Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 8.3e-146 520.4 270 100.0
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 9.5e-142 506.9 270 96.7
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 6.2e-141 504.2 270 95.9
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 2.1e-125 452.6 270 86.7
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 4.4e-123 444.9 263 87.5
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 7.8e-120 434.1 234 93.6
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 1.9e-113 412.9 271 79.7
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 1.7e-111 406.4 270 75.2
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 1.9e-110 402.9 267 75.7
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 2.5e-110 402.5 261 77.4
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 2.5e-110 402.5 267 76.8
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 7.3e-110 401.0 266 74.1
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 9.6e-110 400.6 270 76.3
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.8e-109 399.1 267 74.9
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 3.6e-109 398.7 267 76.4
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 4.8e-109 398.3 267 74.9
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 2.4e-108 396.0 267 75.3
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 5.3e-108 394.8 267 74.2
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 6.9e-108 394.4 267 74.9
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 1.2e-107 393.7 266 75.2
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 1.5e-107 393.3 270 76.3
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 1.5e-107 393.3 271 75.6
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 2.0e-107 392.9 267 74.9
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 3.4e-107 392.1 260 75.4
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 3.4e-107 392.1 271 73.8
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 4.5e-107 391.7 265 76.6
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 5.8e-107 391.3 258 77.1
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 7.6e-107 391.0 248 78.6
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 9.9e-107 390.6 271 73.8
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 1.7e-106 389.8 267 73.8
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 2.2e-106 389.4 271 74.5
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 4.9e-106 388.3 267 74.9
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 6.4e-106 387.9 267 73.8
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.1e-105 387.1 250 77.6
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 1.4e-105 386.7 267 73.8
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 3.2e-105 385.6 271 73.4
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 4.2e-105 385.2 267 71.2
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 4.6e-104 381.7 261 70.5
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 6.0e-104 381.3 265 72.5
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 1.0e-103 380.6 263 74.1
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 1.8e-103 379.8 265 72.1
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 2.3e-103 379.4 304 65.5
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 3.9e-103 378.6 270 71.9
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 5.1e-103 378.3 267 71.9
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 6.7e-103 377.9 265 74.7
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 8.7e-103 377.5 270 71.1
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 1.1e-102 377.1 246 75.6
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 1.5e-102 376.7 252 76.2
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 2.5e-102 375.9 267 70.0
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 2.5e-102 375.9 259 72.6
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 2.5e-102 375.9 271 70.1
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 3.3e-102 375.6 243 77.0
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 3.3e-102 375.6 270 71.5
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 3.3e-102 375.6 267 71.2
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 4.3e-102 375.2 244 77.5
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 7.4e-102 374.4 267 69.7
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 7.4e-102 374.4 275 69.1
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 2.8e-101 372.5 255 72.2
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 1.1e-100 370.5 287 69.0
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 1.1e-100 370.5 267 69.7
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 1.4e-100 370.2 234 78.6
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 1.4e-100 370.2 258 71.7
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 3.1e-100 369.0 269 72.1
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 3.1e-100 369.0 267 71.9
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 3.1e-100 369.0 256 71.1
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 4.0e-100 368.6 270 69.3
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 5.3e-100 368.2 253 71.1
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 1.2e-99 367.1 267 68.2
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 1.2e-99 367.1 245 74.3
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 1.2e-99 367.1 270 70.7
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.2e-99 367.1 286 69.6
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 2.0e-99 366.3 265 69.1
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 2.6e-99 365.9 251 72.5
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 4.5e-99 365.2 230 79.1
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 5.8e-99 364.8 267 67.8
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 5.8e-99 364.8 244 73.0
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.0e-98 364.0 271 68.3
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 1.3e-98 363.6 267 67.4
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 1.3e-98 363.6 270 67.4
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 2.9e-98 362.5 270 68.5
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 6.5e-98 361.3 251 72.1
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 8.4e-98 360.9 248 73.4
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 1.1e-97 360.5 247 73.7
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 1.1e-97 360.5 247 73.7
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 2.5e-97 359.4 267 67.0
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 2.5e-97 359.4 227 79.3
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 7.1e-97 357.8 251 71.7
