Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 0.0e+00 1343.2 697 100.0
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 0.0e+00 1328.2 697 98.4
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 0.0e+00 1318.9 697 98.0
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 0.0e+00 1140.9 660 90.9
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 3.9e-304 1047.7 678 82.6
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 2.9e-291 1005.0 685 78.1
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 3.2e-290 1001.5 685 77.2
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 8.5e-227 790.8 700 60.7
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 1.1e-223 780.4 680 60.9
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 5.0e-219 765.0 671 61.3
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 9.4e-218 760.8 601 64.4
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 1.6e-217 760.0 690 58.7
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 2.2e-214 749.6 644 61.8
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 1.5e-210 736.9 676 57.8
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 3.2e-210 735.7 664 59.5
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 1.0e-208 730.7 679 58.8
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 1.8e-208 729.9 682 58.1
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 2.6e-207 726.1 689 57.6
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 5.7e-207 724.9 680 57.1
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 7.5e-207 724.5 670 57.9
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 2.2e-206 723.0 680 57.8
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 4.9e-206 721.8 657 60.4
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 3.1e-205 719.2 689 57.0
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 7.0e-205 718.0 679 56.6
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 2.0e-204 716.5 646 58.0
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 2.7e-204 716.1 678 57.5
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 3.5e-204 715.7 657 58.0
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 3.8e-203 712.2 666 57.1
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 6.6e-203 711.4 682 56.9
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 8.6e-203 711.1 692 56.2
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 4.3e-202 708.8 666 56.5
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.2e-201 707.2 678 56.0
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 1.4e-200 703.7 649 58.4
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 7.5e-199 698.0 701 55.1
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 4.1e-197 692.2 666 55.0
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 2.0e-196 689.9 693 54.7
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 2.7e-196 689.5 673 56.0
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 7.8e-196 688.0 670 54.8
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 1.0e-195 687.6 696 55.6
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 1.3e-195 687.2 670 55.1
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.3e-195 687.2 689 55.4
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 1.7e-195 686.8 675 53.8
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.3e-195 686.4 689 55.7
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 3.0e-195 686.0 679 52.7
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 8.6e-195 684.5 683 54.3
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 9.5e-194 681.0 663 54.6
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 2.1e-193 679.9 679 52.3
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 2.1e-193 679.9 683 53.3
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 3.1e-192 676.0 656 56.4
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 4.0e-192 675.6 600 59.3
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 5.2e-192 675.2 778 50.1
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 6.8e-192 674.9 671 56.0
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.2e-191 674.1 618 58.4
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 1.2e-191 674.1 672 55.8
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 3.4e-191 672.5 680 54.6
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 4.9e-190 668.7 682 54.5
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 8.3e-190 667.9 650 56.2
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.1e-189 667.5 645 54.3
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 1.1e-189 667.5 682 54.4
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 1.2e-188 664.1 664 55.1
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 2.0e-188 663.3 667 54.4
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 2.7e-188 662.9 684 53.2
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 2.7e-188 662.9 667 53.5
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 6.0e-188 661.8 682 55.0
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 5.0e-187 658.7 752 50.5
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.5e-186 656.4 713 53.2
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 2.5e-186 656.4 678 51.3
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 2.5e-186 656.4 719 52.4
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 3.3e-186 656.0 713 52.7
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 3.3e-186 656.0 610 57.0
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 7.3e-186 654.8 671 55.7
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 9.5e-186 654.4 679 51.8
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 1.2e-185 654.1 669 53.1
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 2.8e-185 652.9 670 55.4
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 4.7e-185 652.1 651 53.5
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.1e-184 651.0 671 52.5
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.8e-184 650.2 680 52.5
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 6.8e-184 648.3 693 50.5
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 1.5e-183 647.1 678 50.7
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 4.4e-183 645.6 678 52.9
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 7.5e-183 644.8 729 50.8
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 6.4e-182 641.7 725 50.5
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 1.1e-181 641.0 609 54.5
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 1.6e-180 637.1 704 49.7
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 1.6e-180 637.1 682 53.5
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 3.5e-180 636.0 729 50.3
