Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 7.3e-121 437.2 212 100.0
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 9.2e-116 420.2 212 95.8
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 6.2e-112 407.5 204 96.1
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 3.9e-106 388.3 209 90.0
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 6.6e-106 387.5 207 88.9
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 4.0e-103 378.3 201 89.1
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 9.6e-97 357.1 201 84.1
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 1.7e-90 336.3 200 80.0
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 2.6e-86 322.4 190 78.4
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 1.7e-85 319.7 190 75.3
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 2.2e-85 319.3 193 75.1
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 1.1e-84 317.0 196 77.6
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 1.4e-84 316.6 184 79.3
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 4.6e-83 311.6 184 78.3
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.0e-82 310.5 200 73.5
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 1.3e-82 310.1 193 76.7
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 2.3e-82 309.3 196 73.0
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 8.7e-82 307.4 195 72.3
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 3.3e-81 305.4 189 75.1
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 4.3e-81 305.1 205 70.7
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 4.3e-81 305.1 194 74.2
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 5.6e-81 304.7 192 73.4
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 5.6e-81 304.7 192 73.4
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 3.6e-80 302.0 204 70.6
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 6.2e-80 301.2 198 71.7
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 8.1e-80 300.8 201 70.6
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 1.4e-79 300.1 201 69.2
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 2.4e-79 299.3 192 72.9
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 5.3e-79 298.1 204 70.6
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 3.4e-78 295.4 197 71.1
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 3.4e-78 295.4 193 73.1
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 9.9e-78 293.9 206 66.0
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 1.3e-77 293.5 199 68.8
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 2.9e-77 292.4 201 67.2
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 2.9e-77 292.4 199 68.3
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 4.9e-77 291.6 199 71.9
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 6.4e-77 291.2 196 71.4
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 1.1e-76 290.4 211 65.9
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 4.2e-76 288.5 196 69.9
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 5.4e-76 288.1 199 67.8
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 9.3e-76 287.3 219 65.8
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 9.3e-76 287.3 197 68.5
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 1.2e-75 287.0 204 66.7
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 2.1e-75 286.2 198 67.2
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 2.7e-75 285.8 199 65.8
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 4.6e-75 285.0 198 66.2
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 7.9e-75 284.3 194 69.1
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 7.9e-75 284.3 194 69.1
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 7.9e-75 284.3 199 65.3
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 7.9e-75 284.3 203 65.0
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 1.0e-74 283.9 189 69.3
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 1.0e-74 283.9 203 67.0
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 1.3e-74 283.5 195 69.7
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.8e-74 283.1 193 68.4
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 2.3e-74 282.7 199 65.3
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 3.0e-74 282.3 196 68.9
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 3.9e-74 282.0 200 66.5
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 3.9e-74 282.0 192 69.8
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 3.9e-74 282.0 193 67.4
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 5.1e-74 281.6 199 64.8
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 5.1e-74 281.6 200 67.0
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 5.1e-74 281.6 193 67.9
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 8.7e-74 280.8 201 67.2
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 8.7e-74 280.8 198 64.6
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 8.7e-74 280.8 198 64.6
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 1.9e-73 279.6 175 70.9
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 2.5e-73 279.3 194 70.1
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 7.4e-73 277.7 192 69.3
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 7.4e-73 277.7 195 68.2
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.6e-72 276.6 202 63.4
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 2.8e-72 275.8 182 71.4
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 2.8e-72 275.8 202 63.9
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 4.8e-72 275.0 199 66.3
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 6.2e-72 274.6 199 64.3
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 8.1e-72 274.2 199 63.3
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 3.1e-71 272.3 202 62.4
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 3.1e-71 272.3 195 65.1
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 4.0e-71 271.9 170 71.2
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 6.9e-71 271.2 192 63.5
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 9.0e-71 270.8 201 65.7
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 1.2e-70 270.4 195 65.1
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 1.2e-70 270.4 198 64.1
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 2.0e-70 269.6 165 75.2
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 2.6e-70 269.2 211 63.5
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 2.6e-70 269.2 211 63.5
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 4.5e-70 268.5 200 64.0
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 1.3e-69 266.9 207 59.4
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 2.9e-69 265.8 193 63.2
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 4.9e-69 265.0 200 64.0
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 4.9e-69 265.0 198 66.2
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 1.9e-68 263.1 192 63.0
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 2.1e-67 259.6 168 67.9
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 4.6e-67 258.5 167 68.9
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 1.3e-66 256.9 146 78.8
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 3.9e-66 255.4 175 63.4
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 6.7e-66 254.6 191 60.7
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 1.1e-65 253.8 198 61.1
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 1.5e-65 253.4 198 62.6
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 7.4e-65 251.1 196 59.2
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 2.8e-64 249.2 166 63.9
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 4.8e-64 248.4 193 65.3
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 6.2e-64 248.1 153 74.5
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 8.2e-64 247.7 173 65.3
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 8.2e-64 247.7 189 62.4
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 5.3e-63 245.0 202 59.4
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 6.9e-63 244.6 174 64.4
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 7.6e-62 241.1 203 57.1
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 1.1e-60 237.3 173 61.8
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 1.1e-60 237.3 189 59.3
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 9.3e-60 234.2 203 54.7
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 2.7e-59 232.6 166 71.7
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 3.5e-59 232.3 203 54.2
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 3.5e-59 232.3 203 54.2
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 4.6e-59 231.9 203 54.2
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 2.3e-58 229.6 203 53.2
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 2.2e-56 223.0 192 53.1
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 1.1e-55 220.7 301 42.5
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 7.7e-54 214.5 129 74.4
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 9.4e-52 207.6 176 55.1
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 1.4e-50 203.8 204 47.5
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 1.8e-50 203.4 168 54.8
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 1.1e-47 194.1 159 62.3
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 3.1e-47 192.6 124 74.2
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 6.9e-47 191.4 155 63.2
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 7.9e-43 177.9 165 50.3
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 2.4e-39 166.4 168 52.4
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 9.1e-39 164.5 204 41.2
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 5.5e-36 155.2 166 48.2
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 2.0e-33 146.7 159 46.5
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 6.3e-32 141.7 192 39.6
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 1.8e-31 140.2 172 39.0
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 3.1e-31 139.4 194 36.6
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 1.3e-29 134.0 169 42.0
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 4.4e-25 119.0 78 64.1
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 1.8e-18 97.1 198 33.3
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 7.5e-17 91.7 63 55.6
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 2.3e-13 80.1 62 54.8
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 2.5e-12 76.6 58 60.3
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 5.2e-10 68.9 153 32.0
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 2.9e-08 63.2 71 43.7


User provided reference genes

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