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 7.1e-97 357.8 249 73.5
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 9.3e-97 357.5 248 72.6
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 9.3e-97 357.5 235 73.6
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 1.6e-96 356.7 247 72.9
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.7e-96 355.9 277 67.9
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 3.5e-96 355.5 246 72.4
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 4.6e-96 355.1 356 55.6
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 4.6e-96 355.1 221 80.1
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 7.9e-96 354.4 324 61.1
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 1.3e-95 353.6 248 71.8
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 1.3e-95 353.6 247 71.3
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 1.8e-95 353.2 251 69.7
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 3.9e-95 352.1 248 71.8
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 3.9e-95 352.1 229 76.9
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 5.1e-95 351.7 300 61.7
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 6.7e-95 351.3 267 65.5
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 1.1e-94 350.5 247 70.0
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 4.3e-94 348.6 267 65.2
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 8.2e-93 344.4 224 78.6
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 1.4e-92 343.6 245 70.2
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 1.8e-92 343.2 267 65.5
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 2.4e-92 342.8 267 65.5
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 4.1e-92 342.0 281 62.3
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 5.3e-92 341.7 280 62.9
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 9.0e-92 340.9 213 79.3
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 3.4e-91 339.0 253 66.4
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 2.9e-90 335.9 213 77.9
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 1.4e-89 333.6 213 77.5
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 3.2e-89 332.4 266 66.9
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 3.2e-89 332.4 267 64.8
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 1.2e-88 330.5 246 68.7
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 1.0e-87 327.4 263 64.6
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 1.8e-87 326.6 269 64.7
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 3.0e-87 325.9 252 65.5
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 1.9e-86 323.2 252 65.5
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 1.8e-84 316.6 270 61.1
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 4.1e-84 315.5 259 67.2
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 5.3e-84 315.1 212 74.5
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 2.6e-83 312.8 267 62.5
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 1.0e-82 310.8 276 61.6
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 1.2e-80 303.9 204 74.5
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 3.6e-80 302.4 243 65.8
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.3e-79 299.7 269 57.6
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 2.0e-78 296.6 239 61.1
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 2.5e-78 296.2 184 82.1
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 2.5e-78 296.2 243 62.6
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 3.7e-77 292.4 201 72.1
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.8e-76 290.0 243 60.9
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.5e-75 287.0 305 53.4
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 2.0e-75 286.6 267 58.8
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 3.8e-74 282.3 234 61.5
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.1e-73 280.8 196 75.5
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 4.2e-73 278.9 206 68.0
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 7.9e-72 274.6 249 56.6
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 7.4e-70 268.1 268 60.8
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 9.7e-70 267.7 182 73.6
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 1.7e-69 266.9 252 54.4
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 1.8e-68 263.5 181 69.6
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 2.4e-68 263.1 247 55.9
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 9.4e-65 251.1 270 52.6
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 7.2e-57 224.9 207 60.9
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 1.6e-56 223.8 139 79.1
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 8.8e-55 218.0 234 50.4
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 5.7e-54 215.3 238 47.1
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.3e-50 204.1 187 58.3
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.2e-45 186.8 165 60.6
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 3.7e-45 186.0 122 77.0
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.8e-40 169.9 102 77.5
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 3.0e-39 166.4 105 81.0
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.2e-38 164.5 100 85.0
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 3.2e-36 156.4 147 60.5
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 1.5e-33 147.5 238 38.7
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 3.7e-29 132.9 84 82.1
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 5.4e-28 129.0 118 56.8
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 5.4e-28 129.0 118 56.8
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.1e-25 121.3 146 50.7
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.6e-24 117.5 175 45.7
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 1.4e-23 114.4 82 68.3
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 7.1e-20 102.1 160 40.0
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 8.6e-18 95.1 85 60.0
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.8e-15 87.4 68 63.2
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 6.8e-15 85.5 65 60.0
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 4.9e-13 79.3 304 27.0
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.1e-12 78.2 63 65.1
Ca_29445_v3 Cicer arietinum L. HOM05D004157 ORTHO05D148328 3.0e-10 70.1 191 27.2
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 4.7e-08 62.8 123 39.0
Medtr1g094635 Medicago truncatula HOM05D004157 ORTHO05D004860 9.9e-06 55.1 36 50.0


User provided reference genes

Program Settings