Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001502 Solanum tuberosum HOM05D006603 ORTHO05D007786 1.6e-66 256.1 144 100.0
Sopen09g033770 Solanum pennellii HOM05D006603 ORTHO05D007786 1.5e-64 249.6 144 95.1
CAN.G812.23 Capsicum annuum HOM05D006603 ORTHO05D007786 5.9e-58 227.6 145 84.8
Nitab4.5_0005154g0030 Nicotiana tabacum HOM05D006603 ORTHO05D007786 1.5e-56 223.0 144 82.6
Peaxi162Scf00531g00210 Petunia axillaris HOM05D006603 ORTHO05D007786 4.9e-52 208.0 141 76.6
Solyc09g090820.4 Solanum lycopersicum HOM05D006603 ORTHO05D007786 2.7e-42 175.6 95 95.8
Nitab4.5_0001041g0010 Nicotiana tabacum HOM05D006603 ORTHO05D007786 7.3e-40 167.5 122 75.4
Cc03_g06500 Coffea canephora HOM05D006603 ORTHO05D007786 2.1e-39 166.0 152 59.9
CSS0001604 Camellia sinensis var. sinensis HOM05D006603 ORTHO05D007786 2.3e-38 162.5 141 60.3
Dinv29792 Davidia involucrata HOM05D006603 ORTHO05D007786 4.4e-37 158.3 142 59.2
HanXRQChr01g0023081 Helianthus annuus HOM05D006603 ORTHO05D007786 5.8e-37 157.9 131 60.3
Hma1.2p1_0112F.1_g054890 Hydrangea macrophylla HOM05D006603 ORTHO05D007786 7.5e-37 157.5 146 56.2
Medtr1g045660 Medicago truncatula HOM05D006603 ORTHO05D007786 9.9e-37 157.1 146 56.8
Lsat_1_v5_gn_1_75441 Lactuca sativa HOM05D006603 ORTHO05D007786 2.2e-36 156.0 130 60.8
Sc25g0004840 Simmondsia chinensis HOM05D006603 ORTHO05D007786 3.7e-36 155.2 140 55.7
Psat6g018400 Pisum sativum HOM05D006603 ORTHO05D007786 1.4e-35 153.3 144 56.9
Glyma.20G082000 Glycine max HOM05D006603 ORTHO05D007786 2.4e-35 152.5 145 56.6
Gohir.A09G230800 Gossypium hirsutum HOM05D006603 ORTHO05D007786 7.1e-35 151.0 146 56.2
Gohir.D09G231900 Gossypium hirsutum HOM05D006603 ORTHO05D007786 7.1e-35 151.0 146 55.5
Ciclev10006126m.g Citrus clementina HOM05D006603 ORTHO05D007786 1.2e-34 150.2 151 55.6
Ca_25848_v3 Cicer arietinum L. HOM05D006603 ORTHO05D007786 1.6e-34 149.8 145 55.2
TPR.G23967 Trifolium pratense HOM05D006603 ORTHO05D007786 1.6e-34 149.8 145 56.6
Actinidia39936 Actinidia chinensis HOM05D006603 ORTHO05D007786 2.1e-34 149.4 144 55.6
MBI10_g39247_MAGBIO Magnolia biondii HOM05D006603 ORTHO05D007786 2.1e-34 149.4 140 58.6
Actinidia11378 Actinidia chinensis HOM05D006603 ORTHO05D007786 4.6e-34 148.3 144 55.6
Lj6g0018890 Lotus japonicus HOM05D006603 ORTHO05D007786 7.8e-34 147.5 145 54.5
SGA_v2.0_scaffold147G36268 Striga asiatica HOM05D006603 ORTHO05D007786 1.0e-33 147.1 148 56.8
Lalb_Chr03g0036931 Lupinus albus HOM05D006603 ORTHO05D007786 3.0e-33 145.6 142 54.2
Hund22279 Selenicereus undatus HOM05D006603 ORTHO05D007786 3.0e-33 145.6 139 54.7
Thecc.04G267600 Theobroma cacao HOM05D006603 ORTHO05D007786 3.9e-33 145.2 144 55.6
Migut.G00559 Erythranthe guttata HOM05D006603 ORTHO05D007786 2.5e-32 142.5 148 60.1
Phvul.007G231900 Phaseolus vulgaris HOM05D006603 ORTHO05D007786 2.5e-32 142.5 145 53.8
Manes.03G157300 Manihot esculenta HOM05D006603 ORTHO05D007786 3.3e-32 142.1 145 54.5
