Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 2.7e-110 402.1 219 100.0
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 5.4e-95 351.3 214 92.1
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 5.6e-84 314.7 215 81.9
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 8.1e-83 310.8 208 83.7
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 2.0e-81 306.2 211 82.5
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 2.5e-76 289.3 209 78.5
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 1.1e-55 220.7 131 93.1
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 6.3e-51 204.9 219 53.0
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 2.0e-49 199.9 222 55.0
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 1.1e-47 194.1 205 56.6
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 3.2e-47 192.6 208 54.8
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 4.2e-47 192.2 215 53.0
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 7.9e-46 188.0 197 57.4
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 1.0e-45 187.6 201 54.2
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 2.3e-45 186.4 215 53.5
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 5.1e-45 185.3 218 51.8
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 6.7e-45 184.9 220 50.9
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 5.7e-44 181.8 199 54.8
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 9.7e-44 181.0 207 53.6
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 1.7e-43 180.3 207 55.1
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 6.3e-43 178.3 217 51.2
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 6.3e-43 178.3 205 51.7
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.1e-42 177.6 213 52.1
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 1.1e-42 177.6 214 50.0
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.4e-42 177.2 209 52.6
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 1.4e-42 177.2 209 53.1
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 3.1e-42 176.0 200 51.0
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 1.5e-41 173.7 220 50.9
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.3e-40 170.6 213 49.8
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 2.2e-40 169.9 214 50.5
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 2.2e-40 169.9 211 51.2
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 1.9e-39 166.8 198 52.0
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 4.2e-39 165.6 193 53.9
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 1.2e-38 164.1 198 52.5
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 1.2e-38 164.1 200 50.0
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 6.1e-38 161.8 204 49.0
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 7.9e-38 161.4 195 53.3
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 1.0e-37 161.0 218 46.8
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 1.4e-37 160.6 200 52.0
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 1.4e-37 160.6 203 47.8
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 3.9e-37 159.1 173 56.6
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 5.2e-37 158.7 198 49.0
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 1.5e-36 157.1 209 46.9
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 2.0e-36 156.8 204 48.0
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 2.0e-36 156.8 204 46.1
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 2.0e-36 156.8 230 42.6
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 2.6e-36 156.4 216 46.3
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 7.4e-36 154.8 198 49.0
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 1.3e-35 154.1 211 46.9
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 2.2e-35 153.3 169 55.6
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 2.2e-35 153.3 201 48.8
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 2.8e-35 152.9 209 45.0
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 2.8e-35 152.9 202 48.5
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 8.2e-35 151.4 200 46.0
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 1.1e-34 151.0 218 46.3
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 1.2e-33 147.5 212 46.2
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 4.5e-33 145.6 215 44.2
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 4.5e-33 145.6 213 43.7
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 4.5e-33 145.6 200 44.5
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 5.9e-33 145.2 214 46.7
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 7.7e-33 144.8 199 49.7
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 1.0e-32 144.4 201 46.3
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 1.3e-32 144.1 215 46.5
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 1.3e-32 144.1 215 46.5
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 1.3e-32 144.1 217 47.0
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 1.3e-32 144.1 202 48.0
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 2.2e-32 143.3 216 45.4
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 2.2e-32 143.3 213 43.7
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 2.2e-32 143.3 213 43.7
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 2.9e-32 142.9 205 43.9
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 3.8e-32 142.5 213 47.4
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 5.0e-32 142.1 198 44.9
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 5.0e-32 142.1 194 47.9
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 1.1e-31 141.0 202 45.5
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 1.1e-31 141.0 203 47.3
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 1.1e-31 141.0 198 47.5
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 1.5e-31 140.6 209 44.5
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 1.5e-31 140.6 174 51.1
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 2.5e-31 139.8 208 47.6
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 2.5e-31 139.8 211 45.0
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 2.5e-31 139.8 210 45.2
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.5e-31 139.8 203 47.3
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 3.2e-31 139.4 202 45.5
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 3.2e-31 139.4 215 45.6
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 3.2e-31 139.4 196 47.4
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 5.5e-31 138.7 215 45.1
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 5.5e-31 138.7 195 43.1
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 7.2e-31 138.3 208 45.7
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 9.4e-31 137.9 210 43.3
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 9.4e-31 137.9 213 44.6
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.2e-30 137.5 201 46.8
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 2.1e-30 136.7 212 42.9
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 2.1e-30 136.7 217 45.6
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.1e-30 136.7 205 46.3
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 2.7e-30 136.3 211 44.5
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 3.6e-30 136.0 209 42.1
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 3.6e-30 136.0 226 43.4
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 6.1e-30 135.2 212 42.9
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 8.0e-30 134.8 196 45.4
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 1.4e-29 134.0 212 43.4
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 3.0e-29 132.9 218 41.3
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 5.2e-29 132.1 250 39.2
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 1.5e-28 130.6 205 42.0
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 2.0e-28 130.2 190 44.7
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 2.6e-28 129.8 260 36.9
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 2.6e-28 129.8 211 41.7
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 1.3e-27 127.5 217 41.5
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 8.2e-27 124.8 216 38.4
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 1.1e-26 124.4 196 41.8
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 4.5e-25 119.0 304 36.8
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 1.9e-23 113.6 214 39.7
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 4.1e-18 95.9 132 50.0
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 4.5e-17 92.4 183 37.2
SGA_v2.0_scaffold54G19641 Striga asiatica HOM05D005561 ORTHO05D006834 8.5e-16 88.2 84 63.1
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 2.1e-14 83.6 154 39.0
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 6.1e-14 82.0 221 33.5
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 4.0e-13 79.3 110 45.5
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 3.4e-12 76.3 76 51.3
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 4.4e-12 75.9 81 53.1
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 3.7e-11 72.8 234 30.8
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 1.2e-09 67.8 115 39.1
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 1.5e-07 60.8 177 31.1
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 1.9e-07 60.5 75 45.3
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 4.3e-07 59.3 44 68.2


User provided reference genes

Program Settings