Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001348 Solanum tuberosum HOM05D003516 ORTHO05D004068 1.7e-196 689.1 339 100.0
Sopen02g033240 Solanum pennellii HOM05D003516 ORTHO05D004068 1.3e-175 619.8 323 95.0
CAN.G206.193 Capsicum annuum HOM05D003516 ORTHO05D004068 3.8e-164 581.6 323 89.5
Nitab4.5_0000565g0040 Nicotiana tabacum HOM05D003516 ORTHO05D004068 7.4e-160 567.4 324 86.7
Nitab4.5_0003216g0010 Nicotiana tabacum HOM05D003516 ORTHO05D004068 1.2e-157 560.1 324 85.5
Nitab4.5_0008573g0020 Nicotiana tabacum HOM05D003516 ORTHO05D004068 2.6e-157 558.9 322 85.4
Sopen02g033200 Solanum pennellii HOM05D003516 ORTHO05D004068 1.1e-155 553.5 324 84.9
PGSC0003DMG402001347 Solanum tuberosum HOM05D003516 ORTHO05D004068 5.5e-155 551.2 323 83.3
Solyc02g088490.3 Solanum lycopersicum HOM05D003516 ORTHO05D004068 1.2e-154 550.1 324 84.3
Nitab4.5_0008573g0050 Nicotiana tabacum HOM05D003516 ORTHO05D004068 6.1e-154 547.7 324 84.0
Nitab4.5_0000565g0050 Nicotiana tabacum HOM05D003516 ORTHO05D004068 1.2e-152 543.5 322 83.9
PGSC0003DMG401001347 Solanum tuberosum HOM05D003516 ORTHO05D004068 1.3e-151 540.0 324 83.0
CAN.G206.192 Capsicum annuum HOM05D003516 ORTHO05D004068 4.1e-150 535.0 324 81.5
PGSC0003DMG400001349 Solanum tuberosum HOM05D003516 ORTHO05D004068 6.8e-145 517.7 322 81.7
CiPaw.03G092000 Carya illinoinensis HOM05D003516 ORTHO05D004068 7.7e-141 504.2 322 75.5
Potri.004G126100 Populus trichocarpa HOM05D003516 ORTHO05D004068 1.2e-138 496.9 324 73.5
Atru.chr2.3146 Acer truncatum HOM05D003516 ORTHO05D004068 4.7e-138 495.0 326 74.5
Manes.01G099500 Manihot esculenta HOM05D003516 ORTHO05D004068 4.7e-138 495.0 326 71.5
CSS0008989 Camellia sinensis var. sinensis HOM05D003516 ORTHO05D004068 1.0e-137 493.8 322 73.3
Sabra04G0066900 Salix brachista HOM05D003516 ORTHO05D004068 1.8e-137 493.0 331 71.9
TAR371G0601 Trochodendron aralioides HOM05D003516 ORTHO05D004068 1.5e-136 490.0 326 73.9
QL02p039347 Quercus lobata HOM05D003516 ORTHO05D004068 2.0e-136 489.6 324 74.1
Cfa007618 Carpinus fangiana HOM05D003516 ORTHO05D004068 5.7e-136 488.0 323 73.7
TWI34G1153 Tripterygium wilfordii HOM05D003516 ORTHO05D004068 1.7e-135 486.5 326 71.8
Prupe.3G260300 Prunus persica HOM05D003516 ORTHO05D004068 4.9e-135 485.0 323 74.0
Sc14g0006110 Simmondsia chinensis HOM05D003516 ORTHO05D004068 4.9e-135 485.0 323 72.4
Actinidia01972 Actinidia chinensis HOM05D003516 ORTHO05D004068 6.3e-135 484.6 322 72.0
TAR371G1100 Trochodendron aralioides HOM05D003516 ORTHO05D004068 1.4e-134 483.4 325 72.6
VMungo1383G2485 Vigna mungo HOM05D003516 ORTHO05D004068 1.4e-134 483.4 322 71.1
Ciclev10011701m.g Citrus clementina HOM05D003516 ORTHO05D004068 2.4e-134 482.6 326 72.1
