003DMG400001698 Solanum tuberosum HOM05D000480 ORTHO05D000313 1.9e-10 70.1 132 35.6
Potri.012G113800 Populus trichocarpa HOM05D000480 ORTHO05D000313 2.5e-10 69.7 129 31.8
SGA_v2.0_scaffold77G25266 Striga asiatica HOM05D000448 ORTHO05D000291 3.2e-10 69.3 158 31.6
MSTRG.4939 Avicennia marina HOM05D000480 ORTHO05D000313 4.2e-10 68.9 138 33.3
Sp4g26800 Schrenkiella parvula HOM05D000480 ORTHO05D000313 4.2e-10 68.9 124 37.1
PGSC0003DMG400031160 Solanum tuberosum HOM05D000448 ORTHO05D000291 7.1e-10 68.2 172 32.0
Migut.N01728 Erythranthe guttata HOM05D000480 ORTHO05D000313 9.3e-10 67.8 170 28.8
Carub.0004s2730 Capsella rubella HOM05D000480 ORTHO05D000313 1.2e-09 67.4 140 34.3
FvH4_7g26641 Fragaria vesca HOM05D000448 ORTHO05D000291 1.2e-09 67.4 147 34.7
PGSC0003DMG400031164 Solanum tuberosum HOM05D000480 ORTHO05D000313 1.2e-09 67.4 142 34.5
CAN.G2133.2 Capsicum annuum HOM05D000480 ORTHO05D000313 1.6e-09 67.0 120 34.2
CAN.G756.48 Capsicum annuum HOM05D000480 ORTHO05D000313 1.6e-09 67.0 120 34.2
CARHR139950 Cardamine hirsuta HOM05D000480 ORTHO05D000313 1.6e-09 67.0 130 36.2
Nitab4.5_0000563g0170 Nicotiana tabacum HOM05D000480 ORTHO05D000313 1.6e-09 67.0 131 34.4
Nitab4.5_0007060g0010 Nicotiana tabacum HOM05D000480 ORTHO05D000313 1.6e-09 67.0 132 34.8
PGSC0003DMG400031159 Solanum tuberosum HOM05D000480 ORTHO05D000313 1.6e-09 67.0 172 31.4
PGSC0003DMG400031162 Solanum tuberosum HOM05D000480 ORTHO05D000313 1.6e-09 67.0 172 31.4
Cpa.g.sc13.225 Carica papaya HOM05D000480 ORTHO05D000313 2.1e-09 66.6 145 30.3
FAN06G3867 Fragaria x ananassa HOM05D000480 ORTHO05D000313 2.1e-09 66.6 147 34.7
Sopen01g035670 Solanum pennellii HOM05D000480 ORTHO05D000313 2.1e-09 66.6 179 31.3
MSTRG.13297 Avicennia marina HOM05D000480 ORTHO05D000313 2.7e-09 66.2 134 33.6
Eucgr.D01209 Eucalyptus grandis HOM05D000480 ORTHO05D000313 2.7e-09 66.2 150 30.7
PGR004G1040 Punica granatum HOM05D000480 ORTHO05D000313 2.7e-09 66.2 169 29.0
SalBow5G3292 Salvia bowleyana HOM05D000480 ORTHO05D000313 3.5e-09 65.9 152 28.9
SalBow5G3723 Salvia bowleyana HOM05D000480 ORTHO05D000313 3.5e-09 65.9 152 28.9
PGSC0003DMG400001697 Solanum tuberosum HOM05D000480 ORTHO05D000313 3.5e-09 65.9 161 31.1
BolC4t22202H Brassica oleracea HOM05D000480 ORTHO05D000313 4.6e-09 65.5 158 33.5
FvH4_7g26642 Fragaria vesca HOM05D000448 ORTHO05D000313 6.1e-09 65.1 147 34.7
Cpa.g.sc13.223 Carica papaya HOM05D000480 ORTHO05D000313 7.9e-09 64.7 127 32.3
FvH4_7g26700 Fragaria vesca HOM05D000448 ORTHO05D000313 7.9e-09 64.7 135 34.1
FAN06G3463 Fragaria x ananassa HOM05D000480 ORTHO05D000313 7.9e-09 64.7 135 34.1
Solyc01g088830.2 Solanum lycopersicum HOM05D000480 ORTHO05D000313 7.9e-09 64.7 175 30.9
FAN10G0589 Fragaria x ananassa HOM05D000448 ORTHO05D000291 1.0e-08 64.3 147 33.3
Sabra14G0052400 Salix brachista HOM05D000448 ORTHO05D000291 1.0e-08 64.3 151 33.8
