Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001534 Solanum tuberosum HOM05D002873 ORTHO05D002978 7.1e-22 106.7 67 100.0
Sopen02g027770 Solanum pennellii HOM05D002873 ORTHO05D002978 1.6e-21 105.5 67 98.5
Solyc02g082990.4 Solanum lycopersicum HOM05D002873 ORTHO05D002978 3.0e-20 101.3 67 95.5
Sopen02g034300 Solanum pennellii HOM05D002873 ORTHO05D002978 5.8e-16 87.0 67 73.1
Actinidia26314 Actinidia chinensis HOM05D002873 ORTHO05D002978 1.7e-15 85.5 67 80.6
Solyc02g089570.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 4.2e-14 80.9 67 82.1
Dinv33895 Davidia involucrata HOM05D002873 ORTHO05D002978 7.1e-14 80.1 67 73.1
Migut.H00561 Erythranthe guttata HOM05D002873 ORTHO05D002978 1.2e-13 79.3 67 76.1
Peaxi162Scf00479g00423 Petunia axillaris HOM05D002873 ORTHO05D002978 1.6e-13 79.0 67 76.1
Dinv33894 Davidia involucrata HOM05D002873 ORTHO05D002978 6.0e-13 77.0 67 62.7
Eucgr.I02095 Eucalyptus grandis HOM05D002873 ORTHO05D002978 6.0e-13 77.0 66 71.2
Prupe.3G244200 Prunus persica HOM05D002873 ORTHO05D002978 7.9e-13 76.6 66 65.2
Prupe.3G244300 Prunus persica HOM05D002873 ORTHO05D002978 7.9e-13 76.6 66 65.2
Prupe.3G244500 Prunus persica HOM05D002873 ORTHO05D002978 1.0e-12 76.3 66 65.2
Nitab4.5_0006224g0060 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.8e-12 75.5 64 68.8
Prupe.3G244100 Prunus persica HOM05D002873 ORTHO05D002978 1.8e-12 75.5 66 65.2
Peaxi162Scf01056g00020 Petunia axillaris HOM05D002873 ORTHO05D002978 3.0e-12 74.7 67 74.6
Prupe.3G244400 Prunus persica HOM05D002873 ORTHO05D002978 3.0e-12 74.7 66 63.6
Prupe.3G244600 Prunus persica HOM05D002873 ORTHO05D002978 3.0e-12 74.7 66 63.6
Solyc02g065640.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 5.1e-12 73.9 67 74.6
Solyc02g089580.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 5.1e-12 73.9 67 77.6
Phvul.004G047300 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 6.7e-12 73.6 63 61.9
CSS0045706 Camellia sinensis var. sinensis HOM05D002873 ORTHO05D002978 1.1e-11 72.8 67 71.6
CSS0047860 Camellia sinensis var. sinensis HOM05D002873 ORTHO05D002978 1.1e-11 72.8 67 71.6
FAN02G0494 Fragaria x ananassa HOM05D002873 ORTHO05D002978 1.1e-11 72.8 66 68.2
Lalb_Chr04g0258251 Lupinus albus HOM05D002873 ORTHO05D002978 1.1e-11 72.8 64 62.5
THA.LOC109117084 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 1.9e-11 72.0 66 60.6
Actinidia18105 Actinidia chinensis HOM05D002873 ORTHO05D002978 2.5e-11 71.6 67 67.2
A02p10830 Brassica napus HOM05D002873 ORTHO05D002978 3.3e-11 71.2 66 59.1
BraA02t06145Z Brassica rapa HOM05D002873 ORTHO05D002978 3.3e-11 71.2 66 59.1
CAN.G497.26 Capsicum annuum HOM05D002873 ORTHO05D002978 3.3e-11 71.2 67 74.6
CAN.G497.27 Capsicum annuum HOM05D002873 ORTHO05D002978 3.3e-11 71.2 67 74.6
RcHm_v2.0_Chr2g0163991 Rosa chinensis HOM05D002873 ORTHO05D002978 3.3e-11 71.2 67 59.7
Sed0008680 Sechium edule HOM05D002873 ORTHO05D002978 4.3e-11 70.9 66 62.1
Nitab4.5_0015566g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 5.6e-11 70.5 67 74.6
Sopen02g015850 Solanum pennellii HOM05D002873 ORTHO05D002978 7.4e-11 70.1 67 71.6
BcaC03g14385 Brassica carinata HOM05D002873 ORTHO05D002978 9.6e-11 69.7 66 57.6
