Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400000632 Solanum tuberosum HOM05D006819 ORTHO05D008763 1.2e-179 634.4 817 100.0
Solyc03g116560.1 Solanum lycopersicum HOM05D006819 ORTHO05D008763 1.2e-160 571.2 818 96.8
Sopen03g035470 Solanum pennellii HOM05D006819 ORTHO05D008763 2.3e-159 567.0 815 96.7
CAN.G407.98 Capsicum annuum HOM05D006819 ORTHO05D008763 1.2e-152 544.7 817 94.2
Nitab4.5_0010254g0010 Nicotiana tabacum HOM05D006819 ORTHO05D008763 1.3e-149 534.6 818 94.1
Nitab4.5_0001764g0060 Nicotiana tabacum HOM05D006819 ORTHO05D008763 1.9e-148 530.8 818 93.8
Peaxi162Scf00332g00075 Petunia axillaris HOM05D006819 ORTHO05D008763 4.8e-112 409.8 814 88.1
Dinv30584 Davidia involucrata HOM05D006819 ORTHO05D008763 6.1e-91 339.7 252 67.1
Actinidia01760 Actinidia chinensis HOM05D006819 ORTHO05D008763 2.5e-84 317.8 252 63.5
Lj5C69T16 Lonicera japonica HOM05D006819 ORTHO05D008763 1.1e-81 308.9 253 60.5
vmacro19477 Vaccinium macrocarpon HOM05D006819 ORTHO05D008763 3.8e-77 293.9 253 60.9
DCAR_025499 Daucus carota HOM05D006819 ORTHO05D008763 5.0e-77 293.5 253 60.1
CSS0026240 Camellia sinensis var. sinensis HOM05D006819 ORTHO05D008763 3.2e-76 290.8 223 65.5
Rhsim08G0214900 Rhododendron simsii HOM05D006819 ORTHO05D008763 1.6e-75 288.5 257 59.1
CSS0002572 Camellia sinensis var. sinensis HOM05D006819 ORTHO05D008763 2.7e-75 287.7 221 65.2
Cc04_g04190 Coffea canephora HOM05D006819 ORTHO05D008763 2.7e-75 287.7 250 60.0
Prupe.3G082900 Prunus persica HOM05D006819 ORTHO05D008763 1.7e-72 278.5 252 57.5
Rhsim04G0187400 Rhododendron simsii HOM05D006819 ORTHO05D008763 3.7e-72 277.3 257 58.8
Migut.D01062 Erythranthe guttata HOM05D006819 ORTHO05D008763 9.1e-71 272.7 253 53.4
HanXRQChr09g0274981 Helianthus annuus HOM05D006819 ORTHO05D008763 5.0e-69 266.9 252 54.0
TAR383G0223 Trochodendron aralioides HOM05D006819 ORTHO05D008763 1.9e-68 265.0 252 54.0
Lsat_1_v5_gn_4_106101 Lactuca sativa HOM05D006819 ORTHO05D008763 9.4e-68 262.7 251 53.8
Ciclev10024942m.g Citrus clementina HOM05D006819 ORTHO05D008763 1.0e-66 259.2 253 55.7
SGA_v2.0_scaffold16G07604 Striga asiatica HOM05D006819 ORTHO05D008763 1.8e-66 258.5 253 52.2
QL05p028543 Quercus lobata HOM05D006819 ORTHO05D008763 4.0e-66 257.3 252 55.2
MD17G1208200 Malus domestica HOM05D006819 ORTHO05D008763 1.5e-65 255.4 254 54.3
Cfa001984 Carpinus fangiana HOM05D006819 ORTHO05D008763 2.6e-65 254.6 252 54.0
Haze_16531 Corylus avellana HOM05D006819 ORTHO05D008763 2.6e-65 254.6 252 54.8
Nn8g39431 Nelumbo nucifera HOM05D006819 ORTHO05D008763 7.5e-65 253.1 252 54.0
Cpa.g.sc10.236 Carica papaya HOM05D006819 ORTHO05D008763 1.7e-64 251.9 253 54.9
Hund00538 Selenicereus undatus HOM05D006819 ORTHO05D008763 2.8e-64 251.1 253 52.2
AUR62016357 Chenopodium quinoa HOM05D006819 ORTHO05D008763 4.9e-64 250.4 250 53.2
RcHm_v2.0_Chr2g0136061 Rosa chinensis HOM05D006819 ORTHO05D008763 4.9e-64 250.4 253 52.6
SalBow2G3436 Salvia bowleyana HOM05D006819 ORTHO05D008763 4.9e-64 250.4 251 50.6
Atru.chr1.3043 Acer truncatum HOM05D006819 ORTHO05D008763 8.3e-64 249.6 255 54.9
SalBow2G2822 Salvia bowleyana HOM05D006819 ORTHO05D008763 1.1e-63 249.2 253 50.2
Duzib235G1541 Durio zibethinus HOM05D006819 ORTHO05D008763 1.8e-63 248.4 252 53.2
