Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400000797 Solanum tuberosum HOM05D006114 ORTHO05D007609 4.3e-225 784.3 378 100.0
Solyc04g071130.1 Solanum lycopersicum HOM05D006114 ORTHO05D007609 1.2e-222 776.2 378 99.2
Sopen04g027070 Solanum pennellii HOM05D006114 ORTHO05D007609 1.2e-222 776.2 378 99.2
Nitab4.5_0006608g0010 Nicotiana tabacum HOM05D006114 ORTHO05D007609 6.1e-211 737.3 388 91.2
Nitab4.5_0000032g0440 Nicotiana tabacum HOM05D006114 ORTHO05D007609 1.9e-209 732.3 378 92.6
CAN.G175.3 Capsicum annuum HOM05D006114 ORTHO05D007609 1.0e-205 719.9 383 91.4
Cc10_g14550 Coffea canephora HOM05D006114 ORTHO05D007609 5.8e-153 544.7 386 71.2
Peaxi162Scf00263g01414 Petunia axillaris HOM05D006114 ORTHO05D007609 3.3e-148 528.9 280 90.4
Dinv41097 Davidia involucrata HOM05D006114 ORTHO05D007609 8.9e-146 520.8 369 69.6
CSS0028797 Camellia sinensis var. sinensis HOM05D006114 ORTHO05D007609 3.4e-145 518.8 380 66.8
MD05G1021300 Malus domestica HOM05D006114 ORTHO05D007609 3.4e-145 518.8 373 67.3
Hma1.2p1_0616F.1_g190010 Hydrangea macrophylla HOM05D006114 ORTHO05D007609 4.1e-143 511.9 376 68.6
Lj7A371T45 Lonicera japonica HOM05D006114 ORTHO05D007609 2.3e-141 506.1 379 67.0
MD10G1022100 Malus domestica HOM05D006114 ORTHO05D007609 1.6e-139 500.0 374 64.7
SalBow7G1400 Salvia bowleyana HOM05D006114 ORTHO05D007609 4.7e-139 498.4 377 65.8
TAR381G1603 Trochodendron aralioides HOM05D006114 ORTHO05D007609 4.7e-139 498.4 379 63.6
CANSAT25G1256 Cannabis sativa HOM05D006114 ORTHO05D007609 1.1e-138 497.3 378 65.6
Actinidia15143 Actinidia chinensis HOM05D006114 ORTHO05D007609 1.4e-138 496.9 379 62.8
Prupe.8G025000 Prunus persica HOM05D006114 ORTHO05D007609 1.4e-138 496.9 371 65.8
Gohir.A05G269900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 2.0e-137 493.0 384 63.8
Lsat_1_v5_gn_1_8460 Lactuca sativa HOM05D006114 ORTHO05D007609 2.0e-137 493.0 375 66.4
Nn1g06119 Nelumbo nucifera HOM05D006114 ORTHO05D007609 2.0e-137 493.0 379 63.6
Gohir.D05G271900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 3.4e-137 492.3 384 63.8
Gorai.009G284900 Gossypium raimondii HOM05D006114 ORTHO05D007609 3.4e-137 492.3 384 63.8
MSTRG.1356 Avicennia marina HOM05D006114 ORTHO05D007609 1.7e-136 490.0 390 61.5
Oeu032982.1 Olea europaea HOM05D006114 ORTHO05D007609 1.7e-136 490.0 394 61.2
Aqoxy5G02132 Aquilegia oxysepala HOM05D006114 ORTHO05D007609 4.9e-136 488.4 381 63.8
RcHm_v2.0_Chr6g0276341 Rosa chinensis HOM05D006114 ORTHO05D007609 6.4e-136 488.0 373 64.6
Ciclev10001576m.g Citrus clementina HOM05D006114 ORTHO05D007609 7.1e-135 484.6 379 64.1
