Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 3.8e-84 314.7 149 100.0
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 3.8e-84 314.7 149 100.0
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 5.5e-83 310.8 149 98.7
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 1.6e-82 309.3 148 98.0
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 1.0e-81 306.6 149 96.0
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 4.1e-78 294.7 149 89.9
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 9.1e-78 293.5 149 89.9
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 5.5e-75 284.3 149 87.2
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 5.5e-75 284.3 149 87.2
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 1.6e-74 282.7 148 85.1
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 2.7e-74 282.0 149 85.9
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 8.0e-74 280.4 149 85.2
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 1.0e-73 280.0 149 85.2
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 4.0e-73 278.1 148 85.1
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 8.8e-73 276.9 148 83.8
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.5e-72 276.2 148 83.1
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 1.3e-71 273.1 147 85.7
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 1.7e-71 272.7 149 83.2
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 4.8e-71 271.2 149 81.9
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 1.1e-70 270.0 148 81.8
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 1.4e-70 269.6 147 84.4
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 1.4e-70 269.6 147 83.7
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.4e-70 269.6 149 83.2
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.8e-70 269.2 149 83.2
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 2.4e-70 268.9 149 81.9
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 3.1e-70 268.5 145 84.1
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 4.1e-70 268.1 149 80.5
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 7.0e-70 267.3 149 82.6
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 3.5e-69 265.0 149 78.5
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 5.9e-69 264.2 148 79.1
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 1.0e-68 263.5 148 79.1
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 1.0e-68 263.5 148 81.1
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 2.3e-68 262.3 145 80.0
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 2.3e-68 262.3 146 82.9
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 2.9e-68 261.9 148 81.1
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 3.8e-68 261.5 149 79.2
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 8.6e-68 260.4 147 80.3
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 1.1e-67 260.0 147 80.3
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.9e-67 259.2 144 83.3
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 1.9e-67 259.2 148 80.4
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 4.2e-67 258.1 139 84.9
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 9.5e-67 256.9 148 79.7
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 9.5e-67 256.9 149 77.9
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 2.1e-66 255.8 139 84.2
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 2.8e-66 255.4 149 77.9
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 3.6e-66 255.0 147 77.6
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 3.6e-66 255.0 147 78.9
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 4.7e-66 254.6 139 84.2
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 4.7e-66 254.6 139 83.5
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 4.7e-66 254.6 139 82.7
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 8.0e-66 253.8 147 76.2
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 1.0e-65 253.4 147 76.9
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 1.8e-65 252.7 147 75.5
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 5.2e-65 251.1 149 75.2
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 8.9e-65 250.4 143 77.6
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.2e-64 250.0 144 77.8
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 2.6e-64 248.8 147 76.2
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 3.4e-64 248.4 147 76.9
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 4.4e-64 248.1 147 75.5
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 4.4e-64 248.1 149 75.8
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 4.4e-64 248.1 147 75.5
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 7.5e-64 247.3 147 75.5
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 7.5e-64 247.3 149 74.5
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 9.8e-64 246.9 146 76.0
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 1.3e-63 246.5 147 76.9
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 1.3e-63 246.5 149 75.2
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 1.3e-63 246.5 147 74.1
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 2.2e-63 245.7 147 76.2
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.8e-63 245.4 149 73.8
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 4.9e-63 244.6 147 75.5
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 4.9e-63 244.6 147 74.1
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 4.9e-63 244.6 147 74.1
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 4.9e-63 244.6 147 74.1
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 4.9e-63 244.6 147 74.1
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 6.3e-63 244.2 147 73.5
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 1.4e-62 243.0 143 75.5
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 1.4e-62 243.0 143 75.5
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.8e-62 242.7 150 74.0
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 1.8e-62 242.7 143 75.5
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 2.4e-62 242.3 143 75.5
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 2.4e-62 242.3 147 78.2
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 4.1e-62 241.5 147 73.5
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 4.1e-62 241.5 147 72.8
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 4.1e-62 241.5 147 72.8
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 7.0e-62 240.7 149 75.2
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 9.2e-62 240.4 149 71.8
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 9.2e-62 240.4 144 74.3
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 1.2e-61 240.0 147 72.8
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 1.6e-61 239.6 147 72.8
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 2.0e-61 239.2 142 73.2
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 2.0e-61 239.2 149 72.5
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 2.0e-61 239.2 149 72.5
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 4.5e-61 238.0 146 73.3
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 4.5e-61 238.0 142 73.9
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 1.3e-60 236.5 143 72.7
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 6.6e-60 234.2 143 72.0
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 8.6e-60 233.8 141 73.8
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.1e-59 233.4 143 72.7
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 2.5e-59 232.3 139 74.8
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 2.5e-59 232.3 142 71.8
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 5.6e-59 231.1 150 69.3
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.2e-58 229.9 143 70.6
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.6e-58 229.6 124 86.3
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 2.1e-58 229.2 148 69.6
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 2.8e-58 228.8 149 67.8
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 4.7e-58 228.0 144 70.8
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 4.7e-58 228.0 136 74.3
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 6.1e-58 227.6 144 72.2
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 6.8e-57 224.2 142 70.4
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 9.8e-56 220.3 146 67.1
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 4.9e-55 218.0 143 67.8
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 1.1e-54 216.9 152 70.4
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 5.4e-54 214.5 147 66.7
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 1.6e-53 213.0 150 65.3
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 5.2e-49 198.0 109 83.5
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 2.7e-45 185.7 147 61.9
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 2.1e-42 176.0 149 52.3
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 6.2e-42 174.5 123 64.2
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 1.4e-41 173.3 149 52.3
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 8.9e-41 170.6 129 60.5
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 8.3e-39 164.1 149 57.7
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 3.2e-38 162.2 123 61.0
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 7.1e-38 161.0 103 71.8
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 2.7e-37 159.1 150 52.0
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 1.5e-35 153.3 92 75.0
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 3.3e-35 152.1 126 56.3
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 2.1e-34 149.4 150 50.0
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 3.1e-33 145.6 150 48.7
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 2.2e-31 139.4 149 48.3
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 1.9e-30 136.3 90 71.1
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 5.4e-30 134.8 133 53.4
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 7.1e-30 134.4 162 48.8
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 1.2e-29 133.7 162 48.8
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 1.0e-28 130.6 151 43.0
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 2.3e-28 129.4 150 45.3
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 6.2e-26 121.3 67 86.6
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 8.7e-20 100.9 123 43.1
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 3.8e-15 85.5 62 62.9
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 1.0e-12 77.4 53 66.0
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 5.1e-12 75.1 120 36.7
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 3.3e-11 72.4 62 59.7
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.1e-09 67.4 58 53.4
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 2.4e-09 66.2 48 60.4
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 3.8e-07 58.9 43 62.8
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 8.4e-07 57.8 46 56.5


User provided reference genes

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