Oeu059390.1 Olea europaea HOM05D006603 ORTHO05D007786 7.3e-32 141.0 128 56.2
TAR633G2131 Trochodendron aralioides HOM05D006603 ORTHO05D007786 7.3e-32 141.0 141 52.5
EL10Ac3g06681 Beta vulgaris HOM05D006603 ORTHO05D007786 1.2e-31 140.2 138 55.1
CiPaw.01G176600 Carya illinoinensis HOM05D006603 ORTHO05D007786 1.2e-31 140.2 144 52.1
MELO3C023048.2 Cucumis melo HOM05D006603 ORTHO05D007786 2.1e-31 139.4 144 50.7
Duzib151G0118 Durio zibethinus HOM05D006603 ORTHO05D007786 2.1e-31 139.4 133 57.9
ECA248G1661 Erigeron canadensis HOM05D006603 ORTHO05D007786 2.8e-31 139.0 128 57.0
MSTRG.9849 Avicennia marina HOM05D006603 ORTHO05D007786 1.4e-30 136.7 145 53.1
THA.LOC104816009 Tarenaya hassleriana HOM05D006603 ORTHO05D007786 1.4e-30 136.7 140 53.6
CsaV3_2G012360 Cucumis sativus L. HOM05D006603 ORTHO05D007786 1.8e-30 136.3 144 50.0
CANSAT78G1588 Cannabis sativa HOM05D006603 ORTHO05D007786 2.4e-30 136.0 141 53.9
GSVIVG01027941001 Vitis vinifera HOM05D006603 ORTHO05D007786 6.8e-30 134.4 142 55.6
Eucgr.H02902 Eucalyptus grandis HOM05D006603 ORTHO05D007786 8.9e-30 134.0 143 52.4
Aqoxy2G03755 Aquilegia oxysepala HOM05D006603 ORTHO05D007786 2.0e-29 132.9 141 53.2
Duzib212G0187 Durio zibethinus HOM05D006603 ORTHO05D007786 2.0e-29 132.9 141 52.5
vmacro15486 Vaccinium macrocarpon HOM05D006603 ORTHO05D007786 2.0e-29 132.9 167 48.5
Potri.008G173000 Populus trichocarpa HOM05D006603 ORTHO05D007786 4.4e-29 131.7 144 52.8
arahy.Tifrunner.gnm1.ann1.T2GGRX Arachis hypogaea HOM05D006603 ORTHO05D007786 5.8e-29 131.3 168 46.4
arahy.Tifrunner.gnm1.ann1.GIKJ41 Arachis hypogaea HOM05D006603 ORTHO05D007786 1.3e-28 130.2 168 45.8
Sp1g03390 Schrenkiella parvula HOM05D006603 ORTHO05D007786 1.3e-28 130.2 145 55.2
PGR004G2303 Punica granatum HOM05D006603 ORTHO05D007786 1.7e-28 129.8 137 51.1
RcHm_v2.0_Chr4g0395941 Rosa chinensis HOM05D006603 ORTHO05D007786 2.9e-28 129.0 138 52.9
Potri.010G064500 Populus trichocarpa HOM05D006603 ORTHO05D007786 4.9e-28 128.3 139 53.2
AT1G04555 Arabidopsis thaliana HOM05D006603 ORTHO05D007786 6.4e-28 127.9 142 53.5
AL1G14230 Arabidopsis lyrata HOM05D006603 ORTHO05D007786 8.4e-28 127.5 142 54.2
FAN12G4195 Fragaria x ananassa HOM05D006603 ORTHO05D007786 8.4e-28 127.5 138 50.0
BolC5t29054H Brassica oleracea HOM05D006603 ORTHO05D007786 1.4e-27 126.7 133 51.1
TWI73G0993 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 1.4e-27 126.7 144 46.5
TWI09G1292 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 2.4e-27 125.9 144 49.3
BcaNung06560 Brassica carinata HOM05D006603 ORTHO05D007786 3.2e-27 125.6 147 54.4
FvH4_4g05040 Fragaria vesca HOM05D006603 ORTHO05D007786 3.2e-27 125.6 138 50.0
Thhalv10009014m.g Eutrema salsugineum HOM05D006603 ORTHO05D007786 4.1e-27 125.2 138 55.8
Carub.0001s0377 Capsella rubella HOM05D006603 ORTHO05D007786 5.4e-27 124.8 138 49.3
BraA10t42567Z Brassica rapa HOM05D006603 ORTHO05D007786 1.6e-26 123.2 141 48.9