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 4.6e-180 635.6 703 48.9
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.3e-179 634.0 639 57.1
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 3.0e-179 632.9 648 55.7
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 1.5e-178 630.6 587 59.3
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 4.3e-178 629.0 676 52.5
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 4.3e-178 629.0 647 52.9
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 5.6e-178 628.6 661 53.9
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 1.2e-177 627.5 582 58.8
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 3.6e-177 625.9 684 51.5
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 4.7e-177 625.5 732 51.5
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 1.4e-176 624.0 620 54.5
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 3.1e-176 622.9 691 50.4
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 3.1e-176 622.9 687 50.1
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 6.8e-176 621.7 694 49.7
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 1.2e-175 620.9 675 50.8
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 5.8e-175 618.6 657 50.8
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 7.6e-175 618.2 646 52.2
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 1.7e-174 617.1 703 48.6
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 1.1e-170 604.4 540 59.8
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 7.3e-170 601.7 649 51.2
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 2.1e-169 600.1 693 47.5
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 2.1e-169 600.1 664 50.5
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 1.8e-168 597.0 650 51.4
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 3.4e-167 592.8 674 49.1
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 3.4e-167 592.8 655 49.8
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 7.6e-167 591.7 696 48.0
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 1.6e-164 583.9 677 50.8
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 2.9e-158 563.1 690 47.1
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 3.8e-158 562.8 715 46.7
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 6.4e-158 562.0 664 49.8
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 8.4e-158 561.6 676 47.8
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 2.1e-156 557.0 649 47.6
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 1.5e-154 550.8 636 49.8
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 1.6e-153 547.4 661 47.4
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 2.1e-153 547.0 661 47.4
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 1.8e-152 543.9 643 47.6
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 3.1e-152 543.1 601 51.1
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 1.3e-150 537.7 668 46.9
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 2.4e-149 533.5 715 46.2
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 6.7e-147 525.4 679 46.7
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 2.8e-145 520.0 459 60.6
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 1.5e-143 514.2 676 45.3
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 4.9e-142 509.2 679 45.1
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 2.5e-138 496.9 480 55.4
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.1e-130 471.5 492 52.4
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 5.0e-126 456.1 503 53.1
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 3.8e-118 429.9 669 41.3
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 1.1e-117 428.3 751 37.9
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 3.0e-115 420.2 667 40.5
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.5e-109 401.4 430 52.6
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 3.3e-106 390.2 497 45.3
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.7e-105 387.9 653 37.7
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 1.7e-102 377.9 686 37.5
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.1e-101 375.2 673 36.7
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 1.1e-101 375.2 645 38.4
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 2.1e-100 370.9 647 36.9
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 6.3e-97 359.4 405 50.1
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 4.2e-93 346.7 760 34.1
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 8.0e-92 342.4 750 34.8
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 4.4e-90 336.7 669 36.2
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 1.6e-87 328.2 633 36.2
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 2.9e-86 323.9 818 32.2
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 3.0e-83 313.9 652 35.7
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 8.9e-83 312.4 708 32.1
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 7.5e-82 309.3 501 38.5
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.5e-74 285.0 218 65.6
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 2.0e-74 284.6 557 36.1
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 4.4e-74 283.5 630 34.6
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.3e-73 282.0 214 65.0
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 2.2e-73 281.2 290 54.1
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 3.5e-71 273.9 517 36.9
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 3.1e-67 260.8 520 34.4
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 1.1e-64 252.3 386 40.2
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 2.9e-49 201.1 338 36.4
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.4e-32 145.6 251 37.5
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 2.1e-31 141.7 109 65.1
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 4.8e-28 130.6 186 40.3
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.9e-21 108.6 109 54.1
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 8.2e-20 103.2 66 75.8
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 1.3e-17 95.9 63 71.4
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 9.4e-16 89.7 118 44.1
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 8.8e-14 83.2 52 71.2
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 1.3e-12 79.3 153 35.9
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 1.7e-12 79.0 175 34.9
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 1.3e-09 69.3 54 53.7
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 1.4e-06 59.3 48 58.3


User provided reference genes

Program Settings