Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001657 Solanum tuberosum HOM05D002226 ORTHO05D002287 8.8e-66 253.4 125 100.0
Solyc01g110500.3 Solanum lycopersicum HOM05D002226 ORTHO05D002287 3.3e-57 224.9 128 89.1
Sopen01g052630 Solanum pennellii HOM05D002226 ORTHO05D002287 5.3e-55 217.6 128 88.3
CAN.G1329.3 Capsicum annuum HOM05D002226 ORTHO05D002287 1.7e-48 196.1 131 77.9
Sopen01g052640 Solanum pennellii HOM05D002226 ORTHO05D002287 9.8e-41 170.2 127 74.0
Solyc01g110510.3 Solanum lycopersicum HOM05D002226 ORTHO05D002287 2.8e-40 168.7 127 72.4
PGSC0003DMG400040387 Solanum tuberosum HOM05D002226 ORTHO05D002287 5.9e-38 161.0 127 70.1
Peaxi162Scf00658g00726 Petunia axillaris HOM05D002226 ORTHO05D002287 1.7e-37 159.5 138 66.7
Nitab4.5_0000065g0030 Nicotiana tabacum HOM05D002226 ORTHO05D002287 1.1e-23 113.6 129 54.3
Nitab4.5_0001719g0020 Nicotiana tabacum HOM05D002226 ORTHO05D002287 5.4e-23 111.3 125 54.4
Cc02_g07880 Coffea canephora HOM05D002226 ORTHO05D002287 1.6e-14 83.2 131 41.2
Hma1.2p1_0493F.1_g164790 Hydrangea macrophylla HOM05D002226 ORTHO05D002287 1.0e-13 80.5 141 39.7
Lj1A937T95 Lonicera japonica HOM05D002226 ORTHO05D002287 3.9e-13 78.6 124 41.1
QL08p059826 Quercus lobata HOM05D002226 ORTHO05D002287 5.1e-13 78.2 129 40.3
MD01G1133800 Malus domestica HOM05D002226 ORTHO05D002287 3.3e-12 75.5 130 39.2
Oeu064383.1 Olea europaea HOM05D002226 ORTHO05D002287 7.3e-12 74.3 124 42.7
RcHm_v2.0_Chr1g0367051 Rosa chinensis HOM05D002226 ORTHO05D002287 7.3e-12 74.3 125 37.6
FAN03G1564 Fragaria x ananassa HOM05D002226 ORTHO05D002287 9.5e-12 73.9 125 38.4
Prupe.2G235100 Prunus persica HOM05D002226 ORTHO05D002287 9.5e-12 73.9 128 36.7
FAN01G0784 Fragaria x ananassa HOM05D002226 ORTHO05D002287 1.2e-11 73.6 126 38.1
FAN01G2232 Fragaria x ananassa HOM05D002226 ORTHO05D002287 1.2e-11 73.6 126 38.1
DCAR_027632 Daucus carota HOM05D002226 ORTHO05D002287 2.1e-11 72.8 131 34.4
FAN06G1237 Fragaria x ananassa HOM05D002226 ORTHO05D002287 2.1e-11 72.8 126 38.1
Sabra08G0040200 Salix brachista HOM05D002226 ORTHO05D002287 2.1e-11 72.8 135 35.6
FvH4_7g22420 Fragaria vesca HOM05D002226 ORTHO05D002287 3.6e-11 72.0 126 38.1
Potri.008G055600 Populus trichocarpa HOM05D002226 ORTHO05D002287 3.6e-11 72.0 129 38.0
Thecc.09G322500 Theobroma cacao HOM05D002226 ORTHO05D002287 4.7e-11 71.6 70 54.3
COL.COLO4_18505 Corchorus olitorius HOM05D002226 ORTHO05D002287 1.1e-10 70.5 70 54.3
Atru.chr3.3895 Acer truncatum HOM05D002226 ORTHO05D002287 1.8e-10 69.7 74 52.7
PGR044G1567 Punica granatum HOM05D002226 ORTHO05D002287 3.1e-10 68.9 125 37.6
Cc01_g12790 Coffea canephora HOM05D002226 ORTHO05D002287 4.0e-10 68.6 70 51.4
QL01p032206 Quercus lobata HOM05D002226 ORTHO05D002287 4.0e-10 68.6 82 47.6
