Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 2.9e-282 974.5 483 100.0
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 1.9e-273 945.3 483 97.1
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 9.3e-273 943.0 483 96.7
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 4.2e-257 891.0 483 90.7
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 7.1e-257 890.2 483 91.3
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 1.5e-254 882.5 484 91.1
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 4.4e-222 774.6 486 78.0
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 5.7e-222 774.2 483 78.5
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 2.2e-218 762.3 497 76.1
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 5.5e-217 757.7 487 76.4
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 3.6e-216 755.0 486 75.1
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 4.7e-216 754.6 484 76.0
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 2.3e-215 752.3 486 74.7
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 1.5e-214 749.6 486 76.1
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 1.5e-214 749.6 464 77.4
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 2.0e-214 749.2 484 76.0
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 4.4e-214 748.0 483 76.4
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 1.7e-213 746.1 491 75.4
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 2.2e-213 745.7 486 76.3
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 1.1e-212 743.4 485 74.2
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 1.4e-212 743.0 487 74.5
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 4.1e-212 741.5 491 73.9
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 5.4e-212 741.1 487 74.9
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 7.0e-212 740.7 533 70.0
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 2.0e-211 739.2 485 74.0
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 5.9e-211 737.6 490 75.3
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 1.3e-210 736.5 484 75.2
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 1.7e-210 736.1 485 73.6
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 5.0e-210 734.6 489 74.0
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 6.5e-210 734.2 499 72.7
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 6.5e-210 734.2 491 74.7
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 1.1e-209 733.4 501 72.1
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 2.5e-209 732.3 484 74.4
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 4.2e-209 731.5 488 73.2
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 7.2e-209 730.7 484 74.8
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 1.6e-208 729.6 495 73.3
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 1.6e-208 729.6 527 69.6
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.6e-208 729.6 426 80.3
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 3.6e-208 728.4 481 74.0
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 6.8e-207 724.2 490 73.7
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 1.5e-206 723.0 487 74.3
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 2.6e-206 722.2 451 76.5
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 2.2e-205 719.2 493 72.8
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 3.7e-205 718.4 464 73.9
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 4.9e-205 718.0 488 73.8
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 6.3e-205 717.6 432 77.5
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 1.4e-204 716.5 488 70.5
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 5.4e-204 714.5 522 69.7
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 2.0e-203 712.6 425 77.2
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 4.5e-203 711.4 459 75.4
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 7.8e-203 710.7 488 71.5
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 7.8e-203 710.7 432 75.9
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 1.0e-202 710.3 486 71.6
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 3.8e-202 708.4 461 74.0
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 3.8e-202 708.4 464 73.9
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 3.8e-202 708.4 425 77.2
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 5.0e-202 708.0 487 70.6
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 5.0e-202 708.0 425 76.7
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 6.6e-202 707.6 487 70.4
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 8.6e-202 707.2 491 70.5
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 2.5e-201 705.7 455 75.2
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 7.3e-201 704.1 487 70.6
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 7.3e-201 704.1 493 70.4
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 9.5e-201 703.7 488 72.1
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 2.1e-200 702.6 483 70.8
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 2.1e-200 702.6 490 72.2
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 2.8e-200 702.2 492 69.9
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 3.6e-200 701.8 450 75.3
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 4.7e-200 701.4 483 69.6
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 6.1e-200 701.0 456 74.3
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 1.8e-199 699.5 486 69.5
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 2.3e-199 699.1 483 71.4
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 2.3e-199 699.1 487 69.4
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 5.2e-199 698.0 485 69.5
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 5.2e-199 698.0 485 69.5
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 2.0e-198 696.0 483 71.2
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 9.8e-198 693.7 484 69.4
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 9.8e-198 693.7 484 69.4
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 2.2e-197 692.6 425 76.0
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 2.2e-197 692.6 437 75.7
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 2.4e-196 689.1 425 76.0
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 7.0e-196 687.6 437 76.9
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 9.2e-196 687.2 445 74.4
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 2.7e-195 685.6 424 74.5
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 1.6e-192 676.4 433 74.1
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 6.8e-191 671.0 421 76.2
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 2.9e-189 665.6 401 77.3
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 8.3e-189 664.1 405 76.8
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 1.6e-187 659.8 390 82.6
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.5e-185 653.3 545 62.8
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 1.9e-185 652.9 453 70.0
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 4.3e-185 651.7 461 68.5
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 2.8e-184 649.0 459 72.1
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 6.2e-184 647.9 378 80.4
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 2.6e-182 642.5 483 66.3
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 9.2e-180 634.0 487 67.6
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 8.6e-178 627.5 378 78.6
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 2.4e-175 619.4 472 63.8
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 2.0e-174 616.3 435 70.1
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 4.4e-174 615.1 411 71.5
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 7.8e-171 604.4 394 72.8
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 1.5e-169 600.1 441 65.1
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 1.2e-166 590.5 476 63.0
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 5.4e-164 581.6 492 61.4
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 8.7e-162 574.3 378 73.8
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 3.3e-161 572.4 341 77.7
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 1.1e-159 567.4 503 55.5
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 3.9e-154 548.9 413 64.6
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 2.6e-150 536.2 472 57.8
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 2.2e-149 533.1 377 69.0
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 2.1e-144 516.5 497 53.5
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 1.9e-140 503.4 326 73.9
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 5.3e-119 432.2 256 78.9
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 2.5e-116 423.3 391 54.7
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 4.4e-113 412.5 297 67.0
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 4.4e-113 412.5 297 67.0
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 1.2e-110 404.4 348 58.0
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 1.3e-104 384.4 299 63.5
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 5.5e-100 369.0 270 67.4
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 3.6e-99 366.3 285 62.8
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 5.2e-98 362.5 294 62.6
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 1.2e-97 361.3 264 66.7
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 6.3e-88 328.9 383 45.4
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.1e-84 318.2 208 72.6
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 4.7e-83 312.8 234 71.4
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 4.3e-76 289.7 333 45.0
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 8.6e-69 265.4 252 55.6
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 3.6e-67 260.0 580 31.6
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 2.4e-50 204.1 473 31.9
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 3.3e-44 183.7 110 76.4
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 5.8e-41 172.9 150 62.7
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 3.5e-38 163.7 112 67.0
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 2.2e-32 144.4 95 74.7
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 2.3e-29 134.4 117 52.1
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 4.6e-22 110.2 69 76.8
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 8.7e-21 105.9 60 75.0
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 2.4e-18 97.8 92 54.3
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 2.0e-17 94.7 70 64.3
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 3.4e-17 94.0 69 63.8
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 3.4e-17 94.0 69 63.8
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 4.5e-17 93.6 68 64.7
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 4.5e-17 93.6 69 63.8
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 4.5e-17 93.6 69 63.8
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 5.9e-17 93.2 68 64.7
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 5.9e-17 93.2 69 63.8
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 7.7e-17 92.8 53 75.5
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 1.3e-16 92.0 69 62.3
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 1.7e-16 91.7 69 63.8
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 3.6e-14 84.0 69 62.3
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 1.1e-12 79.0 63 65.1
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 2.0e-09 68.2 85 42.4
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 5.5e-07 60.1 45 64.4
Oeu056605.1 Olea europaea HOM05D001875 ORTHO05D002019 9.4e-07 59.3 59 59.3
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 1.6e-06 58.5 51 51.0


User provided reference genes

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