PSO210G0805 Papaver somniferum HOM05D006603 ORTHO05D007786 2.1e-26 122.9 137 51.1
FAN22G1779 Fragaria x ananassa HOM05D006603 ORTHO05D007786 4.6e-26 121.7 138 48.6
Manes.15G046500 Manihot esculenta HOM05D006603 ORTHO05D007786 4.6e-26 121.7 140 50.0
MD13G1223900 Malus domestica HOM05D006603 ORTHO05D007786 1.3e-25 120.2 141 47.5
Cfa014798 Carpinus fangiana HOM05D006603 ORTHO05D007786 1.7e-25 119.8 89 68.5
Haze_11482 Corylus avellana HOM05D006603 ORTHO05D007786 2.3e-25 119.4 89 68.5
CDE04G0122 Ceratophyllum demersum HOM05D006603 ORTHO05D007786 3.0e-25 119.0 139 48.2
MD16G1228700 Malus domestica HOM05D006603 ORTHO05D007786 5.1e-25 118.2 141 48.2
PSO210G7184 Papaver somniferum HOM05D006603 ORTHO05D007786 5.1e-25 118.2 139 50.4
QL06p021600 Quercus lobata HOM05D006603 ORTHO05D007786 6.6e-25 117.9 89 66.3
ATR0787G168 Amborella trichopoda HOM05D006603 ORTHO05D007786 1.1e-24 117.1 137 46.0
Os02g0816700 Oryza sativa ssp. japonica HOM05D006603 ORTHO05D007786 1.6e-23 113.2 134 48.5
VMungo0720G0308 Vigna mungo HOM05D006603 ORTHO05D007786 2.1e-23 112.8 125 49.6
Sabra08G0132100 Salix brachista HOM05D006603 ORTHO05D007786 3.6e-23 112.1 88 63.6
Aa31LG1G20320 Aethionema arabicum HOM05D006603 ORTHO05D007786 4.7e-23 111.7 146 45.2
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 6.2e-23 111.3 88 64.8
CARHR003900 Cardamine hirsuta HOM05D006603 ORTHO05D007786 1.8e-22 109.8 130 53.1
Rhsim02G0047700 Rhododendron simsii HOM05D006603 ORTHO05D007786 6.9e-22 107.8 121 47.9
BolC8t46924H Brassica oleracea HOM05D006603 ORTHO05D007786 9.0e-22 107.5 142 51.4
BolC8t46925H Brassica oleracea HOM05D006603 ORTHO05D007786 9.0e-22 107.5 144 51.4
Dinv27124 Davidia involucrata HOM05D006603 ORTHO05D007786 9.0e-22 107.5 77 68.8
Gorai.006G254700 Gossypium raimondii HOM05D006603 ORTHO05D007786 9.0e-22 107.5 121 50.4
BolC8t46928H Brassica oleracea HOM05D006603 ORTHO05D007786 1.2e-21 107.1 142 51.4
Prupe.1G050700 Prunus persica HOM05D006603 ORTHO05D007786 1.2e-21 107.1 111 52.3
Cfa014800 Carpinus fangiana HOM05D006603 ORTHO05D007786 1.5e-21 106.7 77 67.5
FAN17G1046 Fragaria x ananassa HOM05D006603 ORTHO05D007786 2.0e-21 106.3 89 59.6
BolC8t46922H Brassica oleracea HOM05D006603 ORTHO05D007786 3.4e-21 105.5 142 50.7
AUR62015239 Chenopodium quinoa HOM05D006603 ORTHO05D007786 5.8e-21 104.8 117 48.7
A08p36880 Brassica napus HOM05D006603 ORTHO05D007786 7.6e-21 104.4 142 51.4
AUR62018035 Chenopodium quinoa HOM05D006603 ORTHO05D007786 7.6e-21 104.4 117 47.9
Zm00001eb191430 Zea mays HOM05D006603 ORTHO05D007786 1.7e-20 103.2 90 60.0
ClCG06G007300 Citrullus lanatus HOM05D006603 ORTHO05D007786 2.2e-20 102.8 146 40.4
SalBow2G0496 Salvia bowleyana HOM05D006603 ORTHO05D007786 3.8e-20 102.1 124 50.0
BcaC07g36903 Brassica carinata HOM05D006603 ORTHO05D007786 4.9e-20 101.7 135 53.3
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 4.9e-20 101.7 127 48.0
unitig_32.g11693 Utricularia gibba HOM05D006603 ORTHO05D007786 6.4e-20 101.3 166 39.2
