Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 0.0e+00 1305.0 657 100.0
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 0.0e+00 1198.7 657 92.4
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 0.0e+00 1196.8 657 92.1
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 5.7e-241 837.8 682 68.0
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.5e-206 722.2 664 63.0
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 4.3e-196 688.7 646 62.7
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 2.1e-102 377.5 705 38.6
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 8.3e-99 365.5 445 47.0
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 7.0e-98 362.5 690 37.1
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 1.8e-93 347.8 686 37.5
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 1.9e-79 301.2 724 35.6
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 1.9e-79 301.2 698 35.0
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 1.1e-77 295.4 709 33.7
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 1.2e-76 292.0 723 34.2
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 8.4e-75 285.8 735 33.9
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 7.8e-73 279.3 769 32.0
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 1.7e-72 278.1 338 48.2
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 3.9e-72 276.9 744 34.0
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 5.1e-72 276.6 723 33.3
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 1.8e-69 268.1 709 34.6
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 6.9e-69 266.2 241 58.5
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 9.9e-68 262.3 391 43.7
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 2.2e-67 261.2 723 30.2
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 3.2e-66 257.3 727 31.6
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 9.3e-66 255.8 747 30.5
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.0e-64 252.3 433 42.3
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 1.0e-64 252.3 734 31.9
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 3.0e-64 250.8 756 30.7
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 2.1e-62 244.6 470 37.4
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 3.1e-61 240.7 754 31.8
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 6.9e-61 239.6 738 31.7
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 9.0e-61 239.2 738 31.7
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 1.2e-60 238.8 736 30.6
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 7.6e-60 236.1 713 30.7
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 1.7e-59 235.0 470 37.0
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 1.1e-58 232.3 805 29.8
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 4.2e-58 230.3 700 31.4
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 2.7e-57 227.6 675 31.0
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.0e-56 225.7 515 35.3
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 1.8e-56 224.9 735 31.8
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 3.0e-56 224.2 743 30.3
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 3.9e-56 223.8 538 34.4
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 1.5e-55 221.9 715 31.2
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 3.3e-55 220.7 406 36.9
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 3.3e-55 220.7 571 32.2
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 2.8e-54 217.6 246 51.6
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 6.2e-54 216.5 733 31.8
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 1.2e-52 212.2 401 36.7
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 5.5e-50 203.4 673 30.6
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 9.3e-50 202.6 243 50.6
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 3.5e-49 200.7 687 29.0
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 6.0e-49 199.9 419 36.0
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 1.1e-47 195.7 743 27.6
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 1.1e-47 195.7 569 31.8
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.1e-47 195.7 693 28.3
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.9e-47 194.9 738 28.5
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 4.3e-47 193.7 435 33.3
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 4.3e-47 193.7 435 34.3
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 1.6e-46 191.8 410 35.1
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 3.7e-46 190.7 692 27.7
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 3.7e-46 190.7 699 30.6
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 6.9e-45 186.4 715 31.3
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.0e-43 182.6 715 30.8
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 1.3e-43 182.2 734 26.7
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 2.2e-43 181.4 434 34.3
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 2.7e-41 174.5 711 30.4
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 4.6e-41 173.7 482 29.9
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 2.3e-40 171.4 459 33.3
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 5.1e-40 170.2 408 34.1
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 9.7e-39 166.0 659 28.1
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 3.7e-38 164.1 514 31.5
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 3.7e-38 164.1 429 34.0
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 6.3e-38 163.3 500 30.0
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.1e-37 162.5 689 28.2
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 1.4e-37 162.2 418 30.6
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 2.4e-37 161.4 400 35.8
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 3.1e-37 161.0 427 31.4
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 5.3e-37 160.2 483 31.1
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 7.7e-36 156.4 410 32.4
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 2.2e-35 154.8 500 31.0
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 5.0e-35 153.7 768 26.2
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 5.5e-34 150.2 764 27.0
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 5.5e-34 150.2 681 26.7
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 7.2e-34 149.8 374 33.2
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 7.2e-34 149.8 698 27.1
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 9.4e-34 149.4 303 35.6
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 2.1e-33 148.3 303 35.3
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 3.9e-32 144.1 367 35.1
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 4.4e-31 140.6 408 31.6
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.3e-27 129.0 104 60.6
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 1.4e-26 125.6 211 41.2
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 8.0e-25 119.8 670 26.3
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 5.2e-24 117.1 473 27.3
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 1.5e-23 115.5 219 37.0
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 2.6e-23 114.8 660 25.6
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 6.3e-22 110.2 477 26.2
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 5.9e-20 103.6 362 28.7
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.9e-19 101.3 240 31.2
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 7.2e-18 96.7 429 26.1
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 2.7e-17 94.7 362 27.9
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 4.7e-17 94.0 407 25.8
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 8.0e-17 93.2 356 29.8
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 1.8e-16 92.0 347 28.8
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 2.3e-16 91.7 354 28.5
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 8.8e-16 89.7 645 22.3
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 2.0e-15 88.6 319 29.5
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 5.7e-15 87.0 175 37.1
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 5.7e-15 87.0 213 36.2
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 9.7e-15 86.3 388 26.0
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 9.7e-15 86.3 388 26.0
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 1.3e-14 85.9 422 26.8
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.3e-14 85.9 214 32.2
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 1.7e-14 85.5 346 27.5
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 1.7e-14 85.5 288 28.8
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 1.7e-14 85.5 288 28.8
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 4.8e-14 84.0 203 35.0
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 8.3e-14 83.2 334 27.2
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 1.8e-13 82.0 335 27.5
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 1.8e-13 82.0 335 27.5
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 1.8e-13 82.0 335 27.5
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 1.8e-13 82.0 334 28.1
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 2.4e-13 81.6 388 25.8
Nitab4.5_0007728g0030 Nicotiana tabacum HOM05D007001 ORTHO05D005587 7.7e-12 76.6 101 43.6
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 3.2e-10 71.2 51 64.7
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 4.7e-09 67.4 416 26.2
Zm00001eb295010 Zea mays HOM05D024721 ORTHO05D025980 3.4e-07 61.2 290 23.1
HPP92_021324 Vanilla planifolia HOM05D007001 ORTHO05D005587 9.8e-07 59.7 285 27.0
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 8.3e-06 56.6 204 27.9


User provided reference genes

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