C02p17950 Brassica napus HOM05D002873 ORTHO05D002978 9.6e-11 69.7 66 57.6
BolC2t07926H Brassica oleracea HOM05D002873 ORTHO05D002978 9.6e-11 69.7 66 57.6
GSVIVG01036492001 Vitis vinifera HOM05D002873 ORTHO05D002978 1.3e-10 69.3 67 56.7
Cc00_g21590 Coffea canephora HOM05D002873 ORTHO05D002978 1.6e-10 68.9 67 70.1
PGSC0003DMG400010052 Solanum tuberosum HOM05D002873 ORTHO05D002978 1.6e-10 68.9 67 73.1
TWI34G1371 Tripterygium wilfordii HOM05D002873 ORTHO05D002978 2.1e-10 68.6 66 57.6
Ca_06717_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 2.8e-10 68.2 62 59.7
FAN05G4367 Fragaria x ananassa HOM05D002873 ORTHO05D002978 2.8e-10 68.2 67 70.1
Peaxi162Scf00479g00055 Petunia axillaris HOM05D002873 ORTHO05D002978 3.7e-10 67.8 67 56.7
Solyc02g089590.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 4.8e-10 67.4 67 71.6
CsaV3_5G004620 Cucumis sativus L. HOM05D002873 ORTHO05D002978 6.2e-10 67.0 66 60.6
MD09G1079600 Malus domestica HOM05D002873 ORTHO05D002978 8.2e-10 66.6 66 60.6
Oeu049338.1 Olea europaea HOM05D002873 ORTHO05D002978 8.2e-10 66.6 67 68.7
RcHm_v2.0_Chr2g0164011 Rosa chinensis HOM05D002873 ORTHO05D002978 8.2e-10 66.6 66 68.2
Actinidia36291 Actinidia chinensis HOM05D002873 ORTHO05D002978 1.1e-09 66.2 67 65.7
arahy.Tifrunner.gnm1.ann1.4T36CH Arachis hypogaea HOM05D002873 ORTHO05D002978 1.1e-09 66.2 65 56.9
arahy.Tifrunner.gnm1.ann1.JTM1YJ Arachis hypogaea HOM05D002873 ORTHO05D002978 1.1e-09 66.2 65 56.9
Oeu032858.1 Olea europaea HOM05D002873 ORTHO05D002978 1.1e-09 66.2 67 68.7
Prupe.3G244700 Prunus persica HOM05D002873 ORTHO05D002978 1.1e-09 66.2 64 59.4
Cfa020560 Carpinus fangiana HOM05D002873 ORTHO05D002978 1.8e-09 65.5 67 55.2
Dinv34873 Davidia involucrata HOM05D002873 ORTHO05D002978 1.8e-09 65.5 69 65.2
Sabra04G0074600 Salix brachista HOM05D002873 ORTHO05D002978 1.8e-09 65.5 66 68.2
Sed0026183 Sechium edule HOM05D002873 ORTHO05D002978 1.8e-09 65.5 66 63.6
Sc11g0008050 Simmondsia chinensis HOM05D002873 ORTHO05D002978 1.8e-09 65.5 67 59.7
Haze_17643 Corylus avellana HOM05D002873 ORTHO05D002978 3.1e-09 64.7 67 53.7
Dinv38615 Davidia involucrata HOM05D002873 ORTHO05D002978 3.1e-09 64.7 66 56.1
Migut.N00988 Erythranthe guttata HOM05D002873 ORTHO05D002978 3.1e-09 64.7 67 65.7
Rhsim08G0081300 Rhododendron simsii HOM05D002873 ORTHO05D002978 3.1e-09 64.7 40 82.5
Hma1.2p1_0588F.1_g184500 Hydrangea macrophylla HOM05D002873 ORTHO05D002978 4.0e-09 64.3 67 65.7
Nitab4.5_0012845g0030 Nicotiana tabacum HOM05D002873 ORTHO05D002978 4.0e-09 64.3 67 65.7
Potri.017G108400 Populus trichocarpa HOM05D002873 ORTHO05D002978 4.0e-09 64.3 66 65.2
CARHR288730 Cardamine hirsuta HOM05D002873 ORTHO05D002978 5.3e-09 63.9 61 55.7
Haze_14075 Corylus avellana HOM05D002873 ORTHO05D002978 5.3e-09 63.9 66 53.0
Migut.N00991 Erythranthe guttata HOM05D002873 ORTHO05D002978 5.3e-09 63.9 67 65.7
Glyma.19G040000 Glycine max HOM05D002873 ORTHO05D002978 5.3e-09 63.9 61 72.1
Peaxi162Scf00019g00065 Petunia axillaris HOM05D002873 ORTHO05D002978 5.3e-09 63.9 40 80.0
Sed0018450 Sechium edule HOM05D002873 ORTHO05D002978 6.9e-09 63.5 66 66.7
Aqoxy6G00630 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 9.0e-09 63.2 67 53.7