Migut.F01509 Erythranthe guttata HOM05D002226 ORTHO05D002287 5.2e-10 68.2 138 35.5
vmacro03076 Vaccinium macrocarpon HOM05D002226 ORTHO05D002287 8.9e-10 67.4 74 51.4
FvH4_3g35980 Fragaria vesca HOM05D002226 ORTHO05D002287 1.2e-09 67.0 70 51.4
FAN11G2628 Fragaria x ananassa HOM05D002226 ORTHO05D002287 1.2e-09 67.0 70 51.4
FAN25G1716 Fragaria x ananassa HOM05D002226 ORTHO05D002287 1.2e-09 67.0 70 51.4
Manes.11G131000 Manihot esculenta HOM05D002226 ORTHO05D002287 1.2e-09 67.0 81 46.9
TAR369G0860 Trochodendron aralioides HOM05D002226 ORTHO05D002287 1.2e-09 67.0 111 36.0
FAN16G0509 Fragaria x ananassa HOM05D002226 ORTHO05D002287 1.5e-09 66.6 70 51.4
Rhsim13G0083100 Rhododendron simsii HOM05D002226 ORTHO05D002287 1.5e-09 66.6 73 52.1
Lj1C154T2 Lonicera japonica HOM05D002226 ORTHO05D002287 2.6e-09 65.9 71 47.9
PGSC0003DMG400000393 Solanum tuberosum HOM05D002226 ORTHO05D002287 2.6e-09 65.9 92 40.2
Ciclev10028791m.g Citrus clementina HOM05D002226 ORTHO05D002287 3.4e-09 65.5 70 51.4
Manes.10G030500 Manihot esculenta HOM05D002226 ORTHO05D002287 3.4e-09 65.5 132 35.6
Cpa.g.sc81.157 Carica papaya HOM05D002226 ORTHO05D002287 4.4e-09 65.1 79 46.8
Ciclev10032416m.g Citrus clementina HOM05D002226 ORTHO05D002287 5.8e-09 64.7 126 37.3
Nn2g10376 Nelumbo nucifera HOM05D002226 ORTHO05D002287 5.8e-09 64.7 104 37.5
TAR625G0379 Trochodendron aralioides HOM05D002226 ORTHO05D002287 5.8e-09 64.7 74 47.3
Cfa011495 Carpinus fangiana HOM05D002226 ORTHO05D002287 7.5e-09 64.3 75 52.0
Haze_24089 Corylus avellana HOM05D002226 ORTHO05D002287 7.5e-09 64.3 75 53.3
Dinv03049 Davidia involucrata HOM05D002226 ORTHO05D002287 7.5e-09 64.3 133 34.6
FAN21G1346 Fragaria x ananassa HOM05D002226 ORTHO05D002287 7.5e-09 64.3 70 50.0
CSS0020270 Camellia sinensis var. sinensis HOM05D002226 ORTHO05D002287 9.9e-09 63.9 125 33.6
Gohir.A03G041900 Gossypium hirsutum HOM05D002226 ORTHO05D002287 9.9e-09 63.9 74 50.0
Duzib168G0866 Durio zibethinus HOM05D002226 ORTHO05D002287 1.3e-08 63.5 70 50.0
SalBow6G5144 Salvia bowleyana HOM05D002226 ORTHO05D002287 1.3e-08 63.5 59 57.6
TWI31G1046 Tripterygium wilfordii HOM05D002226 ORTHO05D002287 1.3e-08 63.5 73 50.7
CSS0049179 Camellia sinensis var. sinensis HOM05D002226 ORTHO05D002287 1.7e-08 63.2 71 49.3
SGA_v2.0_scaffold230G43404 Striga asiatica HOM05D002226 ORTHO05D002287 1.7e-08 63.2 55 54.5
PGR102G1897 Punica granatum HOM05D002226 ORTHO05D002287 2.2e-08 62.8 79 45.6
HanXRQChr08g0234781 Helianthus annuus HOM05D002226 ORTHO05D002287 2.9e-08 62.4 72 50.0
MD03G1095100 Malus domestica HOM05D002226 ORTHO05D002287 2.9e-08 62.4 75 49.3
Gorai.003G132300 Gossypium raimondii HOM05D002226 ORTHO05D002287 3.7e-08 62.0 75 49.3
Duzib150G1147 Durio zibethinus HOM05D002226 ORTHO05D002287 4.9e-08 61.6 66 51.5
Duzib128G1425 Durio zibethinus HOM05D002226 ORTHO05D002287 6.4e-08 61.2 132 35.6