MD09G1060600 Malus domestica HOM05D003516 ORTHO05D004068 3.1e-134 482.3 323 73.4
Peaxi162Scf00166g00944 Petunia axillaris HOM05D003516 ORTHO05D004068 3.1e-134 482.3 326 74.2
TWI34G0121 Tripterygium wilfordii HOM05D003516 ORTHO05D004068 9.2e-134 480.7 326 70.6
Phvul.008G040100 Phaseolus vulgaris HOM05D003516 ORTHO05D004068 1.6e-133 479.9 323 70.9
arahy.Tifrunner.gnm1.ann1.0J6LH7 Arachis hypogaea HOM05D003516 ORTHO05D004068 2.0e-133 479.6 324 71.6
RcHm_v2.0_Chr2g0166731 Rosa chinensis HOM05D003516 ORTHO05D004068 7.8e-133 477.6 322 72.0
Cc07_g03810 Coffea canephora HOM05D003516 ORTHO05D004068 1.3e-132 476.9 326 71.2
Rhsim10G0034300 Rhododendron simsii HOM05D003516 ORTHO05D004068 2.3e-132 476.1 324 71.3
RcHm_v2.0_Chr2g0166771 Rosa chinensis HOM05D003516 ORTHO05D004068 3.8e-132 475.3 322 71.4
FAN05G5016 Fragaria x ananassa HOM05D003516 ORTHO05D004068 1.1e-131 473.8 322 70.5
Glyma.08G241300 Glycine max HOM05D003516 ORTHO05D004068 1.5e-131 473.4 324 70.4
Thecc.04G089600 Theobroma cacao HOM05D003516 ORTHO05D004068 1.5e-131 473.4 326 71.5
vmacro05670 Vaccinium macrocarpon HOM05D003516 ORTHO05D004068 1.5e-131 473.4 325 71.4
Cpa.g.sc14.137 Carica papaya HOM05D003516 ORTHO05D004068 1.9e-131 473.0 326 71.2
DCAR_011066 Daucus carota HOM05D003516 ORTHO05D004068 1.9e-131 473.0 324 71.9
FvH4_6g47610 Fragaria vesca HOM05D003516 ORTHO05D004068 1.9e-131 473.0 322 70.5
PSO541G0811 Papaver somniferum HOM05D003516 ORTHO05D004068 1.9e-131 473.0 322 69.6
SalBow1G1829 Salvia bowleyana HOM05D003516 ORTHO05D004068 1.9e-131 473.0 323 69.3
Ah.12g062520 Amaranthus hybridus HOM05D003516 ORTHO05D004068 2.5e-131 472.6 323 69.7
Lsat_1_v5_gn_2_87981 Lactuca sativa HOM05D003516 ORTHO05D004068 2.5e-131 472.6 322 71.7
Lj1g0021677 Lotus japonicus HOM05D003516 ORTHO05D004068 3.3e-131 472.2 324 70.4
Eucgr.J01366 Eucalyptus grandis HOM05D003516 ORTHO05D004068 4.3e-131 471.9 325 69.5
Hund15565 Selenicereus undatus HOM05D003516 ORTHO05D004068 4.3e-131 471.9 323 71.5
Nn4g23324 Nelumbo nucifera HOM05D003516 ORTHO05D004068 9.5e-131 470.7 312 73.4
AUR62018134 Chenopodium quinoa HOM05D003516 ORTHO05D004068 1.2e-130 470.3 323 71.2
PSO675G4642 Papaver somniferum HOM05D003516 ORTHO05D004068 1.2e-130 470.3 322 68.9
Hma1.2p1_0255F.1_g103250 Hydrangea macrophylla HOM05D003516 ORTHO05D004068 4.7e-130 468.4 322 71.1
SalBow1G1268 Salvia bowleyana HOM05D003516 ORTHO05D004068 4.7e-130 468.4 323 68.7
Medtr7g011890 Medicago truncatula HOM05D003516 ORTHO05D004068 2.3e-129 466.1 324 69.4
MSTRG.3024 Avicennia marina HOM05D003516 ORTHO05D004068 8.9e-129 464.2 323 67.8
