Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001312 Solanum tuberosum HOM05D007272 ORTHO05D009305 3.7e-168 594.7 289 100.0
Sopen02g032460 Solanum pennellii HOM05D007272 ORTHO05D009305 6.8e-154 547.4 289 92.7
Solyc02g087730.3 Solanum lycopersicum HOM05D007272 ORTHO05D009305 1.3e-152 543.1 289 92.0
Nitab4.5_0009739g0030 Nicotiana tabacum HOM05D007272 ORTHO05D009305 2.4e-130 469.2 287 79.8
Peaxi162Scf00129g00431 Petunia axillaris HOM05D007272 ORTHO05D009305 1.4e-119 433.3 302 71.5
Nitab4.5_0000564g0300 Nicotiana tabacum HOM05D007272 ORTHO05D009305 8.2e-99 364.4 254 72.0
QL02p080768 Quercus lobata HOM05D007272 ORTHO05D009305 9.7e-92 340.9 287 58.9
Actinidia23567 Actinidia chinensis HOM05D007272 ORTHO05D009305 2.2e-91 339.7 288 60.1
TAR629G0691 Trochodendron aralioides HOM05D007272 ORTHO05D009305 1.4e-90 337.0 285 61.1
Potri.017G079100 Populus trichocarpa HOM05D007272 ORTHO05D009305 1.8e-90 336.7 287 59.2
Manes.17G022200 Manihot esculenta HOM05D007272 ORTHO05D009305 5.0e-88 328.6 286 56.6
Sabra17G0070200 Salix brachista HOM05D007272 ORTHO05D009305 5.0e-88 328.6 284 57.7
Haze_14576 Corylus avellana HOM05D007272 ORTHO05D009305 3.2e-87 325.9 287 57.8
vmacro05725 Vaccinium macrocarpon HOM05D007272 ORTHO05D009305 3.6e-86 322.4 288 57.6
Cc07_g03090 Coffea canephora HOM05D007272 ORTHO05D009305 8.8e-85 317.8 287 56.4
Lalb_Chr21g0318941 Lupinus albus HOM05D007272 ORTHO05D009305 2.0e-84 316.6 278 60.1
Thecc.04G075900 Theobroma cacao HOM05D007272 ORTHO05D009305 2.0e-84 316.6 288 56.9
Oeu037173.1 Olea europaea HOM05D007272 ORTHO05D009305 4.3e-84 315.5 290 55.2
Ciclev10011541m.g Citrus clementina HOM05D007272 ORTHO05D009305 1.3e-83 313.9 287 56.4
CiPaw.04G019400 Carya illinoinensis HOM05D007272 ORTHO05D009305 1.7e-83 313.5 287 54.7
Hma1.2p1_0449F.1_g155160 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 1.7e-83 313.5 288 56.6
Cfa007518 Carpinus fangiana HOM05D007272 ORTHO05D009305 2.8e-83 312.8 288 55.2
Duzib187G0958 Durio zibethinus HOM05D007272 ORTHO05D009305 4.8e-83 312.0 289 55.7
Ca_04270_v3 Cicer arietinum L. HOM05D007272 ORTHO05D009305 8.2e-83 311.2 291 55.3
Glyma.13G064500 Glycine max HOM05D007272 ORTHO05D009305 1.8e-82 310.1 291 57.7
TWI34G0655 Tripterygium wilfordii HOM05D007272 ORTHO05D009305 2.4e-82 309.7 289 55.7
Prupe.3G271100 Prunus persica HOM05D007272 ORTHO05D009305 3.1e-82 309.3 289 54.3
GSVIVG01011351001 Vitis vinifera HOM05D007272 ORTHO05D009305 4.1e-82 308.9 288 56.6
arahy.Tifrunner.gnm1.ann1.UFNR33 Arachis hypogaea HOM05D007272 ORTHO05D009305 2.0e-81 306.6 278 56.1
COL.COLO4_25162 Corchorus olitorius HOM05D007118 ORTHO05D008957 2.6e-81 306.2 280 56.8
Atru.chr8.1898 Acer truncatum HOM05D007272 ORTHO05D009305 4.5e-81 305.4 287 55.7
QL02p080779 Quercus lobata HOM05D007272 ORTHO05D009305 5.9e-81 305.1 328 49.4
MSTRG.3220 Avicennia marina HOM05D007272 ORTHO05D009305 1.0e-80 304.3 293 54.9
MD17G1048000 Malus domestica HOM05D007272 ORTHO05D009305 1.3e-80 303.9 289 54.0
Phvul.004G026700 Phaseolus vulgaris HOM05D007272 ORTHO05D009305 1.7e-80 303.5 287 55.4
