Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 1.1e-262 909.4 468 100.0
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 2.0e-232 808.9 468 90.8
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 1.9e-230 802.4 468 90.2
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 2.8e-205 718.8 469 81.2
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 6.2e-197 691.0 468 79.7
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 2.4e-193 679.1 423 84.9
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 5.1e-175 618.2 469 72.3
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 5.1e-167 591.7 517 63.8
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 5.4e-161 571.6 482 64.1
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 7.9e-160 567.8 486 64.2
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 1.4e-156 557.0 437 67.3
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 2.4e-156 556.2 482 64.1
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 1.0e-154 550.8 470 64.5
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 1.1e-153 547.4 398 70.6
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 1.6e-152 543.5 508 60.0
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 1.0e-151 540.8 481 62.8
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 1.9e-150 536.6 477 63.1
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 5.7e-150 535.0 470 63.0
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 2.1e-149 533.1 480 60.4
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 3.7e-149 532.3 480 60.0
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 4.8e-149 531.9 477 62.7
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 2.4e-148 529.6 414 67.4
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 4.0e-148 528.9 487 61.0
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 6.9e-148 528.1 477 60.6
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 1.5e-147 526.9 469 61.2
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 2.6e-147 526.2 475 61.5
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 5.8e-147 525.0 470 61.5
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 5.8e-147 525.0 483 60.0
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 7.6e-147 524.6 474 61.0
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 1.3e-146 523.9 487 61.2
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 4.9e-146 521.9 477 61.0
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 6.5e-146 521.5 473 60.3
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 8.4e-146 521.2 474 61.8
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 8.4e-146 521.2 477 60.6
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 1.4e-145 520.4 466 62.2
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 1.4e-145 520.4 472 60.6
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 4.2e-145 518.8 479 61.0
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 5.5e-145 518.5 473 60.5
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 7.1e-145 518.1 477 60.8
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 7.1e-145 518.1 337 76.0
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 9.3e-145 517.7 495 59.2
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 2.7e-144 516.2 443 64.1
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 2.7e-144 516.2 425 64.7
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 4.6e-144 515.4 487 60.4
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 6.1e-144 515.0 470 60.4
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 7.9e-144 514.6 476 59.2
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 1.0e-143 514.2 485 59.0
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 1.8e-143 513.5 386 68.4
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 8.7e-143 511.1 477 59.5
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 8.7e-143 511.1 417 65.7
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 1.1e-142 510.8 401 66.8
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 1.5e-142 510.4 486 59.5
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 3.3e-142 509.2 487 59.5
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 5.7e-142 508.4 407 66.6
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 1.3e-141 507.3 474 58.0
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 2.8e-141 506.1 484 59.1
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 2.8e-141 506.1 479 59.3
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 3.7e-141 505.8 480 60.6
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 1.4e-140 503.8 401 65.6
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.8e-140 503.4 474 58.2
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 2.4e-140 503.1 481 58.4
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 1.0e-138 497.7 477 57.9
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 1.0e-138 497.7 403 65.3
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 1.3e-138 497.3 469 58.8
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 4.2e-137 492.3 500 57.4
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 1.6e-136 490.3 412 64.3
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 3.6e-136 489.2 394 64.0
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 5.1e-135 485.3 399 63.9
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 6.7e-135 485.0 475 57.7
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 6.7e-135 485.0 416 61.1
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 8.8e-135 484.6 402 63.9
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 1.1e-134 484.2 401 64.1
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 7.4e-134 481.5 403 63.3
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 2.8e-133 479.6 448 59.2
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 4.8e-133 478.8 478 57.3
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 8.2e-133 478.0 475 56.8
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 1.8e-132 476.9 471 55.4
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 3.1e-132 476.1 429 59.4
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 2.6e-131 473.0 457 58.4
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 7.7e-131 471.5 474 56.3
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 7.7e-131 471.5 476 56.9
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 1.0e-130 471.1 470 56.4
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 3.8e-130 469.2 388 62.6
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 6.5e-130 468.4 398 62.8
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 1.4e-129 467.2 492 53.9
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 7.2e-129 464.9 471 56.1
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 1.2e-128 464.2 465 55.5
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 2.7e-128 463.0 376 63.6
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 2.7e-128 463.0 467 54.8
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 3.6e-128 462.6 500 54.8
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 1.8e-127 460.3 467 56.3
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 5.1e-127 458.8 467 54.8
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 1.1e-126 457.6 467 54.2
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 2.6e-126 456.4 383 61.9
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 1.2e-123 447.6 373 63.3
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 1.2e-123 447.6 373 63.3
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 2.0e-123 446.8 382 60.7
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 5.9e-123 445.3 331 66.5
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 1.3e-122 444.1 302 72.2
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 2.9e-122 443.0 331 66.2
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 6.5e-122 441.8 333 67.3
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 8.0e-120 434.9 337 65.0
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 2.3e-119 433.3 341 69.5
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 2.8e-117 426.4 376 60.9
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 2.9e-114 416.4 479 52.6
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 2.0e-110 403.7 355 63.4
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 1.6e-107 394.0 272 69.1
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 3.5e-107 392.9 362 61.0
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 3.4e-102 376.3 280 70.0
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 8.6e-98 361.7 381 49.9
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 3.0e-95 353.2 396 48.7
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 4.0e-95 352.8 326 62.0
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 6.3e-93 345.5 245 69.4
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 5.9e-91 339.0 373 48.8
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 4.3e-89 332.8 242 68.2
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 1.7e-85 320.9 368 48.6
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 2.0e-83 313.9 346 56.1
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 5.0e-82 309.3 201 75.6
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 5.2e-79 299.3 273 54.9
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 1.2e-70 271.6 288 52.1
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 1.2e-67 261.5 283 50.9
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 2.1e-67 260.8 290 47.9
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 1.9e-65 254.2 340 42.4
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 4.3e-65 253.1 273 49.5
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 9.6e-65 251.9 186 65.1
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 3.1e-55 220.3 197 59.9
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 3.4e-54 216.9 238 52.1
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 8.1e-48 195.7 204 53.4
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 2.9e-37 160.6 233 48.9
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 1.9e-33 147.9 288 35.8
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 3.4e-30 137.1 121 59.5
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 2.5e-28 131.0 83 74.7
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 2.3e-26 124.4 84 72.6
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 3.9e-26 123.6 76 73.7
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 1.4e-20 105.1 72 70.8
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 6.1e-19 99.8 72 68.1
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 6.3e-16 89.7 117 49.6
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 6.3e-16 89.7 99 52.5
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 3.3e-09 67.4 92 50.0
MSTRG.17096 Avicennia marina HOM05D005239 ORTHO05D006698 3.5e-06 57.4 34 82.4


User provided reference genes

Program Settings