Ca_04330_v3 Cicer arietinum L. HOM05D003516 ORTHO05D004068 1.2e-128 463.8 325 69.8
MELO3C009836.2 Cucumis melo HOM05D003516 ORTHO05D004068 3.4e-128 462.2 322 68.6
Migut.H00662 Erythranthe guttata HOM05D003516 ORTHO05D004068 3.4e-128 462.2 321 70.4
RcHm_v2.0_Chr2g0166761 Rosa chinensis HOM05D003516 ORTHO05D004068 3.4e-128 462.2 322 68.9
Duzib264G1026 Durio zibethinus HOM05D003516 ORTHO05D004068 4.4e-128 461.8 326 69.9
AUR62034473 Chenopodium quinoa HOM05D003516 ORTHO05D004068 9.8e-128 460.7 322 69.9
COL.COLO4_12254 Corchorus olitorius HOM05D003516 ORTHO05D004068 1.3e-127 460.3 344 68.3
FAN09G4649 Fragaria x ananassa HOM05D003516 ORTHO05D004068 1.7e-127 459.9 332 67.5
TAR371G1088 Trochodendron aralioides HOM05D003516 ORTHO05D004068 1.7e-127 459.9 372 63.2
Gohir.D04G045800 Gossypium hirsutum HOM05D003516 ORTHO05D004068 3.7e-127 458.8 326 69.6
Gorai.012G051000 Gossypium raimondii HOM05D003516 ORTHO05D004068 3.7e-127 458.8 326 69.6
HanXRQChr14g0448681 Helianthus annuus HOM05D003516 ORTHO05D004068 4.9e-127 458.4 323 70.6
ECA238G0029 Erigeron canadensis HOM05D003516 ORTHO05D004068 8.3e-127 457.6 323 70.6
ECA238G2285 Erigeron canadensis HOM05D003516 ORTHO05D004068 8.3e-127 457.6 323 70.6
Atru.chr2.2165 Acer truncatum HOM05D003516 ORTHO05D004068 1.1e-126 457.2 324 67.9
MBI19_g41331_MAGBIO Magnolia biondii HOM05D003516 ORTHO05D004068 2.4e-126 456.1 326 67.8
Gohir.A05G369500 Gossypium hirsutum HOM05D003516 ORTHO05D004068 5.4e-126 454.9 328 68.6
TPR.G33465 Trifolium pratense HOM05D003516 ORTHO05D004068 9.2e-126 454.1 325 67.4
EL10Ac2g03040 Beta vulgaris HOM05D003516 ORTHO05D004068 2.7e-125 452.6 372 61.8
Lalb_Chr17g0337081 Lupinus albus HOM05D003516 ORTHO05D004068 3.5e-125 452.2 324 67.9
FvH4_6g47700 Fragaria vesca HOM05D003516 ORTHO05D004068 4.6e-125 451.8 322 68.0
CsaV3_3G041030 Cucumis sativus L. HOM05D003516 ORTHO05D004068 7.8e-125 451.1 322 67.4
FvH4_6g47650 Fragaria vesca HOM05D003516 ORTHO05D004068 7.8e-125 451.1 322 68.3
CARHR262950 Cardamine hirsuta HOM05D003516 ORTHO05D004068 1.0e-124 450.7 321 66.7
BcaB06g27324 Brassica carinata HOM05D003516 ORTHO05D004068 1.3e-124 450.3 321 65.4
Thhalv10027760m.g Eutrema salsugineum HOM05D003516 ORTHO05D004068 1.7e-124 449.9 321 65.7
BcaB06g27298 Brassica carinata HOM05D003516 ORTHO05D004068 5.0e-124 448.4 321 65.4
BolC4t26158H Brassica oleracea HOM05D003516 ORTHO05D004068 5.0e-124 448.4 321 65.4
BraA04t16875Z Brassica rapa HOM05D003516 ORTHO05D004068 5.0e-124 448.4 321 65.4
FAN14G0784 Fragaria x ananassa HOM05D003516 ORTHO05D004068 5.0e-124 448.4 322 67.7
AL7G50920 Arabidopsis lyrata HOM05D003516 ORTHO05D004068 6.6e-124 448.0 321 65.7
