Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400000968 Solanum tuberosum HOM05D005712 ORTHO05D007865 6.5e-188 660.6 340 100.0
Sopen08g012540 Solanum pennellii HOM05D005712 ORTHO05D007865 1.9e-179 632.5 340 95.3
Solyc08g042080.3 Solanum lycopersicum HOM05D005712 ORTHO05D007865 2.6e-176 622.1 340 93.8
CAN.G36.16 Capsicum annuum HOM05D005712 ORTHO05D007865 1.3e-156 556.6 340 85.9
Nitab4.5_0004637g0020 Nicotiana tabacum HOM05D005712 ORTHO05D007865 1.5e-152 543.1 360 80.6
Nitab4.5_0000486g0150 Nicotiana tabacum HOM05D005712 ORTHO05D007865 1.2e-149 533.5 360 79.7
Peaxi162Scf00632g00416 Petunia axillaris HOM05D005712 ORTHO05D007865 2.2e-119 433.0 275 82.9
Dinv31977 Davidia involucrata HOM05D005712 ORTHO05D007865 2.3e-116 422.9 352 64.8
Actinidia17068 Actinidia chinensis HOM05D005712 ORTHO05D007865 1.0e-108 397.5 354 61.0
CSS0017080 Camellia sinensis var. sinensis HOM05D005712 ORTHO05D007865 1.5e-107 393.7 358 60.1
Actinidia15518 Actinidia chinensis HOM05D005712 ORTHO05D007865 3.6e-106 389.0 358 59.2
COL.COLO4_07687 Corchorus olitorius HOM05D005712 ORTHO05D007865 2.9e-103 379.4 317 63.1
GSVIVG01013413001 Vitis vinifera HOM05D005712 ORTHO05D007865 3.8e-103 379.0 253 75.9
Ciclev10001686m.g Citrus clementina HOM05D005712 ORTHO05D007865 4.2e-102 375.6 355 58.6
TAR625G0170 Trochodendron aralioides HOM05D005712 ORTHO05D007865 4.2e-102 375.6 318 61.0
Lj4C5T14 Lonicera japonica HOM05D005712 ORTHO05D007865 3.5e-101 372.5 300 64.3
Duzib116G0237 Durio zibethinus HOM05D005712 ORTHO05D007865 1.0e-100 370.9 351 57.0
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 5.1e-100 368.6 351 57.3
Gohir.A05G177700 Gossypium hirsutum HOM05D005712 ORTHO05D007865 1.5e-99 367.1 301 62.5
Manes.05G126100 Manihot esculenta HOM05D005712 ORTHO05D007865 1.5e-99 367.1 357 56.0
MSTRG.22087 Avicennia marina HOM05D005712 ORTHO05D007865 2.5e-99 366.3 312 63.5
Atru.chr13.78 Acer truncatum HOM05D005712 ORTHO05D007865 3.3e-99 365.9 268 70.1
Gorai.009G186100 Gossypium raimondii HOM05D005712 ORTHO05D007865 4.3e-99 365.5 301 62.5
Gohir.D05G181100 Gossypium hirsutum HOM05D005712 ORTHO05D007865 5.6e-99 365.2 301 62.5
Hma1.2p1_0699F.1_g205630 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 1.3e-98 364.0 274 68.2
Thecc.08G064200 Theobroma cacao HOM05D005712 ORTHO05D007865 1.3e-98 364.0 321 60.1
Sabra05G0197900 Salix brachista HOM05D005712 ORTHO05D007865 1.6e-98 363.6 270 67.4
Oeu004544.1 Olea europaea HOM05D005712 ORTHO05D007865 2.1e-98 363.2 378 55.8
QL02p015343 Quercus lobata HOM05D005712 ORTHO05D007865 2.8e-98 362.8 349 57.3
TAR381G1666 Trochodendron aralioides HOM05D005712 ORTHO05D007865 2.8e-98 362.8 250 70.0