Actinidia07039 Actinidia chinensis HOM05D002226 ORTHO05D002287 8.3e-08 60.8 71 49.3
Duzib114G0820 Durio zibethinus HOM05D002226 ORTHO05D002287 8.3e-08 60.8 136 33.8
Lj2C1062G4 Lonicera japonica HOM05D002226 ORTHO05D002287 8.3e-08 60.8 110 35.5
ECA247G1299 Erigeron canadensis HOM05D002226 ORTHO05D002287 1.1e-07 60.5 76 46.1
Gohir.A05G095900 Gossypium hirsutum HOM05D002226 ORTHO05D002287 1.1e-07 60.5 57 54.4
Gohir.D03G126100 Gossypium hirsutum HOM05D002226 ORTHO05D002287 1.1e-07 60.5 75 49.3
Gorai.009G099500 Gossypium raimondii HOM05D002226 ORTHO05D002287 1.1e-07 60.5 57 54.4
CANSAT54G0203 Cannabis sativa HOM05D002226 ORTHO05D002287 1.9e-07 59.7 87 42.5
Hma1.2p1_0418F.1_g149050 Hydrangea macrophylla HOM05D002226 ORTHO05D002287 1.9e-07 59.7 70 47.1
Potri.009G030500 Populus trichocarpa HOM05D002226 ORTHO05D002287 1.9e-07 59.7 66 50.0
MSTRG.21199 Avicennia marina HOM05D002226 ORTHO05D002287 2.4e-07 59.3 68 48.5
HanXRQChr02g0049221 Helianthus annuus HOM05D002226 ORTHO05D002287 2.4e-07 59.3 73 50.7
MBI14_g37825_MAGBIO Magnolia biondii HOM05D002226 ORTHO05D002287 2.4e-07 59.3 83 42.2
Thecc.10G042600 Theobroma cacao HOM05D002226 ORTHO05D002287 2.4e-07 59.3 129 34.9
CAN.G327.13 Capsicum annuum HOM05D002226 ORTHO05D002287 3.2e-07 58.9 76 44.7
Cfa001476 Carpinus fangiana HOM05D002226 ORTHO05D002287 3.2e-07 58.9 126 37.3
CiPaw.14G068800 Carya illinoinensis HOM05D002226 ORTHO05D002287 3.2e-07 58.9 74 50.0
DCAR_015623 Daucus carota HOM05D002226 ORTHO05D002287 3.2e-07 58.9 68 48.5
Prupe.6G078600 Prunus persica HOM05D002226 ORTHO05D002287 3.2e-07 58.9 75 52.0
Dinv16994 Davidia involucrata HOM05D002226 ORTHO05D002287 4.1e-07 58.5 69 50.7
Dinv42943 Davidia involucrata HOM05D002226 ORTHO05D002287 4.1e-07 58.5 69 50.7
Dinv43157 Davidia involucrata HOM05D002226 ORTHO05D002287 4.1e-07 58.5 69 50.7
Nitab4.5_0006994g0070 Nicotiana tabacum HOM05D002226 ORTHO05D002287 5.4e-07 58.2 83 39.8
Potri.001G239200 Populus trichocarpa HOM05D002226 ORTHO05D002287 5.4e-07 58.2 71 47.9
TAR636G3402 Trochodendron aralioides HOM05D002226 ORTHO05D002287 5.4e-07 58.2 108 38.0
Gohir.D06G172900 Gossypium hirsutum HOM05D002226 ORTHO05D002287 7.1e-07 57.8 125 32.8
Gorai.010G202000 Gossypium raimondii HOM05D002226 ORTHO05D002287 7.1e-07 57.8 125 32.8
MD11G1110100 Malus domestica HOM05D002226 ORTHO05D002287 7.1e-07 57.8 106 37.7
Solyc11g065940.2 Solanum lycopersicum HOM05D002226 ORTHO05D002287 7.1e-07 57.8 94 38.3
BcaB01g01010 Brassica carinata HOM05D002226 ORTHO05D002287 9.2e-07 57.4 67 43.3
Eucgr.B02372 Eucalyptus grandis HOM05D002226 ORTHO05D002287 9.2e-07 57.4 66 48.5
Lj3g0000549 Lotus japonicus HOM05D002226 ORTHO05D002287 9.2e-07 57.4 70 42.9
Peaxi162Scf00832g00015 Petunia axillaris HOM05D002226 ORTHO05D002287 9.2e-07 57.4 69 46.4