AT5G39410 Arabidopsis thaliana HOM05D003516 ORTHO05D004068 1.9e-123 446.4 321 65.1
Aa31LG9G16580 Aethionema arabicum HOM05D003516 ORTHO05D004068 3.3e-123 445.7 322 66.5
Carub.0007s3653 Capsella rubella HOM05D003516 ORTHO05D004068 4.3e-123 445.3 321 65.1
SGA_v2.0_scaffold4G02421 Striga asiatica HOM05D003516 ORTHO05D004068 4.3e-123 445.3 324 66.0
Sp7g02570 Schrenkiella parvula HOM05D003516 ORTHO05D004068 5.6e-123 444.9 321 64.5
unitig_744.g24003 Utricularia gibba HOM05D003516 ORTHO05D004068 7.3e-123 444.5 325 63.4
C04p45730 Brassica napus HOM05D003516 ORTHO05D004068 1.2e-122 443.7 321 64.8
MSTRG.23906 Avicennia marina HOM05D003516 ORTHO05D004068 2.3e-121 439.5 323 65.0
A04p12100 Brassica napus HOM05D003516 ORTHO05D004068 3.1e-121 439.1 324 64.8
Glyma.13G059300 Glycine max HOM05D003516 ORTHO05D004068 4.4e-120 435.3 323 63.8
Lalb_Chr02g0159071 Lupinus albus HOM05D003516 ORTHO05D004068 4.4e-120 435.3 321 63.6
CDE04G1400 Ceratophyllum demersum HOM05D003516 ORTHO05D004068 7.5e-120 434.5 323 65.0
Nn4g23326 Nelumbo nucifera HOM05D003516 ORTHO05D004068 1.3e-119 433.7 323 67.2
Aqoxy3G03552 Aquilegia oxysepala HOM05D003516 ORTHO05D004068 1.1e-118 430.6 322 66.8
HanXRQChr14g0448661 Helianthus annuus HOM05D003516 ORTHO05D004068 1.1e-118 430.6 322 64.9
THA.LOC104823897 Tarenaya hassleriana HOM05D003516 ORTHO05D004068 5.4e-118 428.3 322 63.4
ATR0111G016 Amborella trichopoda HOM05D003516 ORTHO05D004068 1.2e-117 427.2 326 63.5
ECA238G1443 Erigeron canadensis HOM05D003516 ORTHO05D004068 7.8e-117 424.5 324 64.5
Phvul.004G033000 Phaseolus vulgaris HOM05D003516 ORTHO05D004068 2.3e-116 422.9 323 61.3
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 8.6e-116 421.0 297 67.3
arahy.Tifrunner.gnm1.ann1.BNNE9K Arachis hypogaea HOM05D003516 ORTHO05D004068 2.5e-115 419.5 321 61.7
Lsat_1_v5_gn_2_88001 Lactuca sativa HOM05D003516 ORTHO05D004068 2.5e-115 419.5 322 63.7
Lj2g0008898 Lotus japonicus HOM05D003516 ORTHO05D004068 4.3e-115 418.7 327 59.9
VMungo0464G1139 Vigna mungo HOM05D003516 ORTHO05D004068 1.2e-114 417.2 323 60.4
FAN14G3818 Fragaria x ananassa HOM05D003516 ORTHO05D004068 3.6e-114 415.6 322 63.0
Medtr4g094268 Medicago truncatula HOM05D003516 ORTHO05D004068 4.7e-114 415.2 322 59.0
Dinv11492 Davidia involucrata HOM05D003516 ORTHO05D004068 6.2e-114 414.8 322 67.7
TPR.G26192 Trifolium pratense HOM05D003516 ORTHO05D004068 8.1e-114 414.5 325 59.4
HPP92_020419 Vanilla planifolia HOM05D003516 ORTHO05D004068 5.2e-113 411.8 323 60.7
HPP92_023641 Vanilla planifolia HOM05D003516 ORTHO05D004068 6.8e-113 411.4 323 61.6
AUR62034468 Chenopodium quinoa HOM05D003516 ORTHO05D004068 1.2e-112 410.6 323 64.7