RhsimUnG0056400 Rhododendron simsii HOM05D007272 ORTHO05D009305 1.7e-80 303.5 289 57.4
RhsimUnG0199700 Rhododendron simsii HOM05D007272 ORTHO05D009305 1.7e-80 303.5 289 57.1
TPR.G4317 Trifolium pratense HOM05D007272 ORTHO05D009305 1.7e-80 303.5 289 54.7
Glyma.19G020400 Glycine max HOM05D007272 ORTHO05D009305 2.2e-80 303.1 292 57.5
Nn3g17142 Nelumbo nucifera HOM05D007272 ORTHO05D009305 2.9e-80 302.8 285 53.3
Psat1g075440 Pisum sativum HOM05D007272 ORTHO05D009305 3.8e-80 302.4 282 56.7
Gorai.006G025400 Gossypium raimondii HOM05D007272 ORTHO05D009305 8.5e-80 301.2 292 55.1
Lj7C400T1 Lonicera japonica HOM05D007272 ORTHO05D009305 1.4e-79 300.4 287 56.1
arahy.Tifrunner.gnm1.ann1.091QIK Arachis hypogaea HOM05D007272 ORTHO05D009305 1.9e-79 300.1 296 53.0
Gohir.A09G022200 Gossypium hirsutum HOM05D007272 ORTHO05D009305 9.4e-79 297.7 292 54.5
Sc10g0003770 Simmondsia chinensis HOM05D007272 ORTHO05D009305 2.1e-78 296.6 289 51.6
Gohir.D09G021400 Gossypium hirsutum HOM05D007272 ORTHO05D009305 2.7e-78 296.2 292 54.5
PGR142G3376 Punica granatum HOM05D007272 ORTHO05D009305 2.3e-77 293.1 280 54.3
DCAR_021668 Daucus carota HOM05D007272 ORTHO05D009305 5.1e-77 292.0 288 52.1
Migut.H00895 Erythranthe guttata HOM05D007272 ORTHO05D009305 1.5e-76 290.4 292 54.5
Ah.10g031300 Amaranthus hybridus HOM05D007272 ORTHO05D009305 3.3e-76 289.3 290 50.0
ECA238G2465 Erigeron canadensis HOM05D007272 ORTHO05D009305 4.8e-75 285.4 289 49.5
Cpa.g.sc14.36 Carica papaya HOM05D007272 ORTHO05D009305 1.1e-74 284.3 244 58.6
HanXRQChr14g0449311 Helianthus annuus HOM05D007272 ORTHO05D009305 1.8e-74 283.5 289 49.1
Lsat_1_v5_gn_2_88701 Lactuca sativa HOM05D007272 ORTHO05D009305 2.4e-74 283.1 285 51.2
Lj2g0023599 Lotus japonicus HOM05D007272 ORTHO05D009305 2.4e-74 283.1 278 54.0
AUR62031636 Chenopodium quinoa HOM05D007272 ORTHO05D009305 5.3e-74 282.0 287 48.4
THA.LOC104822369 Tarenaya hassleriana HOM05D007272 ORTHO05D009305 7.0e-74 281.6 292 50.3
SalBow1G7111 Salvia bowleyana HOM05D007272 ORTHO05D009305 1.2e-73 280.8 298 50.7
Hund13235 Selenicereus undatus HOM05D007272 ORTHO05D009305 1.0e-72 277.7 276 52.5
VMungo0464G0783 Vigna mungo HOM05D007272 ORTHO05D009305 1.3e-72 277.3 317 49.8
Lj2g0009951 Lotus japonicus HOM05D007272 ORTHO05D009305 1.9e-71 273.5 265 55.8
ClCG10G014870 Citrullus lanatus HOM05D007272 ORTHO05D009305 5.5e-71 271.9 289 51.2
FAN05G2713 Fragaria x ananassa HOM05D007272 ORTHO05D009305 6.1e-70 268.5 293 51.2
FvH4_6g49170 Fragaria vesca HOM05D007272 ORTHO05D009305 1.0e-69 267.7 293 51.5
FAN02G2692 Fragaria x ananassa HOM05D001960 ORTHO05D004348 2.3e-69 266.5 293 50.9
FAN14G5197 Fragaria x ananassa HOM05D007272 ORTHO05D009305 3.9e-69 265.8 293 51.2
SGA_v2.0_scaffold135G34775 Striga asiatica HOM05D007118 ORTHO05D008957 1.5e-68 263.8 295 50.8
MD17G1048100 Malus domestica HOM05D007272 ORTHO05D009305 3.3e-68 262.7 281 50.9
CANSAT64G0717 Cannabis sativa HOM05D007272 ORTHO05D009305 4.4e-68 262.3 270 51.1
PSO591G0492 Papaver somniferum HOM05D007272 ORTHO05D009305 2.2e-67 260.0 279 48.4