Cfa014126 Carpinus fangiana HOM05D005712 ORTHO05D007865 1.8e-97 360.1 361 56.2
CiPaw.07G134700 Carya illinoinensis HOM05D005712 ORTHO05D007865 2.4e-97 359.8 283 64.7
Cc10_g00320 Coffea canephora HOM05D005712 ORTHO05D007865 2.4e-97 359.8 301 63.1
Cpa.g.sc26.149 Carica papaya HOM05D005712 ORTHO05D007865 3.1e-97 359.4 271 66.4
SalBow6G6969 Salvia bowleyana HOM05D005712 ORTHO05D007865 3.1e-97 359.4 359 57.1
Potri.002G006300 Populus trichocarpa HOM05D005712 ORTHO05D007865 5.3e-97 358.6 269 67.7
Potri.005G255300 Populus trichocarpa HOM05D005712 ORTHO05D007865 4.5e-96 355.5 270 67.0
Sed0012463 Sechium edule HOM05D005712 ORTHO05D007865 4.5e-96 355.5 299 61.2
Migut.N02981 Erythranthe guttata HOM05D005712 ORTHO05D007865 5.8e-96 355.1 293 64.5
CsaV3_4G037540 Cucumis sativus L. HOM05D005712 ORTHO05D007865 9.9e-96 354.4 267 66.7
AUR62024105 Chenopodium quinoa HOM05D005712 ORTHO05D007865 3.8e-95 352.4 243 70.4
MELO3C017048.2 Cucumis melo HOM05D005712 ORTHO05D007865 1.1e-94 350.9 299 60.9
Lsat_1_v5_gn_2_2221 Lactuca sativa HOM05D005712 ORTHO05D007865 1.1e-94 350.9 318 57.2
TWI56G0384 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 1.1e-94 350.9 306 61.1
TWI12G0719 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 1.4e-94 350.5 265 66.4
vmacro21777 Vaccinium macrocarpon HOM05D005712 ORTHO05D007865 4.2e-94 349.0 258 67.4
Ah.00g001120 Amaranthus hybridus HOM05D005712 ORTHO05D007865 7.1e-94 348.2 265 65.3
Nn5g31025 Nelumbo nucifera HOM05D005712 ORTHO05D007865 9.3e-94 347.8 347 55.3
SGA_v2.0_scaffold54G19632 Striga asiatica HOM05D005712 ORTHO05D007865 9.3e-94 347.8 285 62.8
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 2.1e-93 346.7 258 68.2
Hund05083 Selenicereus undatus HOM05D005712 ORTHO05D007865 2.3e-92 343.2 294 61.2
Haze_22847 Corylus avellana HOM05D005712 ORTHO05D007865 3.0e-92 342.8 405 50.4
HanXRQChr06g0185301 Helianthus annuus HOM05D005712 ORTHO05D007865 2.5e-91 339.7 339 56.3
Aqoxy6G01560 Aquilegia oxysepala HOM05D005712 ORTHO05D007865 4.3e-91 339.0 275 62.9
ClCG11G018940 Citrullus lanatus HOM05D005712 ORTHO05D007865 4.3e-91 339.0 347 53.6
ECA238G0561 Erigeron canadensis HOM05D005712 ORTHO05D007865 3.1e-89 332.8 279 60.9
MBI05_g08201_MAGBIO Magnolia biondii HOM05D005712 ORTHO05D007865 5.3e-89 332.0 288 59.7
EL10Ac1g01884 Beta vulgaris HOM05D005712 ORTHO05D007865 9.0e-89 331.3 263 64.6
Glyma.06G015100 Glycine max HOM05D005712 ORTHO05D007865 2.6e-88 329.7 310 57.7
arahy.Tifrunner.gnm1.ann1.CTTM8W Arachis hypogaea HOM05D005712 ORTHO05D007865 2.2e-87 326.6 336 53.9
DCAR_022990 Daucus carota HOM05D000190 ORTHO05D007865 3.8e-87 325.9 259 64.5
CDE04G2669 Ceratophyllum demersum HOM05D005712 ORTHO05D007865 2.5e-86 323.2 266 62.0