Migut.C01010 Erythranthe guttata HOM05D006114 ORTHO05D007609 1.6e-134 483.4 396 62.1
COL.COLO4_24672 Corchorus olitorius HOM05D006114 ORTHO05D007609 2.7e-134 482.6 384 63.5
Cfa018335 Carpinus fangiana HOM05D006114 ORTHO05D007609 4.6e-134 481.9 378 63.0
Sed0024386 Sechium edule HOM05D006114 ORTHO05D007609 4.6e-134 481.9 378 61.9
Ca_27292_v3 Cicer arietinum L. HOM05D006114 ORTHO05D007609 7.8e-134 481.1 381 61.4
Haze_17740 Corylus avellana HOM05D006114 ORTHO05D007609 1.3e-133 480.3 380 62.1
Lalb_Chr19g0130321 Lupinus albus HOM05D006114 ORTHO05D007609 2.3e-133 479.6 388 61.3
Potri.002G069900 Populus trichocarpa HOM05D006114 ORTHO05D007609 2.3e-133 479.6 384 62.8
AL2G37050 Arabidopsis lyrata HOM05D006114 ORTHO05D007609 3.0e-133 479.2 385 62.1
CiPaw.16G014300 Carya illinoinensis HOM05D006114 ORTHO05D007609 3.9e-133 478.8 380 63.7
TAR625G1556 Trochodendron aralioides HOM05D006114 ORTHO05D007609 1.9e-132 476.5 380 62.1
AT1G76920 Arabidopsis thaliana HOM05D006114 ORTHO05D007609 2.5e-132 476.1 385 61.6
QL02p024207 Quercus lobata HOM05D006114 ORTHO05D007609 5.6e-132 474.9 373 64.1
MSTRG.22368 Avicennia marina HOM05D006114 ORTHO05D007609 1.2e-131 473.8 388 60.6
SpUn0346_0010 Schrenkiella parvula HOM05D006114 ORTHO05D007609 1.2e-131 473.8 382 62.3
unitig_749.g13920 Utricularia gibba HOM05D006114 ORTHO05D007609 1.6e-131 473.4 392 60.2
Aa31LG4G6950 Aethionema arabicum HOM05D006114 ORTHO05D007609 2.1e-131 473.0 381 62.2
PSO675G2834 Papaver somniferum HOM05D006114 ORTHO05D007609 2.8e-131 472.6 376 59.0
Thecc.08G149100 Theobroma cacao HOM05D006114 ORTHO05D007609 2.8e-131 472.6 384 61.7
DCAR_010096 Daucus carota HOM05D006114 ORTHO05D007609 3.6e-131 472.2 378 62.7
Lj2g0010896 Lotus japonicus HOM05D006114 ORTHO05D007609 4.7e-131 471.9 381 59.3
Thhalv10019824m.g Eutrema salsugineum HOM05D006114 ORTHO05D007609 6.2e-131 471.5 380 62.1
Carub.0002s2378 Capsella rubella HOM05D006114 ORTHO05D007609 1.8e-130 469.9 386 61.4
Cpa.g.sc21.182 Carica papaya HOM05D006114 ORTHO05D007609 2.4e-130 469.5 381 64.0
PSO541G3056 Papaver somniferum HOM05D006114 ORTHO05D007609 2.4e-130 469.5 379 58.8
Atru.chr13.2189 Acer truncatum HOM05D006114 ORTHO05D007609 4.0e-130 468.8 380 61.8
BcaB05g25019 Brassica carinata HOM05D006114 ORTHO05D007609 6.9e-130 468.0 378 61.6
BraA07t30466Z Brassica rapa HOM05D006114 ORTHO05D007609 1.2e-129 467.2 378 62.4
Potri.005G190400 Populus trichocarpa HOM05D006114 ORTHO05D007609 1.5e-129 466.8 380 62.4
A07p28250 Brassica napus HOM05D006114 ORTHO05D007609 2.6e-129 466.1 378 62.2
C06p31720 Brassica napus HOM05D006114 ORTHO05D007609 4.4e-129 465.3 378 62.2
