Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 2.0e-178 629.0 318 100.0
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 1.8e-171 605.9 317 89.9
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 6.7e-171 604.0 318 89.6
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 2.5e-157 558.9 324 88.6
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 4.7e-156 554.7 318 87.7
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 2.7e-135 485.7 320 80.6
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 1.5e-117 426.8 324 67.6
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 3.1e-115 419.1 319 67.4
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 6.0e-111 404.8 324 67.3
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 3.0e-110 402.5 317 65.9
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 5.6e-109 398.3 322 61.5
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 2.1e-108 396.4 341 61.3
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 5.2e-107 391.7 322 65.5
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 6.9e-107 391.3 330 62.7
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 6.9e-107 391.3 318 59.7
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 2.6e-106 389.4 318 66.0
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 7.6e-106 387.9 323 62.2
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 2.2e-105 386.3 321 60.4
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 6.4e-105 384.8 347 60.5
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 8.4e-105 384.4 329 60.8
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 1.1e-104 384.0 328 61.0
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 7.1e-104 381.3 319 56.7
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 4.6e-103 378.6 326 62.3
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 6.0e-103 378.3 321 62.3
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 7.8e-103 377.9 384 53.1
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 1.0e-102 377.5 338 59.8
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 2.3e-102 376.3 320 62.2
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 3.9e-102 375.6 324 59.9
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 3.3e-101 372.5 318 59.7
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 1.3e-100 370.5 320 59.7
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 2.8e-100 369.4 321 57.6
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 3.6e-100 369.0 317 59.3
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 6.2e-100 368.2 324 61.4
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 8.1e-100 367.9 334 58.4
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 1.1e-99 367.5 317 59.0
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 1.1e-99 367.5 319 59.9
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 6.9e-99 364.8 320 54.1
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 2.6e-98 362.8 294 64.6
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 3.4e-98 362.5 321 59.8
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 4.5e-98 362.1 309 59.5
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 2.9e-97 359.4 363 54.0
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 3.2e-96 355.9 326 59.2
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 3.2e-96 355.9 322 59.6
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 4.2e-96 355.5 347 54.2
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 4.2e-96 355.5 335 58.8
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 9.3e-96 354.4 318 60.4
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 1.2e-95 354.0 327 56.0
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 1.6e-95 353.6 335 57.6
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 2.7e-95 352.8 329 55.6
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 3.5e-95 352.4 313 61.0
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 4.6e-95 352.1 307 58.3
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 2.3e-94 349.7 322 54.0
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 8.7e-94 347.8 352 55.4
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 1.9e-93 346.7 320 55.0
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 3.3e-93 345.9 349 55.3
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 5.6e-93 345.1 342 56.4
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 9.6e-93 344.4 320 60.3
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 2.8e-92 342.8 349 54.7
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 8.1e-92 341.3 312 58.3
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 1.8e-91 340.1 345 50.4
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 2.4e-91 339.7 324 54.9
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 6.9e-91 338.2 334 56.0
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 1.2e-90 337.4 316 55.1
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.5e-90 337.0 318 52.5
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 7.6e-90 334.7 263 59.3
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 3.8e-89 332.4 319 56.4
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 1.0e-86 324.3 317 53.6
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 6.7e-86 321.6 320 53.8
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 1.1e-85 320.9 350 48.9
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 2.8e-84 316.2 328 49.7
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 8.2e-84 314.7 306 50.7
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 4.0e-83 312.4 323 51.7
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 5.3e-83 312.0 314 54.5
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 6.9e-83 311.6 328 49.1
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 7.6e-82 308.1 339 52.2
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 7.6e-82 308.1 339 52.2
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 2.2e-81 306.6 312 54.2
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 2.9e-81 306.2 339 51.9
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 3.5e-79 299.3 312 47.1
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 1.8e-78 297.0 337 48.7
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.8e-78 297.0 312 47.1
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 3.0e-78 296.2 345 48.7
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 3.0e-78 296.2 347 48.4
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 8.7e-78 294.7 347 49.3
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 8.7e-78 294.7 347 49.6
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 8.7e-78 294.7 347 49.3
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 8.7e-78 294.7 347 49.3
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 1.1e-77 294.3 347 49.6
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 1.3e-76 290.8 350 49.7
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 4.8e-76 288.9 313 45.7
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 1.4e-75 287.3 337 47.5
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 1.8e-75 287.0 347 47.3
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 4.1e-75 285.8 331 50.5
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 5.3e-75 285.4 328 51.2
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 5.3e-75 285.4 320 49.4
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 5.3e-75 285.4 379 46.2
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 1.2e-74 284.3 383 45.7
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 1.5e-74 283.9 315 51.1
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 4.5e-74 282.3 335 48.1
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 5.9e-74 282.0 346 49.1
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 7.7e-74 281.6 312 46.5
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 2.2e-73 280.0 361 43.5
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.2e-71 274.2 303 50.5
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 7.9e-71 271.6 318 45.6
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 5.5e-64 248.8 308 43.8
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 1.6e-63 247.3 306 41.8
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.4e-62 244.2 262 53.4
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 2.0e-61 240.4 307 42.7
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 4.4e-61 239.2 318 42.5
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.3e-57 227.6 327 41.0
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 3.2e-56 223.0 202 62.4
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 1.6e-55 220.7 391 34.0
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 1.7e-49 200.7 354 38.4
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 1.0e-46 191.4 127 59.8
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.7e-44 184.1 221 42.5
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 4.8e-44 182.6 320 36.9
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 2.2e-41 173.7 129 61.2
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 3.2e-40 169.9 152 58.6
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 1.6e-34 151.0 156 44.2
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 1.5e-32 144.4 293 31.7
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 9.5e-32 141.7 294 32.3
Mapoly0014s0128 Marchantia polymorpha HOM05D006293 ORTHO05D007971 2.1e-31 140.6 312 29.8
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 5.7e-29 132.5 309 30.4
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 1.5e-24 117.9 147 41.5
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 1.6e-23 114.4 323 28.5
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.9e-20 103.6 102 45.1
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 1.9e-16 90.9 169 34.9
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.9e-16 90.9 216 41.2
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 3.7e-12 76.6 56 57.1
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 3.9e-09 66.6 91 41.8
AagrBONN_evm.TU.Sc2ySwM_368.1639 Anthoceros agrestis HOM05D006293 ORTHO05D009176 2.8e-07 60.5 149 30.9
Mapoly0022s0141 Marchantia polymorpha HOM05D021038 ORTHO05D009018 1.8e-06 57.8 111 33.3
Lj1g0022592 Lotus japonicus HOM05D007363 ORTHO05D009018 4.0e-06 56.6 107 37.4


User provided reference genes

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