Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 8.6e-96 353.6 173 100.0
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 1.8e-93 345.9 173 97.7
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 1.2e-92 343.2 171 97.7
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 1.1e-85 320.1 173 92.5
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.4e-85 319.7 173 90.8
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 1.5e-84 316.2 174 89.7
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.7e-83 312.8 175 89.7
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 8.1e-70 267.3 163 77.3
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 1.1e-66 256.9 170 71.2
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 9.3e-66 253.8 163 75.5
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 2.7e-65 252.3 163 75.5
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 3.5e-65 251.9 163 75.5
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 7.9e-65 250.8 163 73.0
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.9e-63 246.1 171 69.0
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 7.4e-63 244.2 163 71.8
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 9.6e-63 243.8 163 71.8
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 1.6e-62 243.0 163 72.4
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.6e-62 243.0 163 71.2
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 2.8e-62 242.3 163 71.8
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 3.7e-62 241.9 167 70.1
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 1.8e-61 239.6 166 70.5
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 3.1e-61 238.8 163 71.2
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 3.1e-61 238.8 162 72.2
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 3.1e-61 238.8 170 65.9
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 6.9e-61 237.7 165 68.5
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 6.9e-61 237.7 163 70.6
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 9.0e-61 237.3 170 67.6
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 2.0e-60 236.1 162 69.8
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 4.5e-60 235.0 163 68.1
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 4.5e-60 235.0 164 69.5
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.0e-59 233.8 163 69.9
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 1.3e-59 233.4 163 66.9
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 6.5e-59 231.1 163 69.3
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 1.2e-57 226.9 162 66.7
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 1.2e-57 226.9 163 67.5
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 2.7e-57 225.7 163 67.5
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 2.7e-57 225.7 170 65.9
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 3.5e-57 225.3 163 65.6
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 3.5e-57 225.3 162 70.4
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 6.0e-57 224.6 163 66.9
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.0e-56 223.8 166 66.9
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 2.3e-56 222.6 162 67.9
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 3.0e-56 222.2 162 70.4
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 5.1e-56 221.5 164 67.1
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 5.1e-56 221.5 162 68.5
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 5.1e-56 221.5 164 66.5
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 5.1e-56 221.5 164 65.2
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 1.1e-55 220.3 167 66.5
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 1.5e-55 219.9 162 67.9
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 1.9e-55 219.5 165 64.2
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 2.5e-55 219.2 163 65.6
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 2.5e-55 219.2 162 68.5
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 5.7e-55 218.0 163 65.6
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 9.6e-55 217.2 156 69.9
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 9.6e-55 217.2 167 67.1
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 1.6e-54 216.5 163 65.0
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 8.2e-54 214.2 162 63.0
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.1e-53 213.8 162 63.6
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 1.1e-53 213.8 163 66.3
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 1.8e-53 213.0 167 61.7
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.1e-53 212.2 166 65.1
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 4.1e-53 211.8 166 64.5
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 6.9e-53 211.1 162 60.5
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.5e-52 209.9 166 64.5
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 4.5e-52 208.4 163 65.0
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 5.8e-52 208.0 162 61.7
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.0e-51 207.2 162 63.0
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 1.0e-51 207.2 162 64.2
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 1.3e-51 206.8 167 64.1
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 2.2e-51 206.1 163 63.8
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 2.9e-51 205.7 162 64.8
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 5.0e-51 204.9 162 61.7
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 8.4e-51 204.1 165 61.8
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 1.1e-50 203.8 163 66.3
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.1e-50 203.8 163 66.3
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.9e-50 203.0 162 60.5
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.5e-50 202.6 163 65.0
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 5.5e-50 201.4 163 65.0
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 9.3e-50 200.7 163 65.0
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 1.2e-49 200.3 158 63.9
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 6.1e-49 198.0 165 62.4
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 1.8e-48 196.4 163 64.4
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 1.8e-48 196.4 161 59.6