Cc02_g25350 Coffea canephora HOM05D000448 ORTHO05D000291 1.3e-08 63.9 106 37.7
Manes.06G129901 Manihot esculenta HOM05D000448 ORTHO05D000291 1.3e-08 63.9 151 34.4
GSVIVG01024471001 Vitis vinifera HOM05D000480 ORTHO05D000313 1.3e-08 63.9 173 28.3
BcaC02g12275 Brassica carinata HOM05D000480 ORTHO05D000313 1.8e-08 63.5 158 32.9
C04p05720 Brassica napus HOM05D000480 ORTHO05D000313 1.8e-08 63.5 158 32.9
FAN01G0752 Fragaria x ananassa HOM05D000480 ORTHO05D000313 1.8e-08 63.5 140 32.9
FAN03G2598 Fragaria x ananassa HOM05D000480 ORTHO05D000313 1.8e-08 63.5 138 29.7
TAR375G1115 Trochodendron aralioides HOM05D000480 ORTHO05D000313 1.8e-08 63.5 136 33.8
A05p04900 Brassica napus HOM05D000480 ORTHO05D000313 2.3e-08 63.2 159 32.7
BraA05t19464Z Brassica rapa HOM05D000480 ORTHO05D000313 2.3e-08 63.2 159 32.7
Potri.015G111300 Populus trichocarpa HOM05D000448 ORTHO05D000313 2.3e-08 63.2 129 30.2
ECA248G2383 Erigeron canadensis HOM05D000480 ORTHO05D000313 3.0e-08 62.8 157 28.7
Actinidia25362 Actinidia chinensis HOM05D000480 ORTHO05D000313 3.9e-08 62.4 115 34.8
Cfa013603 Carpinus fangiana HOM05D000480 ORTHO05D000313 5.1e-08 62.0 129 32.6
Haze_22225 Corylus avellana HOM05D004991 ORTHO05D006690 5.1e-08 62.0 129 32.6
Prupe.2G270500 Prunus persica HOM05D000448 ORTHO05D000313 5.1e-08 62.0 109 34.9
PGR004G0158 Punica granatum HOM05D000480 ORTHO05D000313 5.1e-08 62.0 156 30.1
PSO782G5375 Papaver somniferum HOM05D000480 ORTHO05D000313 6.7e-08 61.6 151 34.4
BcaB02g08854 Brassica carinata HOM05D000480 ORTHO05D000313 8.7e-08 61.2 159 32.1
PGR146G0003 Punica granatum HOM05D000480 ORTHO05D000313 8.7e-08 61.2 124 33.1
QL04p028629 Quercus lobata HOM05D000448 ORTHO05D000291 8.7e-08 61.2 129 33.3
Sabra12G0082900 Salix brachista HOM05D000480 ORTHO05D000313 8.7e-08 61.2 129 31.0
Thecc.03G145400 Theobroma cacao HOM05D000480 ORTHO05D000313 8.7e-08 61.2 131 32.8
Nn1g09256 Nelumbo nucifera HOM05D000480 ORTHO05D000313 1.1e-07 60.8 124 30.6
ECA248G1667 Erigeron canadensis HOM05D000480 ORTHO05D000313 1.5e-07 60.5 161 29.8
Lsat_1_v5_gn_1_84300 Lactuca sativa HOM05D000480 ORTHO05D000313 1.5e-07 60.5 94 38.3
Cc02_g25340 Coffea canephora HOM05D000480 ORTHO05D000313 1.9e-07 60.1 135 33.3
FvH4_7g26643 Fragaria vesca HOM05D000480 ORTHO05D000313 1.9e-07 60.1 121 31.4
Nn7g38168 Nelumbo nucifera HOM05D000448 ORTHO05D000291 1.9e-07 60.1 130 33.1
Thecc.03G145500 Theobroma cacao HOM05D000480 ORTHO05D000313 1.9e-07 60.1 143 31.5
Ciclev10033865m.g Citrus clementina HOM05D000448 ORTHO05D000313 3.3e-07 59.3 129 32.6
MD12G1231200 Malus domestica HOM05D000480 ORTHO05D000313 3.3e-07 59.3 149 28.9
Oeu037431.2 Olea europaea HOM05D000480 ORTHO05D000313 3.3e-07 59.3 129 28.7
QL04p028872 Quercus lobata HOM05D000448 ORTHO05D000291 3.3e-07 59.3 127 30.7
Atru.chr6.1977 Acer truncatum HOM05D000448 ORTHO05D000313 4.3e-07 58.9 130 30.8