Sabra09G0021200 Salix brachista HOM05D002226 ORTHO05D002287 9.2e-07 57.4 59 50.8
TAR636G2159 Trochodendron aralioides HOM05D002226 ORTHO05D002287 9.2e-07 57.4 108 38.0
CANSAT56G4402 Cannabis sativa HOM05D002226 ORTHO05D002287 1.2e-06 57.0 72 44.4
CiPaw.13G095100 Carya illinoinensis HOM05D002226 ORTHO05D002287 1.2e-06 57.0 70 47.1
Sopen11g025680 Solanum pennellii HOM05D002226 ORTHO05D002287 1.2e-06 57.0 94 38.3
TPR.G14481 Trifolium pratense HOM05D002226 ORTHO05D002287 1.2e-06 57.0 160 31.2
Actinidia37206 Actinidia chinensis HOM05D002226 ORTHO05D002287 1.6e-06 56.6 73 46.6
Migut.N02674 Erythranthe guttata HOM05D002226 ORTHO05D002287 1.6e-06 56.6 61 47.5
Glyma.15G038500 Glycine max HOM05D002226 ORTHO05D002287 1.6e-06 56.6 74 40.5
Glyma.18G291000 Glycine max HOM05D002226 ORTHO05D002287 1.6e-06 56.6 134 31.3
MD03G1094900 Malus domestica HOM05D002226 ORTHO05D002287 1.6e-06 56.6 109 39.4
PSO339G3858 Papaver somniferum HOM05D002226 ORTHO05D002287 1.6e-06 56.6 68 50.0
AUR62001793 Chenopodium quinoa HOM05D002226 ORTHO05D002287 2.1e-06 56.2 66 54.5
Aqoxy2G02113 Aquilegia oxysepala HOM05D002226 ORTHO05D002287 2.7e-06 55.8 73 42.5
Oeu019201.2 Olea europaea HOM05D002226 ORTHO05D002287 2.7e-06 55.8 112 33.0
Phvul.L005243 Phaseolus vulgaris HOM05D002226 ORTHO05D002287 2.7e-06 55.8 74 41.9
Sabra16G0144200 Salix brachista HOM05D002226 ORTHO05D002287 2.7e-06 55.8 74 45.9
SalBow3G3381 Salvia bowleyana HOM05D002226 ORTHO05D002287 3.5e-06 55.5 100 39.0
TAR623G0177 Trochodendron aralioides HOM05D002226 ORTHO05D002287 3.5e-06 55.5 47 55.3
Ah.08g219480 Amaranthus hybridus HOM05D002226 ORTHO05D002287 4.6e-06 55.1 110 34.5
BcaC01g01910 Brassica carinata HOM05D002226 ORTHO05D002287 4.6e-06 55.1 67 43.3
C03p70700 Brassica napus HOM05D002226 ORTHO05D002287 4.6e-06 55.1 67 43.3
BolC3t19310H Brassica oleracea HOM05D002226 ORTHO05D002287 4.6e-06 55.1 67 43.3
Gohir.A06G176900 Gossypium hirsutum HOM05D002226 ORTHO05D002287 4.6e-06 55.1 45 57.8
PSO151G0062 Papaver somniferum HOM05D002226 ORTHO05D002287 4.6e-06 55.1 68 50.0
ATR0559G215 Amborella trichopoda HOM05D002226 ORTHO05D002287 6.0e-06 54.7 69 49.3
arahy.Tifrunner.gnm1.ann1.H9TV53 Arachis hypogaea HOM05D002226 ORTHO05D002287 6.0e-06 54.7 77 42.9
Thhalv10002619m.g Eutrema salsugineum HOM05D002226 ORTHO05D002287 6.0e-06 54.7 67 44.8
unitig_899.g14893 Utricularia gibba HOM05D002226 ORTHO05D002287 6.0e-06 54.7 135 28.9
Nitab4.5_0001800g0190 Nicotiana tabacum HOM05D002226 ORTHO05D002287 7.8e-06 54.3 78 41.0
VMungo1080G1134 Vigna mungo HOM05D002226 ORTHO05D002287 7.8e-06 54.3 74 40.5
GSVIVG01024977001 Vitis vinifera HOM05D002226 ORTHO05D002287 7.8e-06 54.3 64 46.9


User provided reference genes

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