PSO832G2300 Papaver somniferum HOM05D007272 ORTHO05D009305 4.8e-67 258.8 278 48.2
EL10Ac2g02942 Beta vulgaris HOM05D007272 ORTHO05D009305 1.4e-66 257.3 287 47.4
RcHm_v2.0_Chr2g0169041 Rosa chinensis HOM05D007272 ORTHO05D009305 7.0e-66 255.0 294 49.7
HPP92_000629 Vanilla planifolia HOM05D007272 ORTHO05D009305 8.5e-64 248.1 287 45.3
Medtr6g011500 Medicago truncatula HOM05D007272 ORTHO05D009305 6.1e-62 241.9 288 47.2
CSS0013465 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 3.1e-58 229.6 219 55.3
ATR0706G038 Amborella trichopoda HOM05D007272 ORTHO05D009305 2.0e-57 226.9 296 43.9
Gorai.012G056400 Gossypium raimondii HOM05D007272 ORTHO05D009305 2.7e-57 226.5 265 48.3
Gohir.D04G050866 Gossypium hirsutum HOM05D007272 ORTHO05D009305 4.5e-57 225.7 265 48.3
Os01g0185400 Oryza sativa ssp. japonica HOM05D007272 ORTHO05D009305 2.2e-56 223.4 291 44.0
Zm00001eb121640 Zea mays HOM05D007272 ORTHO05D009305 3.8e-56 222.6 290 45.9
FAN09G2990 Fragaria x ananassa HOM05D007272 ORTHO05D009305 6.5e-56 221.9 200 58.5
Gohir.A05G363800 Gossypium hirsutum HOM05D007272 ORTHO05D009305 3.4e-52 209.5 251 47.8
Aqoxy3G03290 Aquilegia oxysepala HOM05D007272 ORTHO05D009305 4.4e-52 209.1 202 52.5
Dinv33728 Davidia involucrata HOM05D007272 ORTHO05D009305 6.3e-51 205.3 152 67.8
MD09G1047900 Malus domestica HOM05D007272 ORTHO05D009305 2.1e-46 190.3 263 43.0
CDE04G0606 Ceratophyllum demersum HOM05D007272 ORTHO05D009305 2.9e-40 169.9 188 49.5
Pp3c15_23310 Physcomitrium patens HOM05D007272 ORTHO05D009305 1.0e-37 161.4 288 36.5
Mapoly0135s0023 Marchantia polymorpha HOM05D007272 ORTHO05D009305 2.0e-33 147.1 292 36.3
SMO356G0594 Selaginella moellendorffii HOM05D007272 ORTHO05D009305 8.0e-30 135.2 220 35.5
Zm00001eb204740 Zea mays HOM05D007272 ORTHO05D009305 1.6e-22 110.9 137 48.2
CSS0034889 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 2.8e-22 110.2 74 73.0
Duzib147G0842 Durio zibethinus HOM05D007272 ORTHO05D009305 4.7e-22 109.4 160 43.1
Hma1.2p1_0449F.1_g155150 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 1.2e-14 84.7 171 34.5
Hma1.2p1_2982F.1_g331245 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 1.2e-14 84.7 171 34.5
ATR0693G009 Amborella trichopoda HOM05D007272 ORTHO05D009305 3.6e-14 83.2 99 46.5
Hma1.2p1_2982F.1_g331250 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 2.4e-13 80.5 65 58.5
SGA_v2.0_scaffold52G19082 Striga asiatica HOM05D007272 ORTHO05D009305 2.9e-11 73.6 158 34.2
SGA_v2.0_scaffold52G19148 Striga asiatica HOM05D007272 ORTHO05D009305 5.4e-10 69.3 109 39.4
Medtr8g044020 Medicago truncatula HOM05D007272 ORTHO05D009305 7.1e-10 68.9 61 54.1
Dinv33460 Davidia involucrata HOM05D007272 ORTHO05D010159 1.2e-09 68.2 51 54.9
SGA_v2.0_scaffold52G19157 Striga asiatica HOM05D016586 ORTHO05D009305 2.7e-09 67.0 109 34.9
HanXRQChr07g0191831 Helianthus annuus HOM05D007272 ORTHO05D009305 1.3e-08 64.7 53 56.6
FAN19G2836 Fragaria x ananassa HOM05D007272 ORTHO05D045475 2.5e-07 60.5 38 68.4


User provided reference genes

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