BolC6t38302H Brassica oleracea HOM05D006114 ORTHO05D007609 4.4e-129 465.3 378 62.2
Duzib041G0274 Durio zibethinus HOM05D006114 ORTHO05D007609 5.8e-129 464.9 384 61.2
Eucgr.F02716 Eucalyptus grandis HOM05D006114 ORTHO05D007609 9.9e-129 464.2 392 59.7
THA.LOC104812044 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 1.3e-128 463.8 387 59.9
FAN15G0766 Fragaria x ananassa HOM05D006114 ORTHO05D007609 2.2e-128 463.0 374 62.8
TWI32G1226 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 2.2e-128 463.0 380 62.1
THA.LOC104813707 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 2.9e-128 462.6 382 59.2
BcaB02g07084 Brassica carinata HOM05D006114 ORTHO05D007609 3.8e-128 462.2 379 61.2
TWI34G0188 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 4.9e-128 461.8 381 60.6
BcaC08g45501 Brassica carinata HOM05D006114 ORTHO05D007609 1.4e-127 460.3 378 61.6
Duzib116G0820 Durio zibethinus HOM05D006114 ORTHO05D007609 1.4e-127 460.3 388 60.3
Manes.02G177800 Manihot esculenta HOM05D006114 ORTHO05D007609 1.4e-127 460.3 406 57.9
Medtr6g034935 Medicago truncatula HOM05D006114 ORTHO05D007609 1.4e-127 460.3 385 59.2
Rhsim05G0182400 Rhododendron simsii HOM05D006114 ORTHO05D007609 4.2e-127 458.8 383 62.4
Hund26709 Selenicereus undatus HOM05D006114 ORTHO05D000105 3.5e-126 455.7 393 58.3
AUR62039242 Chenopodium quinoa HOM05D006114 ORTHO05D007609 7.8e-126 454.5 392 58.2
Sabra02G0054600 Salix brachista HOM05D006114 ORTHO05D007609 2.1e-123 446.4 357 62.7
EL10Ac7g15790 Beta vulgaris HOM05D006114 ORTHO05D007609 1.2e-121 440.7 384 56.8
Ah.08g215970 Amaranthus hybridus HOM05D006114 ORTHO05D007609 4.5e-121 438.7 389 56.6
VMungo0464G2055 Vigna mungo HOM05D006114 ORTHO05D007609 4.5e-121 438.7 382 56.8
Phvul.004G097500 Phaseolus vulgaris HOM05D006114 ORTHO05D007609 9.9e-121 437.6 382 56.5
PGR042G1057 Punica granatum HOM05D006114 ORTHO05D007609 3.2e-119 432.6 387 58.7
PGR122G0006 Punica granatum HOM05D006114 ORTHO05D007609 3.2e-119 432.6 387 58.7
Glyma.02G083400 Glycine max HOM05D006114 ORTHO05D007609 2.3e-117 426.4 381 55.9
FvH4_2g14200 Fragaria vesca HOM05D006114 ORTHO05D007609 3.0e-117 426.0 300 67.7
Sed0010814 Sechium edule HOM05D006114 ORTHO05D007609 1.9e-116 423.3 376 56.4
HanXRQChr02g0039921 Helianthus annuus HOM05D006114 ORTHO05D007609 1.6e-115 420.2 339 63.7
FAN24G0263 Fragaria x ananassa HOM05D006114 ORTHO05D007609 1.1e-111 407.5 288 67.0
Lj7A371T46 Lonicera japonica HOM05D006114 ORTHO05D007609 1.1e-111 407.5 379 56.5
Medtr6g049050 Medicago truncatula HOM05D006114 ORTHO05D007609 1.2e-102 377.5 374 52.1