Eucgr.F03584 Eucalyptus grandis HOM05D005712 ORTHO05D007865 1.6e-85 320.5 300 57.7
VMungo1309G2122 Vigna mungo HOM05D005712 ORTHO05D007865 2.1e-85 320.1 295 59.0
CANSAT35G0891 Cannabis sativa HOM05D005712 ORTHO05D007865 2.7e-85 319.7 245 67.8
Ca_15390_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 3.5e-85 319.3 340 53.8
Aa31LG7G4990 Aethionema arabicum HOM05D005712 ORTHO05D007865 4.6e-85 318.9 287 58.2
Lj1g0001697 Lotus japonicus HOM05D005712 ORTHO05D007865 4.6e-85 318.9 338 54.1
Glyma.04G015100 Glycine max HOM05D005712 ORTHO05D007865 7.9e-85 318.2 311 55.9
AT1G20830 Arabidopsis thaliana HOM05D005712 ORTHO05D007865 1.0e-84 317.8 280 58.2
Phvul.009G007500 Phaseolus vulgaris HOM05D005712 ORTHO05D007865 1.0e-84 317.8 310 56.5
Lalb_Chr23g0265571 Lupinus albus HOM05D005712 ORTHO05D007865 1.3e-84 317.4 246 65.0
PSO541G4707 Papaver somniferum HOM05D005712 ORTHO05D007865 1.3e-84 317.4 268 60.1
MD06G1005200 Malus domestica HOM05D005712 ORTHO05D007865 1.8e-84 317.0 270 62.6
THA.LOC104813742 Tarenaya hassleriana HOM05D005712 ORTHO05D007865 8.7e-84 314.7 284 57.0
Carub.0001s2029 Capsella rubella HOM05D005712 ORTHO05D007865 1.5e-83 313.9 280 58.2
Thhalv10007995m.g Eutrema salsugineum HOM05D005712 ORTHO05D007865 2.5e-83 313.2 242 65.3
PSO675G3648 Papaver somniferum HOM05D005712 ORTHO05D007865 3.3e-83 312.8 268 59.3
AUR62035160 Chenopodium quinoa HOM05D005712 ORTHO05D007865 4.3e-83 312.4 245 63.7
Medtr3g116050 Medicago truncatula HOM05D005712 ORTHO05D007865 9.6e-83 311.2 342 51.8
BcaC05g25986 Brassica carinata HOM05D005712 ORTHO05D007865 2.8e-82 309.7 242 64.0
C05p19380 Brassica napus HOM05D005712 ORTHO05D007865 2.8e-82 309.7 242 64.0
Sp1g18530 Schrenkiella parvula HOM05D005712 ORTHO05D007865 2.8e-82 309.7 242 65.3
BcaB03g12849 Brassica carinata HOM05D005712 ORTHO05D007865 3.7e-82 309.3 254 61.4
BcaB07g32078 Brassica carinata HOM05D005712 ORTHO05D007865 8.2e-82 308.1 240 65.4
A06p16820 Brassica napus HOM05D005712 ORTHO05D007865 1.1e-81 307.8 231 66.7
BraA06t24791Z Brassica rapa HOM05D005712 ORTHO05D007865 1.1e-81 307.8 231 66.7
Ca_29628_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 1.1e-81 307.8 218 71.6
FAN18G0352 Fragaria x ananassa HOM05D005712 ORTHO05D007865 4.1e-81 305.8 253 61.7
BolC5t30641H Brassica oleracea HOM05D005712 ORTHO05D007865 5.3e-81 305.4 243 63.8
CARHR021260 Cardamine hirsuta HOM05D005712 ORTHO05D007865 9.0e-81 304.7 325 52.0
RcHm_v2.0_Chr7g0216471 Rosa chinensis HOM05D005712 ORTHO05D007865 9.0e-81 304.7 302 55.6
Prupe.5G006400 Prunus persica HOM05D005712 ORTHO05D007865 2.0e-80 303.5 244 64.3
FAN13G2028 Fragaria x ananassa HOM05D005712 ORTHO05D007865 2.6e-80 303.1 253 61.3