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 2.3e-48 196.1 163 63.8
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 6.7e-48 194.5 163 64.4
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 8.7e-48 194.1 165 60.0
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.1e-47 193.7 169 59.2
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.9e-47 193.0 165 62.4
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 3.3e-47 192.2 165 59.4
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 4.3e-47 191.8 130 70.8
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 4.3e-47 191.8 153 60.8
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 7.4e-47 191.0 165 59.4
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 7.4e-47 191.0 173 62.4
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 9.7e-47 190.7 157 61.1
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 9.7e-47 190.7 166 60.2
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 9.7e-47 190.7 166 60.2
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.3e-46 190.3 165 58.8
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 1.3e-46 190.3 166 60.2
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.2e-46 189.5 162 59.3
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 4.8e-46 188.3 166 59.6
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 6.3e-46 188.0 166 59.6
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 8.2e-46 187.6 158 59.5
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 1.4e-45 186.8 166 59.0
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 6.9e-45 184.5 167 57.5
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 2.0e-44 183.0 167 56.9
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.0e-44 183.0 165 59.4
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 2.6e-44 182.6 144 60.4
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 7.2e-42 174.5 163 57.7
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 7.2e-42 174.5 166 56.6
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 3.6e-41 172.2 125 64.8
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 3.6e-41 172.2 161 57.1
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 6.1e-41 171.4 130 69.2
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 1.8e-40 169.9 165 55.8
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 1.8e-40 169.9 165 55.8
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 4.3e-39 165.2 166 53.6
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 2.2e-38 162.9 126 62.7
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.8e-38 162.5 165 55.2
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 1.4e-37 160.2 161 54.0
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.8e-37 159.8 165 54.5
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 5.3e-37 158.3 165 53.9
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.9e-37 157.9 126 64.3
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.9e-35 152.5 123 57.7
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 1.4e-34 150.2 161 50.9
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 9.4e-34 147.5 131 49.6
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.2e-33 147.1 165 49.7
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 2.7e-33 146.0 164 43.9
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 3.0e-32 142.5 70 98.6
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 6.7e-32 141.4 73 94.5
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 8.8e-32 141.0 169 49.1
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 9.7e-31 137.5 112 58.9
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 1.7e-30 136.7 130 54.6
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 3.7e-30 135.6 167 49.1
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 4.8e-30 135.2 164 47.6
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 4.8e-30 135.2 100 60.0
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.1e-29 134.0 161 46.6
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 4.1e-29 132.1 154 46.8
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 9.1e-29 131.0 127 55.9
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.5e-28 130.2 159 48.4
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 6.5e-27 124.8 117 51.3
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 7.2e-26 121.3 127 45.7
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 2.7e-25 119.4 121 47.9
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 6.1e-25 118.2 138 42.8
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 4.0e-24 115.5 90 63.3
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 3.7e-22 109.0 148 42.6
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 8.2e-22 107.8 77 64.9
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 1.6e-20 103.6 80 60.0
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 1.6e-17 93.6 63 65.1
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 1.2e-15 87.4 63 61.9
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.2e-14 83.2 89 46.1
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.8e-14 82.8 91 52.7
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 1.1e-13 80.9 67 64.2
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 1.1e-13 80.9 80 55.0
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 7.0e-13 78.2 78 53.8
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 9.1e-13 77.8 61 68.9
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.5e-12 75.9 60 66.7
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 7.7e-12 74.7 56 69.6
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 7.7e-12 74.7 56 69.6
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.7e-11 73.6 63 61.9
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 2.2e-11 73.2 61 59.0
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 9.4e-10 67.8 105 38.1
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 4.7e-09 65.5 71 45.1
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 8.0e-09 64.7 61 45.9
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 1.2e-07 60.8 60 53.3
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 5.7e-07 58.5 66 40.9
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.7e-06 57.0 44 56.8


User provided reference genes

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