Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 7.1e-116 420.6 215 100.0
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 2.7e-75 285.8 157 96.2
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 4.7e-75 285.0 157 96.8
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 3.2e-68 262.3 155 89.0
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 1.4e-66 256.9 157 87.3
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 2.3e-66 256.1 157 87.3
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 3.8e-61 238.8 163 80.4
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 6.2e-51 204.9 157 70.7
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.2e-49 200.7 157 66.2
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.2e-49 200.7 157 66.2
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 2.0e-49 199.9 157 66.2
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 7.5e-49 198.0 189 58.7
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 3.7e-48 195.7 157 67.5
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 4.9e-48 195.3 157 66.2
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 3.2e-47 192.6 157 65.6
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.0e-46 189.9 158 63.9
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 7.8e-46 188.0 158 63.3
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 1.3e-45 187.2 153 66.7
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 1.7e-45 186.8 158 63.9
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 2.3e-45 186.4 155 65.2
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 3.0e-45 186.0 147 66.7
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 3.0e-45 186.0 149 63.1
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 3.9e-45 185.7 147 66.7
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 8.6e-45 184.5 158 62.0
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 1.1e-44 184.1 148 68.9
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 1.9e-44 183.3 147 66.0
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 2.5e-44 183.0 147 65.3
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 2.5e-44 183.0 149 62.4
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 3.3e-44 182.6 157 60.5
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 3.3e-44 182.6 147 66.0
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 9.5e-44 181.0 157 61.8
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 2.1e-43 179.9 158 62.7
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 2.8e-43 179.5 153 64.1
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 2.8e-43 179.5 153 64.1
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 4.7e-43 178.7 174 54.0
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 5.2e-42 175.3 155 58.7
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 1.2e-41 174.1 151 61.6
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 1.2e-41 174.1 151 61.6
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 3.4e-41 172.6 156 59.0
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 4.4e-41 172.2 154 64.3
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 7.5e-41 171.4 156 60.3
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 7.5e-41 171.4 153 59.5
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.3e-40 170.6 156 57.7
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 1.3e-40 170.6 156 59.0
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 1.7e-40 170.2 178 53.9
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 2.2e-40 169.9 146 63.0
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 2.9e-40 169.5 147 63.3
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 6.4e-40 168.3 155 58.1
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 1.1e-39 167.5 157 59.2
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 1.4e-39 167.2 157 57.3
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.9e-39 166.8 147 62.6
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 5.4e-39 165.2 158 58.9
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 5.4e-39 165.2 147 60.5
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 7.1e-39 164.9 146 61.6
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 7.1e-39 164.9 153 58.2
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 9.2e-39 164.5 156 57.7
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 2.1e-38 163.3 163 54.0
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 2.7e-38 162.9 155 56.1
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.7e-38 162.9 178 53.9
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 2.7e-38 162.9 149 61.1
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 3.5e-38 162.5 145 61.4
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 3.5e-38 162.5 147 59.2
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 3.5e-38 162.5 129 69.0
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 4.6e-38 162.2 155 57.4
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 1.7e-37 160.2 149 58.4
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 2.3e-37 159.8 160 54.4
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 3.9e-37 159.1 168 56.0
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 5.1e-37 158.7 167 54.5
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 6.6e-37 158.3 158 54.4
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 1.1e-36 157.5 146 57.5
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 1.1e-36 157.5 146 56.8
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 4.3e-36 155.6 146 56.8
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 4.3e-36 155.6 146 56.8
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 5.6e-36 155.2 146 57.5
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 5.6e-36 155.2 168 54.8
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 5.6e-36 155.2 155 56.1
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 9.5e-36 154.5 148 54.1
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 2.1e-35 153.3 140 62.1
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 2.1e-35 153.3 167 51.5
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 4.7e-35 152.1 146 54.8
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 4.7e-35 152.1 183 47.5
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 6.2e-35 151.8 146 55.5
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 1.1e-34 151.0 150 54.7
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 1.1e-34 151.0 150 54.7
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.1e-34 151.0 156 51.9
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 1.8e-34 150.2 146 54.8
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.8e-34 150.2 154 57.8
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 2.3e-34 149.8 148 54.1
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 4.0e-34 149.1 115 66.1
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 4.0e-34 149.1 167 50.9
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 6.8e-34 148.3 147 55.1
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 6.8e-34 148.3 157 51.6
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 2.0e-33 146.7 149 54.4
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 4.4e-33 145.6 156 53.8
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 7.6e-33 144.8 156 50.6
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 9.9e-33 144.4 137 57.7
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 1.3e-32 144.1 145 53.1
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 1.7e-32 143.7 147 55.1
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.7e-32 143.7 155 49.7
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 6.4e-32 141.7 144 54.2
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.4e-31 140.6 147 55.1
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.4e-31 139.8 141 55.3
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 3.2e-31 139.4 121 62.8
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 4.1e-31 139.0 133 56.4
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 4.1e-31 139.0 133 56.4
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 4.1e-31 139.0 129 58.1
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 5.4e-31 138.7 154 51.3
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 9.2e-31 137.9 172 48.8
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 2.1e-30 136.7 223 42.2
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 3.5e-30 136.0 158 51.9
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 4.6e-30 135.6 147 50.3
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 1.0e-29 134.4 143 55.2
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 1.7e-29 133.7 113 62.8
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 3.9e-29 132.5 141 51.8
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 6.6e-29 131.7 159 47.8
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 1.1e-28 131.0 159 48.4
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 1.9e-28 130.2 130 53.1
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 2.5e-28 129.8 154 45.5
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 3.3e-28 129.4 146 49.3
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 9.6e-28 127.9 198 44.4
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.6e-27 127.1 115 60.0
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.4e-26 124.0 206 42.2
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 2.4e-26 123.2 142 48.6
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 1.5e-25 120.6 149 47.0
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 2.0e-25 120.2 113 59.3
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 1.7e-24 117.1 157 46.5
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 3.2e-23 112.8 75 72.0
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 9.3e-23 111.3 155 45.8
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 4.6e-22 109.0 164 43.3
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 4.6e-22 109.0 156 42.9
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 2.3e-21 106.7 246 34.1
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 9.6e-20 101.3 157 43.3
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 6.2e-19 98.6 70 64.3
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 5.8e-17 92.0 60 66.7
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 9.9e-17 91.3 140 43.6
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 3.8e-16 89.4 75 68.0
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 3.8e-16 89.4 115 49.6
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 8.4e-16 88.2 157 34.4
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.4e-15 87.4 85 62.4
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.9e-15 87.0 76 61.8
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 5.4e-15 85.5 76 67.1
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.6e-14 84.0 76 59.2
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 2.1e-14 83.6 91 52.7
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 2.7e-14 83.2 86 58.1
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 7.9e-14 81.6 111 50.5
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 9.0e-10 68.2 67 61.2
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 1.2e-09 67.8 148 33.1
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 2.2e-08 63.5 124 33.1
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 2.4e-07 60.1 61 54.1
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 5.5e-07 58.9 49 67.3
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 5.5e-07 58.9 49 67.3


User provided reference genes

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