Sabra04G0074500 Salix brachista HOM05D002873 ORTHO05D002978 9.0e-09 63.2 66 66.7
Carub.0003s0158 Capsella rubella HOM05D002873 ORTHO05D002978 1.2e-08 62.8 66 51.5
Dinv36852 Davidia involucrata HOM05D002873 ORTHO05D002978 1.2e-08 62.8 65 56.9
Glyma.08G255700 Glycine max HOM05D002873 ORTHO05D002978 1.2e-08 62.8 62 58.1
Glyma.18G278600 Glycine max HOM05D002873 ORTHO05D002978 1.2e-08 62.8 62 67.7
A03p32950 Brassica napus HOM05D002873 ORTHO05D002978 1.5e-08 62.4 65 61.5
BraA03t12463Z Brassica rapa HOM05D002873 ORTHO05D002978 1.5e-08 62.4 65 61.5
Thhalv10028020m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 1.5e-08 62.4 65 67.7
Sopen02g034310 Solanum pennellii HOM05D002873 ORTHO05D002978 1.5e-08 62.4 67 67.2
vmacro18088 Vaccinium macrocarpon HOM05D002873 ORTHO05D002978 1.5e-08 62.4 67 65.7
AL3G11800 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 2.0e-08 62.0 66 51.5
THA.LOC109116986 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 2.0e-08 62.0 65 66.2
Cpa.g.sc188.26 Carica papaya HOM05D002873 ORTHO05D002978 2.6e-08 61.6 64 57.8
Cc07_g04790 Coffea canephora HOM05D002873 ORTHO05D002978 2.6e-08 61.6 67 65.7
MELO3C005500.2 Cucumis melo HOM05D002873 ORTHO05D002978 2.6e-08 61.6 66 60.6
MD17G1070100 Malus domestica HOM05D002873 ORTHO05D002978 3.4e-08 61.2 66 66.7
PGR042G3018 Punica granatum HOM05D002873 ORTHO05D002978 3.4e-08 61.2 66 66.7
Potri.017G108300 Populus trichocarpa HOM05D002873 ORTHO05D002978 4.5e-08 60.8 66 62.1
Potri.017G108350 Populus trichocarpa HOM05D002873 ORTHO05D002978 4.5e-08 60.8 66 62.1
BraA10t43210Z Brassica rapa HOM05D002873 ORTHO05D002978 5.8e-08 60.5 66 63.6
Migut.H00555 Erythranthe guttata HOM05D002873 ORTHO05D002978 5.8e-08 60.5 60 48.3
Peaxi162Scf00479g00065 Petunia axillaris HOM05D002873 ORTHO05D002978 5.8e-08 60.5 67 52.2
Sed0018699 Sechium edule HOM05D002873 ORTHO05D002978 5.8e-08 60.5 66 65.2
Medtr7g020780 Medicago truncatula HOM05D002873 ORTHO05D002978 7.6e-08 60.1 67 52.2
vmacro18087 Vaccinium macrocarpon HOM05D002873 ORTHO05D002978 7.6e-08 60.1 67 64.2
A10p11190 Brassica napus HOM05D002873 ORTHO05D002978 1.0e-07 59.7 66 63.6
Duzib268G0192 Durio zibethinus HOM05D002873 ORTHO05D002978 1.0e-07 59.7 66 65.2
Nitab4.5_0001324g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.0e-07 59.7 67 62.7
Aqoxy6G02621 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 1.3e-07 59.3 67 49.3
CAN.G890.56 Capsicum annuum HOM05D002873 ORTHO05D002978 1.3e-07 59.3 49 79.6
CsaV3_5G038880 Cucumis sativus L. HOM05D002873 ORTHO05D002978 1.3e-07 59.3 66 56.1
Lj1g0022638 Lotus japonicus HOM05D002873 ORTHO05D002978 1.3e-07 59.3 63 60.3
BcaC09g47705 Brassica carinata HOM05D002873 ORTHO05D002978 1.7e-07 58.9 66 50.0
BNapus_Darmor_BZH_scaffold_208p00010 Brassica napus HOM05D002873 ORTHO05D002978 1.7e-07 58.9 66 50.0
BolC1t05901H Brassica oleracea HOM05D002873 ORTHO05D002978 1.7e-07 58.9 66 50.0
BraSC141t45633Z Brassica rapa HOM05D002873 ORTHO05D002978 1.7e-07 58.9 66 50.0
Carub.0008s1411 Capsella rubella HOM05D002873 ORTHO05D002978 1.7e-07 58.9 65 58.5
AT3G02480 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 2.2e-07 58.5 66 50.0
BNapus_Darmor_BZH_scaffold_122p00010 Brassica napus HOM05D002873 ORTHO05D002978 2.2e-07 58.5 66 50.0