AL1G33850 Arabidopsis lyrata HOM05D005712 ORTHO05D007865 7.6e-80 301.6 234 65.0
TPR.G38133 Trifolium pratense HOM05D005712 ORTHO05D007865 1.3e-79 300.8 282 57.4
arahy.Tifrunner.gnm1.ann1.16JRKN Arachis hypogaea HOM05D005712 ORTHO05D007865 3.8e-79 299.3 275 58.2
RcHm_v2.0_Chr4g0410601 Rosa chinensis HOM05D005712 ORTHO05D007865 8.4e-79 298.1 261 60.9
FAN04G3045 Fragaria x ananassa HOM05D005712 ORTHO05D007865 2.5e-78 296.6 268 59.3
Hma1.2p1_0699F.1_g205640 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 3.2e-78 296.2 188 77.1
FAN08G0897 Fragaria x ananassa HOM05D005712 ORTHO05D007865 7.1e-78 295.0 253 60.1
FvH4_5g25940 Fragaria vesca HOM05D005712 ORTHO05D007865 2.7e-77 293.1 203 69.5
ATR0807G100 Amborella trichopoda HOM05D005712 ORTHO05D007865 3.5e-77 292.7 268 57.5
unitig_22.g5745 Utricularia gibba HOM05D005712 ORTHO05D007865 4.6e-77 292.4 235 66.0
Psat5g008680 Pisum sativum HOM05D005712 ORTHO05D007865 6.5e-71 271.9 186 73.1
HPP92_022548 Vanilla planifolia HOM05D005712 ORTHO05D007865 6.7e-68 261.9 205 63.9
SEGI_27803 Sequoiadendron giganteum HOM05D005712 ORTHO05D007865 6.9e-65 251.9 226 55.3
Os04g0584900 Oryza sativa ssp. japonica HOM05D005712 ORTHO05D007865 5.9e-64 248.8 209 56.9
Cpa.g.sc26.148 Carica papaya HOM05D005712 ORTHO05D007865 5.0e-63 245.7 150 80.0
Zm00001eb428100 Zea mays HOM05D005712 ORTHO05D007865 4.7e-61 239.2 265 49.4
Zm00001eb072780 Zea mays HOM05D005712 ORTHO05D007865 1.8e-60 237.3 267 48.7
Oeu019899.1 Olea europaea HOM05D005712 ORTHO05D007865 4.7e-53 212.6 121 81.8
SMO276G0054 Selaginella moellendorffii HOM05D005712 ORTHO05D007865 1.5e-51 207.6 232 49.1
Mapoly0022s0159 Marchantia polymorpha HOM05D005712 ORTHO05D007865 1.3e-50 204.5 240 45.0
AagrBONN_evm.TU.Sc2ySwM_117.1031 Anthoceros agrestis HOM05D005712 ORTHO05D007865 1.8e-49 200.7 199 51.8
Duzib093G1432 Durio zibethinus HOM05D005712 ORTHO05D007865 4.5e-48 196.1 103 87.4
Pp3c15_5620 Physcomitrium patens HOM05D005712 ORTHO05D007865 1.0e-47 194.9 191 52.9
Pp3c9_6030 Physcomitrium patens HOM05D005712 ORTHO05D007865 2.9e-47 193.4 191 55.0
Cpa.g.c30366.3 Carica papaya HOM05D005712 ORTHO05D007865 2.5e-30 137.1 79 77.2
Cpa.g.c44851 Carica papaya HOM05D005712 ORTHO05D007865 3.3e-30 136.7 69 87.0
Oeu019902.1 Olea europaea HOM05D005712 ORTHO05D007865 3.7e-26 123.2 197 42.1
A07p15460 Brassica napus HOM05D005712 ORTHO05D007865 1.6e-13 81.3 58 65.5
BcaB03g14422 Brassica carinata HOM05D005712 ORTHO05D014368 2.1e-08 64.3 50 64.0
BolC8t49668H Brassica oleracea HOM05D005712 ORTHO05D032168 7.8e-08 62.4 135 32.6


User provided reference genes

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