CARHR070420 Cardamine hirsuta HOM05D006114 ORTHO05D007609 7.9e-102 374.8 304 61.5
ECA247G0840 Erigeron canadensis HOM05D006114 ORTHO05D007609 1.3e-99 367.5 254 70.5
HPP92_009302 Vanilla planifolia HOM05D006114 ORTHO05D007609 6.3e-99 365.2 388 50.3
Migut.N03218 Erythranthe guttata HOM05D006114 ORTHO05D007609 1.1e-98 364.4 395 49.4
Zm00001eb434300 Zea mays HOM05D006114 ORTHO05D007609 3.1e-90 336.3 403 46.4
MBI17_g34067_MAGBIO Magnolia biondii HOM05D006114 ORTHO05D007609 4.1e-90 335.9 351 51.3
Zm00001eb076050 Zea mays HOM05D006114 ORTHO05D007609 1.2e-86 324.3 394 45.7
GSVIVG01034899001 Vitis vinifera HOM05D006114 ORTHO05D007609 3.6e-86 322.8 378 47.4
FAN27G1342 Fragaria x ananassa HOM05D006114 ORTHO05D007609 1.7e-80 303.9 199 71.4
Oeu046020.2 Olea europaea HOM05D006114 ORTHO05D007609 1.4e-79 300.8 390 44.1
Os04g0686700 Oryza sativa ssp. japonica HOM05D006114 ORTHO05D007609 6.1e-78 295.4 320 49.4
Psat0s3019g0080 Pisum sativum HOM05D006114 ORTHO05D007609 1.8e-77 293.9 215 65.1
unitig_26.g9904 Utricularia gibba HOM05D006114 ORTHO05D007609 2.2e-72 276.9 259 54.4
AUR62009796 Chenopodium quinoa HOM05D006114 ORTHO05D007609 6.5e-72 275.4 202 62.9
TPR.G36696 Trifolium pratense HOM05D006114 ORTHO05D007609 1.5e-60 237.7 163 66.9
SGA_v2.0_scaffold48G17978 Striga asiatica HOM05D006114 ORTHO05D007609 2.5e-55 220.3 155 66.5
SEGI_30218 Sequoiadendron giganteum HOM05D006114 ORTHO05D007609 8.8e-53 211.8 382 35.3
Zm00001eb268540 Zea mays HOM05D006114 ORTHO05D007609 5.6e-47 192.6 185 52.4
unitig_26.g9903 Utricularia gibba HOM05D006114 ORTHO05D007609 1.1e-42 178.3 110 72.7
FAN14G0378 Fragaria x ananassa HOM05D006114 ORTHO05D007609 8.3e-35 152.1 130 58.5
AUR62009795 Chenopodium quinoa HOM05D006114 ORTHO05D007609 1.0e-32 145.2 233 36.9
AUR62039241 Chenopodium quinoa HOM05D006114 ORTHO05D007609 5.0e-32 142.9 224 38.8
ATR0772G199 Amborella trichopoda HOM05D006114 ORTHO05D007609 8.6e-32 142.1 200 41.5
Zm00001eb182860 Zea mays HOM05D006114 ORTHO05D007609 2.2e-27 127.5 144 45.8
CDE08G0205 Ceratophyllum demersum HOM05D006114 ORTHO05D007609 9.2e-26 122.1 93 62.4
FvH4_3g14282 Fragaria vesca HOM05D006114 ORTHO05D007609 1.7e-24 117.9 97 58.8
Zm00001eb346130 Zea mays HOM05D003599 ORTHO05D004221 7.6e-20 102.4 95 53.7
Zm00001eb268560 Zea mays HOM05D006114 ORTHO05D007609 1.7e-19 101.3 104 49.0
Zm00001eb268570 Zea mays HOM05D006114 ORTHO05D007609 2.9e-19 100.5 79 60.8
Zm00001eb243390 Zea mays HOM05D006114 ORTHO05D007609 6.4e-19 99.4 92 53.3
Hma1.2p1_0448F.1_g154860 Hydrangea macrophylla HOM05D004302 ORTHO05D004939 2.7e-17 94.0 364 26.9