BNapus_Darmor_BZH_scaffold_99p00020 Brassica napus HOM05D002873 ORTHO05D002978 2.2e-07 58.5 66 50.0
BolC1t05900H Brassica oleracea HOM05D002873 ORTHO05D002978 2.2e-07 58.5 66 50.0
CsaV3_5G004610 Cucumis sativus L. HOM05D002873 ORTHO05D002978 2.9e-07 58.2 66 57.6
Psat3g191840 Pisum sativum HOM05D002873 ORTHO05D002978 2.9e-07 58.2 60 51.7
Migut.K00873 Erythranthe guttata HOM05D002873 ORTHO05D002978 4.9e-07 57.4 67 61.2
C09p43800 Brassica napus HOM05D002873 ORTHO05D002978 6.5e-07 57.0 66 60.6
BolC9t57265H Brassica oleracea HOM05D002873 ORTHO05D002978 6.5e-07 57.0 66 60.6
Hma1.2p1_0588F.1_g184450 Hydrangea macrophylla HOM05D002873 ORTHO05D002978 6.5e-07 57.0 64 60.9
SalBow1G2879 Salvia bowleyana HOM05D025819 ORTHO05D030564 6.5e-07 57.0 67 50.7
SalBow1G7806 Salvia bowleyana HOM05D025819 ORTHO05D030564 6.5e-07 57.0 67 50.7
BcaC01g04444 Brassica carinata HOM05D002873 ORTHO05D002978 8.4e-07 56.6 65 52.3
C03p40070 Brassica napus HOM05D002873 ORTHO05D002978 8.4e-07 56.6 65 52.3
BolC3t16273H Brassica oleracea HOM05D002873 ORTHO05D002978 8.4e-07 56.6 65 52.3
Thhalv10015216m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 8.4e-07 56.6 65 60.0
Rhsim08G0081200 Rhododendron simsii HOM05D002873 ORTHO05D002978 8.4e-07 56.6 67 62.7
Ca_20748_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 1.1e-06 56.2 67 64.2
MELO3C022078.2 Cucumis melo HOM05D002873 ORTHO05D002978 1.1e-06 56.2 66 53.0
Rhsim10G0062500 Rhododendron simsii HOM05D007347 ORTHO05D009296 1.1e-06 56.2 40 72.5
Cfa007996 Carpinus fangiana HOM05D002873 ORTHO05D002978 1.9e-06 55.5 66 59.1
Potri.004G107600 Populus trichocarpa HOM05D002873 ORTHO05D002978 2.5e-06 55.1 66 59.1
Hund13793 Selenicereus undatus HOM05D002873 ORTHO05D002978 2.5e-06 55.1 68 48.5
Thecc.04G146000 Theobroma cacao HOM05D002873 ORTHO05D002978 2.5e-06 55.1 66 60.6
BcaB08g35740 Brassica carinata HOM05D002873 ORTHO05D002978 3.2e-06 54.7 66 59.1
Ca_06720_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 4.2e-06 54.3 69 59.4
Sc11g0008060 Simmondsia chinensis HOM05D002873 ORTHO05D002978 4.2e-06 54.3 66 53.0
vmacro18089 Vaccinium macrocarpon HOM05D002873 ORTHO05D002978 4.2e-06 54.3 67 61.2
Ciclev10013625m.g Citrus clementina HOM05D002873 ORTHO05D002978 5.5e-06 53.9 34 79.4
FvH4_6g45800 Fragaria vesca HOM05D002873 ORTHO05D002978 5.5e-06 53.9 40 67.5
FAN09G4276 Fragaria x ananassa HOM05D002873 ORTHO05D002978 5.5e-06 53.9 40 67.5
FAN14G0065 Fragaria x ananassa HOM05D003981 ORTHO05D003666 5.5e-06 53.9 40 67.5
THA.LOC109116088 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 5.5e-06 53.9 66 47.0
Duzib138G1180 Durio zibethinus HOM05D002873 ORTHO05D002978 7.1e-06 53.5 66 60.6
Sed0011149 Sechium edule HOM05D002873 ORTHO05D002978 7.1e-06 53.5 73 47.9
AT5G53820 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 9.3e-06 53.1 66 56.1
Medtr7g019290 Medicago truncatula HOM05D002873 ORTHO05D002978 9.3e-06 53.1 69 50.7
Psat3g146000 Pisum sativum HOM05D002873 ORTHO05D002978 9.3e-06 53.1 39 69.2
TWI32G0493 Tripterygium wilfordii HOM05D002873 ORTHO05D002978 9.3e-06 53.1 67 58.2


User provided reference genes

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