HPP92_023623 Vanilla planifolia HOM05D003516 ORTHO05D004068 4.4e-112 408.7 323 61.3
Zm00001eb326640 Zea mays HOM05D003516 ORTHO05D004068 7.5e-112 407.9 319 61.8
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 1.3e-111 407.1 309 65.4
Ca_04865_v3 Cicer arietinum L. HOM05D003516 ORTHO05D004068 8.3e-111 404.4 327 57.5
Psat1g069160 Pisum sativum HOM05D003516 ORTHO05D004068 9.2e-110 401.0 325 55.7
SEGI_01701 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 1.3e-108 397.1 324 57.4
ClCG10G015460 Citrullus lanatus HOM05D003516 ORTHO05D004068 1.7e-108 396.7 329 59.6
Lsat_1_v5_gn_2_88041 Lactuca sativa HOM05D003516 ORTHO05D004068 3.9e-108 395.6 323 61.6
arahy.Tifrunner.gnm1.ann1.3ST4SV Arachis hypogaea HOM05D003516 ORTHO05D004068 2.1e-106 389.8 321 58.6
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 4.4e-104 382.1 266 70.7
MELO3C009835.2 Cucumis melo HOM05D003516 ORTHO05D004068 9.2e-102 374.4 321 58.9
Lj4A115T83 Lonicera japonica HOM05D003516 ORTHO05D004068 1.2e-98 364.0 222 78.8
SEGI_26660 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 1.6e-98 363.6 324 55.6
PGR056G0004 Punica granatum HOM05D003516 ORTHO05D004068 8.1e-90 334.7 237 67.9
Sed0002556 Sechium edule HOM05D003516 ORTHO05D004068 1.4e-89 334.0 305 55.7
HanXRQChr14g0448671 Helianthus annuus HOM05D003516 ORTHO05D004068 1.8e-89 333.6 288 58.3
Pp3c7_23970 Physcomitrium patens HOM05D003516 ORTHO05D004068 4.0e-89 332.4 324 53.4
GSVIVG01011482001 Vitis vinifera HOM05D003516 ORTHO05D004068 9.0e-89 331.3 255 66.7
Psat0s4061g0240 Pisum sativum HOM05D003516 ORTHO05D004068 1.7e-87 327.0 224 69.6
Nn4g23327 Nelumbo nucifera HOM05D003516 ORTHO05D004068 1.1e-86 324.3 228 69.3
CsaV3_3G041020 Cucumis sativus L. HOM05D003516 ORTHO05D004068 1.9e-86 323.6 321 53.0
Mapoly0061s0022 Marchantia polymorpha HOM05D003516 ORTHO05D004068 1.6e-85 320.5 323 49.5
SMO364G0897 Selaginella moellendorffii HOM05D003516 ORTHO05D004068 2.1e-85 320.1 322 50.9
Psat7g019480 Pisum sativum HOM05D003516 ORTHO05D004068 1.6e-82 310.5 233 66.1
HanXRQChr17g0546731 Helianthus annuus HOM05D003516 ORTHO05D004068 4.2e-78 295.8 226 61.9
AagrBONN_evm.TU.Sc2ySwM_228.5734 Anthoceros agrestis HOM05D003516 ORTHO05D004068 4.6e-77 292.4 332 46.1
Os07g0597100 Oryza sativa ssp. japonica HOM05D003516 ORTHO05D004068 1.0e-76 291.2 218 62.4
Psat3g198560 Pisum sativum HOM05D003516 ORTHO05D004068 3.3e-75 286.2 325 49.5
SEGI_25923 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 3.8e-71 272.7 256 53.9
AagrBONN_evm.TU.Sc2ySwM_369.232 Anthoceros agrestis HOM05D003516 ORTHO05D004068 4.9e-71 272.3 327 44.6
Pp3c2_35640 Physcomitrium patens HOM05D003516 ORTHO05D004068 1.1e-67 261.2 268 47.4