VMungo1383G2819 Vigna mungo HOM05D006114 ORTHO05D007609 4.6e-17 93.2 77 55.8
ECA238G3553 Erigeron canadensis HOM05D004302 ORTHO05D004939 6.0e-17 92.8 358 25.1
Zm00001eb080980 Zea mays HOM05D006114 ORTHO05D007609 7.8e-17 92.4 103 44.7
Zm00001eb080990 Zea mays HOM05D006114 ORTHO05D007609 2.5e-15 87.4 74 54.1
Nn3g17571 Nelumbo nucifera HOM05D004302 ORTHO05D004939 4.3e-15 86.7 356 25.3
Sabra17G0088200 Salix brachista HOM05D004302 ORTHO05D004939 3.6e-14 83.6 359 26.2
MSTRG.25314 Avicennia marina HOM05D006114 ORTHO05D007609 4.7e-14 83.2 65 60.0
Aa31LG11G13870 Aethionema arabicum HOM05D004302 ORTHO05D004939 1.4e-13 81.6 359 25.1
arahy.Tifrunner.gnm1.ann1.0BPN3L Arachis hypogaea HOM05D000034 ORTHO05D000037 2.0e-12 77.8 58 58.6
SGA_v2.0_scaffold17G07917 Striga asiatica HOM05D006114 ORTHO05D007609 3.4e-12 77.0 165 40.0
FvH4_6g34681 Fragaria vesca HOM05D006114 ORTHO05D007609 1.3e-11 75.1 66 54.5
AagrBONN_evm.TU.Sc2ySwM_228.846 Anthoceros agrestis HOM05D002809 ORTHO05D004939 2.2e-11 74.3 380 24.7
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 2.1e-09 67.8 369 23.0
TAR381G0769 Trochodendron aralioides HOM05D003005 ORTHO05D004939 2.1e-09 67.8 360 23.3
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 3.5e-09 67.0 322 26.1
Mapoly0186s0014 Marchantia polymorpha HOM05D004302 ORTHO05D004939 4.6e-09 66.6 335 25.1
SEGI_08151 Sequoiadendron giganteum HOM05D002809 ORTHO05D009091 4.6e-09 66.6 317 24.9
Nn5g28167 Nelumbo nucifera HOM05D002809 ORTHO05D004939 1.3e-08 65.1 361 23.0
FvH4_6g34680 Fragaria vesca HOM05D006114 ORTHO05D007609 8.7e-08 62.4 50 64.0
Pp3c26_600 Physcomitrium patens HOM05D003005 ORTHO05D006906 1.5e-07 61.6 199 30.2
Pp3c14_23730 Physcomitrium patens HOM05D002809 ORTHO05D004563 4.3e-07 60.1 393 21.6
SEGI_36099 Sequoiadendron giganteum HOM05D003005 ORTHO05D030467 4.3e-07 60.1 390 22.6
Mapoly0002s0187 Marchantia polymorpha HOM05D002809 ORTHO05D004563 5.6e-07 59.7 327 22.9
Pp3c22_13680 Physcomitrium patens HOM05D007753 ORTHO05D009385 7.3e-07 59.3 376 22.1
Pp3c24_8170 Physcomitrium patens HOM05D002809 ORTHO05D004939 7.3e-07 59.3 381 21.0
SMO364G0869 Selaginella moellendorffii HOM05D003005 ORTHO05D004563 1.6e-06 58.2 149 30.2
Pp3c21_15780 Physcomitrium patens HOM05D004302 ORTHO05D004939 3.6e-06 57.0 158 28.5
SalBow7G0003 Salvia bowleyana HOM05D007423 ORTHO05D009091 3.6e-06 57.0 143 30.8
MBI06_g04298_MAGBIO Magnolia biondii HOM05D003005 ORTHO05D004170 6.2e-06 56.2 400 23.0
RcHm_v2.0_Chr2g0119661 Rosa chinensis HOM05D006114 ORTHO05D007609 6.2e-06 56.2 37 62.2


User provided reference genes

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