Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 1.0e-297 1026.2 588 100.0
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 4.7e-279 964.1 588 90.1
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 2.6e-277 958.4 588 89.5
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.9e-228 795.4 640 73.1
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 5.5e-227 791.2 618 71.4
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 8.0e-186 654.4 720 58.3
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 7.3e-171 604.7 443 70.9
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 3.2e-166 589.3 531 69.5
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 1.0e-100 371.7 583 40.0
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 4.5e-96 356.3 590 38.8
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 1.1e-94 351.7 652 35.7
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.4e-92 344.7 583 37.9
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 8.8e-92 342.0 585 37.4
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.1e-89 335.1 587 37.5
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 2.9e-87 327.0 584 37.5
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 2.5e-86 323.9 585 37.6
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 2.1e-85 320.9 521 38.6
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 1.2e-80 305.1 587 35.6
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 5.9e-80 302.8 589 36.2
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 1.7e-71 274.6 517 35.8
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 8.6e-71 272.3 595 34.1
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 2.5e-70 270.8 592 33.6
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 3.3e-70 270.4 590 34.2
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 9.5e-70 268.9 582 33.2
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 9.5e-70 268.9 612 34.2
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 1.5e-67 261.5 589 36.3
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 1.3e-66 258.5 589 34.6
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 2.0e-64 251.1 592 37.8
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 1.7e-63 248.1 514 33.1
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 1.7e-63 248.1 650 36.0
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 6.6e-63 246.1 684 28.4
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 1.6e-61 241.5 427 35.1
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 5.2e-60 236.5 593 30.5
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 2.0e-59 234.6 432 35.9
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 2.6e-59 234.2 525 31.2
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 3.4e-59 233.8 668 32.9
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 5.8e-59 233.0 592 31.4
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 1.3e-58 231.9 429 35.7
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 2.4e-57 227.6 427 35.8
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 2.4e-57 227.6 431 34.8
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 4.1e-57 226.9 589 31.4
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.2e-56 225.3 443 35.0
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 1.6e-56 224.9 612 34.3
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 4.6e-56 223.4 429 34.5
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 5.1e-55 219.9 586 28.3
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 1.1e-54 218.8 598 30.9
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 1.5e-54 218.4 582 30.2
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 3.3e-54 217.2 638 29.5
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 4.3e-54 216.9 650 31.7
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 3.6e-53 213.8 426 39.7
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 6.2e-53 213.0 468 33.5
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 6.2e-53 213.0 432 34.3
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 1.1e-52 212.2 727 27.4
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 3.1e-52 210.7 587 31.0
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 1.5e-51 208.4 718 27.3
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.4e-51 207.2 663 30.9
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 3.4e-51 207.2 583 29.8
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 4.4e-51 206.8 267 45.7
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 4.4e-51 206.8 650 32.0
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 4.4e-51 206.8 665 31.9
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 5.8e-51 206.5 267 46.1
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 9.9e-51 205.7 651 31.2
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 3.7e-50 203.8 651 31.2
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 1.4e-49 201.8 425 35.5
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 3.2e-49 200.7 758 26.3
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 7.1e-49 199.5 426 31.2
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 1.2e-48 198.7 241 44.8
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 2.3e-47 194.5 409 35.7
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 3.0e-47 194.1 640 28.6
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 6.6e-47 193.0 624 30.1
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 1.5e-46 191.8 609 27.9
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 1.9e-46 191.4 428 33.9
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 9.9e-43 179.1 267 39.7
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 2.9e-42 177.6 432 33.6
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 9.3e-41 172.6 242 40.1
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 2.1e-40 171.4 429 34.0
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 2.7e-40 171.0 586 28.5
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 4.6e-40 170.2 421 30.4
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 7.8e-40 169.5 446 30.5
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 1.3e-39 168.7 268 40.3
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 1.3e-39 168.7 258 40.7
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 8.7e-39 166.0 585 28.9
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 4.3e-38 163.7 702 25.9
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 8.1e-37 159.5 411 30.9
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 8.1e-37 159.5 333 40.5
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 5.3e-36 156.8 688 26.0
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 4.4e-35 153.7 688 25.9
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 4.9e-34 150.2 274 34.3
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 8.4e-34 149.4 387 30.0
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 6.0e-32 143.3 704 25.4
Nitab4.5_0004549g0040 Nicotiana tabacum HOM05D005385 ORTHO05D006768 6.0e-32 143.3 103 76.7
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 1.0e-31 142.5 226 36.3
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 1.7e-31 141.7 695 26.2
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 2.3e-31 141.4 401 29.4
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 3.0e-31 141.0 704 25.3
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 7.4e-30 136.3 225 36.0
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 7.4e-30 136.3 709 26.5
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.3e-29 135.6 374 30.2
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 2.1e-29 134.8 362 33.1
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 3.6e-29 134.0 154 44.8
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 4.8e-29 133.7 520 29.0
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 8.1e-29 132.9 477 29.8
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.8e-28 131.7 262 36.3
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 5.3e-28 130.2 701 25.4
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 1.2e-27 129.0 678 23.7
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.2e-27 129.0 152 45.4
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 3.4e-27 127.5 251 35.5
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.3e-26 125.6 722 24.5
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 1.1e-25 122.5 714 24.2
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 1.1e-25 122.5 112 50.0
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 2.4e-25 121.3 145 43.4
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 1.2e-24 119.0 710 24.4
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 2.7e-24 117.9 712 24.0
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 6.0e-24 116.7 726 23.4
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 3.0e-23 114.4 716 22.6
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.6e-21 108.6 267 30.3
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 2.9e-18 97.8 267 27.0
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 1.9e-17 95.1 330 27.3
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 3.5e-16 90.9 389 27.2
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 6.0e-16 90.1 283 27.6
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.3e-15 89.0 431 23.2
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.3e-15 89.0 431 23.2
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 2.3e-15 88.2 109 45.9
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 1.7e-10 72.0 108 38.0
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 5.0e-10 70.5 327 26.3
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 5.0e-10 70.5 127 37.8
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.9e-09 68.6 326 25.2
Lj1A781G48 Lonicera japonica HOM05D005385 ORTHO05D006768 2.3e-07 61.6 84 38.1
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 2.3e-07 61.6 95 36.8
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 5.7e-06 57.0 202 27.2


User provided reference genes

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