AagrBONN_evm.TU.Sc2ySwM_344.722 Anthoceros agrestis HOM05D003516 ORTHO05D004068 4.3e-59 232.6 327 42.2
Lsat_1_v5_gn_3_88480 Lactuca sativa HOM05D003516 ORTHO05D004068 7.4e-59 231.9 233 52.8
Solyc02g088510.4 Solanum lycopersicum HOM05D003516 ORTHO05D004068 1.7e-55 220.7 115 93.0
SalBow1G7786 Salvia bowleyana HOM05D003516 ORTHO05D004068 4.7e-53 212.6 127 76.4
SalBow1G7636 Salvia bowleyana HOM05D003516 ORTHO05D004068 6.7e-52 208.8 159 63.5
Actinidia01964 Actinidia chinensis HOM05D003516 ORTHO05D004068 4.4e-51 206.1 145 66.9
Lsat_1_v5_gn_7_15281 Lactuca sativa HOM05D003516 ORTHO05D004068 1.1e-49 201.4 189 55.0
SMO364G0931 Selaginella moellendorffii HOM05D003516 ORTHO05D004068 2.0e-48 197.2 254 44.9
Psat3g198720 Pisum sativum HOM05D003516 ORTHO05D004068 4.7e-45 186.0 274 42.0
CSS0008212 Camellia sinensis var. sinensis HOM05D003516 ORTHO05D004068 6.5e-39 165.6 121 67.8
RcHm_v2.0_Chr4g0415091 Rosa chinensis HOM05D003516 ORTHO05D004068 1.5e-38 164.5 176 52.8
Nitab4.5_0000053g0020 Nicotiana tabacum HOM05D003516 ORTHO05D004068 2.6e-35 153.7 97 75.3
PRCOL_00005991 Prasinoderma coloniale HOM05D003516 ORTHO05D004068 6.3e-34 149.1 335 29.9
Lj4C115T4 Lonicera japonica HOM05D003516 ORTHO05D004068 8.3e-34 148.7 97 72.2
Lsat_1_v5_gn_4_58340 Lactuca sativa HOM05D003516 ORTHO05D004068 5.0e-31 139.4 124 58.9
Psat1g105360 Pisum sativum HOM05D003516 ORTHO05D004068 1.9e-30 137.5 98 69.4
HanXRQChr17g0546741 Helianthus annuus HOM05D003516 ORTHO05D004068 5.4e-25 119.4 137 48.9
RcHm_v2.0_Chr4g0415101 Rosa chinensis HOM05D003516 ORTHO05D004068 5.4e-25 119.4 96 59.4
CsaV3_3G041010 Cucumis sativus L. HOM05D003516 ORTHO05D004068 2.8e-21 107.1 97 52.6
Psat1g105320 Pisum sativum HOM05D003516 ORTHO05D004068 3.0e-20 103.6 65 73.8
SEGI_03289 Sequoiadendron giganteum HOM05D003516 ORTHO05D004068 1.5e-19 101.3 91 48.4
SalBow8G2541 Salvia bowleyana HOM05D003516 ORTHO05D004068 7.5e-19 99.0 208 35.6
Nn4g23325 Nelumbo nucifera HOM05D003516 ORTHO05D004068 4.3e-14 83.2 51 74.5
Lsat_1_v5_gn_4_89441 Lactuca sativa HOM05D003516 ORTHO05D004068 1.2e-13 81.6 60 61.7
AUR62043822 Chenopodium quinoa HOM05D000030 ORTHO05D000009 5.8e-11 72.8 48 72.9
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 4.1e-09 66.6 57 59.6
Medtr5g064760 Medicago truncatula HOM05D003516 ORTHO05D004068 2.7e-08 63.9 92 37.0
SalBow1G3591 Salvia bowleyana HOM05D020262 ORTHO05D004068 1.7e-07 61.2 62 50.0
SalBow8G5577 Salvia bowleyana HOM05D020262 ORTHO05D004068 1.7e-07 61.2 62 50.0
Lsat_1_v5_gn_3_33981 Lactuca sativa HOM05D003516 ORTHO05D004068 6.6e-07 59.3 33 75.8


User provided reference genes

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