PGR004G0706 Punica granatum HOM05D000480 ORTHO05D000313 4.3e-07 58.9 169 28.4
Thecc.01G399700 Theobroma cacao HOM05D000448 ORTHO05D000291 4.3e-07 58.9 147 29.9
Oeu037433.1 Olea europaea HOM05D000480 ORTHO05D000313 5.7e-07 58.5 165 29.7
Prupe.2G270400 Prunus persica HOM05D000480 ORTHO05D000313 5.7e-07 58.5 124 31.5
QL04p028764 Quercus lobata HOM05D000448 ORTHO05D000291 5.7e-07 58.5 129 32.6
CANSAT56G2348 Cannabis sativa HOM05D000480 ORTHO05D000313 7.4e-07 58.2 128 32.8
Eucgr.D01200 Eucalyptus grandis HOM05D000448 ORTHO05D000291 7.4e-07 58.2 140 30.7
Eucgr.D01212 Eucalyptus grandis HOM05D000480 ORTHO05D000313 7.4e-07 58.2 154 34.4
Glyma.18G247600 Glycine max HOM05D000448 ORTHO05D000291 7.4e-07 58.2 121 31.4
RcHm_v2.0_Chr1g0373271 Rosa chinensis HOM05D000448 ORTHO05D000313 9.7e-07 57.8 146 30.8
TAR375G0007 Trochodendron aralioides HOM05D000448 ORTHO05D000291 9.7e-07 57.8 98 37.8
Cfa011049 Carpinus fangiana HOM05D000448 ORTHO05D000291 1.3e-06 57.4 147 32.7
COL.COLO4_37309 Corchorus olitorius HOM05D000448 ORTHO05D000291 1.3e-06 57.4 129 32.6
Duzib268G1481 Durio zibethinus HOM05D000448 ORTHO05D000291 1.3e-06 57.4 127 30.7
Potri.014G050800 Populus trichocarpa HOM05D000448 ORTHO05D000291 1.3e-06 57.4 163 32.5
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.6e-06 57.0 116 29.3
Hma1.2p1_1623F.1_g294110 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 1.6e-06 57.0 149 31.5
TAR375G0700 Trochodendron aralioides HOM05D000480 ORTHO05D000313 1.6e-06 57.0 116 33.6
FAN10G1807 Fragaria x ananassa HOM05D000480 ORTHO05D000313 2.2e-06 56.6 119 34.5
MD01G1175400 Malus domestica HOM05D000480 ORTHO05D000313 2.2e-06 56.6 122 32.8
Lj7A549T53 Lonicera japonica HOM05D000448 ORTHO05D000313 2.8e-06 56.2 103 33.0
COL.COLO4_12381 Corchorus olitorius HOM05D000448 ORTHO05D000291 3.7e-06 55.8 128 31.2
FAN10G1476 Fragaria x ananassa HOM05D000480 ORTHO05D000313 3.7e-06 55.8 114 32.5
Hma1.2p1_2969F.1_g331020 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 3.7e-06 55.8 148 30.4
MD12G1230900 Malus domestica HOM05D000480 ORTHO05D000313 3.7e-06 55.8 123 29.3
PGR004G0350 Punica granatum HOM05D000480 ORTHO05D000313 3.7e-06 55.8 112 33.0
Thecc.01G398500 Theobroma cacao HOM05D000448 ORTHO05D000291 3.7e-06 55.8 147 28.6
Nn5g28713 Nelumbo nucifera HOM05D000448 ORTHO05D000291 4.8e-06 55.5 129 32.6
RcHm_v2.0_Chr1g0373281 Rosa chinensis HOM05D000480 ORTHO05D000313 4.8e-06 55.5 150 28.0
Duzib138G0994 Durio zibethinus HOM05D000480 ORTHO05D000291 8.2e-06 54.7 150 28.7
Glyma.18G247650 Glycine max HOM05D000448 ORTHO05D000291 8.2e-06 54.7 122 30.3
PGR004G2256 Punica granatum HOM05D000448 ORTHO05D000291 8.2e-06 54.7 136 32.4
QL04p028736 Quercus lobata HOM05D000448 ORTHO05D000291 8.2e-06 54.7 137 30.7
QL04p028951 Quercus lobata HOM05D000448 ORTHO05D000291 8.2e-06 54.7 146 31.5


User provided reference genes

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