COL.COLO4_15990 Corchorus olitorius HOM05D006603 ORTHO05D007786 1.4e-19 100.1 121 47.1
Ah.04g153810 Amaranthus hybridus HOM05D006603 ORTHO05D007786 1.9e-19 99.8 117 48.7
Sed0025873 Sechium edule HOM05D006603 ORTHO05D007786 2.7e-18 95.9 121 44.6
BcaB03g13488 Brassica carinata HOM05D006603 ORTHO05D007786 1.1e-16 90.5 127 44.9
HPP92_020757 Vanilla planifolia HOM05D006603 ORTHO05D007786 1.1e-16 90.5 138 37.0
C05p02730 Brassica napus HOM05D001210 ORTHO05D001036 1.5e-16 90.1 110 46.4
Cpa.g.sc59.20 Carica papaya HOM05D006603 ORTHO05D007786 1.3e-15 87.0 70 60.0
arahy.Tifrunner.gnm1.ann1.QP5CHE Arachis hypogaea HOM05D006603 ORTHO05D007786 2.1e-15 86.3 119 45.4
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 3.6e-15 85.5 89 57.3
BraA08t35589Z Brassica rapa HOM05D003335 ORTHO05D003853 1.8e-14 83.2 89 56.2
BraA09t42112Z Brassica rapa HOM05D000117 ORTHO05D007786 2.4e-14 82.8 88 56.8
arahy.Tifrunner.gnm1.ann1.YUK4FD Arachis hypogaea HOM05D006603 ORTHO05D007786 2.4e-11 72.8 141 36.9
Sabra10G0042500 Salix brachista HOM05D006603 ORTHO05D007786 2.4e-11 72.8 85 47.1
arahy.Tifrunner.gnm1.ann1.M12JR8 Arachis hypogaea HOM05D006603 ORTHO05D007786 4.6e-10 68.6 142 36.6
Nitab4.5_0001041g0050 Nicotiana tabacum HOM05D006603 ORTHO05D007786 3.9e-09 65.5 36 88.9
SMO271G0137 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 8.7e-09 64.3 143 33.6
arahy.Tifrunner.gnm1.ann1.49WF5R Arachis hypogaea HOM05D006603 ORTHO05D007786 1.5e-08 63.5 83 45.8
GSVIVG01027940001 Vitis vinifera HOM05D006603 ORTHO05D015671 1.9e-08 63.2 72 52.8
arahy.Tifrunner.gnm1.ann1.N50CGY Arachis hypogaea HOM05D006603 ORTHO05D007786 3.3e-08 62.4 83 45.8
SMO308G0045 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 9.6e-08 60.8 136 33.8
CSS0022390 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 3.7e-07 58.9 140 35.7
Hma1.2p1_0982F.1_g243900 Hydrangea macrophylla HOM05D002103 ORTHO05D004020 4.8e-07 58.5 140 32.1
C08p52130 Brassica napus HOM05D000117 ORTHO05D001036 6.2e-07 58.2 63 50.8
Pp3c12_23290 Physcomitrium patens HOM05D002103 ORTHO05D004020 8.1e-07 57.8 154 28.6
Actinidia23265 Actinidia chinensis HOM05D002103 ORTHO05D004020 1.1e-06 57.4 141 34.8
SMO144G0051 Selaginella moellendorffii HOM05D002103 ORTHO05D007786 1.1e-06 57.4 138 29.0
AagrBONN_evm.TU.Sc2ySwM_228.3673 Anthoceros agrestis HOM05D002103 ORTHO05D004020 4.0e-06 55.5 140 30.7
Gohir.A06G017200 Gossypium hirsutum HOM05D002103 ORTHO05D004020 4.0e-06 55.5 135 31.1
Gohir.D06G015300 Gossypium hirsutum HOM05D002103 ORTHO05D004020 4.0e-06 55.5 135 31.9
CiPaw.16G045800 Carya illinoinensis HOM05D002103 ORTHO05D004020 5.3e-06 55.1 146 30.8
TAR625G1123 Trochodendron aralioides HOM05D002103 ORTHO05D004020 6.9e-06 54.7 147 32.0
SEGI_34793 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 9.0e-06 54.3 67 43.3


User provided reference genes

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