FvH4_6g30030 Fragaria vesca HOM05D006819 ORTHO05D008763 3.1e-63 247.7 253 53.8
FAN14G2986 Fragaria x ananassa HOM05D006819 ORTHO05D008763 3.1e-63 247.7 253 53.8
THA.LOC104815536 Tarenaya hassleriana HOM05D006819 ORTHO05D008763 3.1e-63 247.7 250 53.6
FAN05G3290 Fragaria x ananassa HOM05D006819 ORTHO05D008763 4.1e-63 247.3 252 53.6
EL10Ac9g21918 Beta vulgaris HOM05D006819 ORTHO05D008763 5.4e-63 246.9 250 52.4
ClCG07G012740 Citrullus lanatus HOM05D006819 ORTHO05D008763 1.2e-62 245.7 252 49.6
COL.COLO4_12924 Corchorus olitorius HOM05D006819 ORTHO05D008763 1.0e-61 242.7 253 52.6
CiPaw.02G155800 Carya illinoinensis HOM05D006819 ORTHO05D008763 1.3e-61 242.3 256 51.6
FAN09G2760 Fragaria x ananassa HOM05D006819 ORTHO05D008763 2.9e-61 241.1 253 52.6
CsaV3_4G001460 Cucumis sativus L. HOM05D006819 ORTHO05D008763 3.8e-61 240.7 252 48.4
GSVIVG01017297001 Vitis vinifera HOM05D006819 ORTHO05D008763 3.8e-61 240.7 252 51.2
Lj3g0013909 Lotus japonicus HOM05D006819 ORTHO05D008763 8.6e-61 239.6 250 51.2
AUR62011538 Chenopodium quinoa HOM05D006819 ORTHO05D008763 1.5e-60 238.8 255 51.0
ECA232G0226 Erigeron canadensis HOM05D006819 ORTHO05D008763 5.6e-60 236.9 254 50.8
Sed0026792 Sechium edule HOM05D006819 ORTHO05D008763 5.6e-60 236.9 253 51.4
arahy.Tifrunner.gnm1.ann1.6R2JPG Arachis hypogaea HOM05D006819 ORTHO05D008763 2.8e-59 234.6 250 49.6
arahy.Tifrunner.gnm1.ann1.GQ0MHW Arachis hypogaea HOM05D006819 ORTHO05D008763 2.8e-59 234.6 250 49.6
MELO3C017894.2 Cucumis melo HOM05D006819 ORTHO05D008763 6.1e-59 233.4 252 48.8
AL1G60900 Arabidopsis lyrata HOM05D006819 ORTHO05D008763 8.0e-59 233.0 248 50.4
AT1G52620 Arabidopsis thaliana HOM05D006819 ORTHO05D008763 1.0e-58 232.6 253 49.4
arahy.Tifrunner.gnm1.ann1.6PYW3K Arachis hypogaea HOM05D006819 ORTHO05D008763 1.0e-58 232.6 250 49.6
arahy.Tifrunner.gnm1.ann1.UYKR6J Arachis hypogaea HOM05D006819 ORTHO05D008763 1.0e-58 232.6 250 49.6
Sc10g0005770 Simmondsia chinensis HOM05D006819 ORTHO05D008763 1.4e-58 232.3 252 51.2
Sp1g39170 Schrenkiella parvula HOM05D006819 ORTHO05D008763 1.8e-58 231.9 253 49.8
Aqoxy7G03720 Aquilegia oxysepala HOM05D006819 ORTHO05D008763 5.2e-58 230.3 254 48.0
Lalb_Chr22g0350931 Lupinus albus HOM05D006819 ORTHO05D008763 5.2e-58 230.3 252 48.4
PGR031G3623 Punica granatum HOM05D006819 ORTHO05D008763 5.2e-58 230.3 257 49.8
TPR.G37179 Trifolium pratense HOM05D006819 ORTHO05D008763 1.5e-57 228.8 252 48.8
TWI18G0691 Tripterygium wilfordii HOM05D006819 ORTHO05D008763 2.0e-57 228.4 252 51.2
Potri.001G139200 Populus trichocarpa HOM05D006819 ORTHO05D008763 3.4e-57 227.6 252 49.2
Medtr2g103520 Medicago truncatula HOM05D006819 ORTHO05D008763 9.8e-57 226.1 253 49.4
Aa31LG10G2400 Aethionema arabicum HOM05D006819 ORTHO05D008763 2.9e-56 224.6 250 48.4
Carub.0001s4161 Capsella rubella HOM05D006819 ORTHO05D008763 4.9e-56 223.8 253 50.6
Glyma.13G364500 Glycine max HOM05D006819 ORTHO05D008763 1.3e-53 215.7 254 46.9
BraA06t23391Z Brassica rapa HOM05D006819 ORTHO05D008763 1.9e-52 211.8 253 47.4
A06p01730 Brassica napus HOM05D006819 ORTHO05D008763 2.5e-52 211.5 253 47.0
Glyma.15G009300 Glycine max HOM05D006819 ORTHO05D008763 9.5e-52 209.5 249 46.2
Sabra01G0108200 Salix brachista HOM05D006819 ORTHO05D008763 6.2e-51 206.8 246 47.2
Ca_20110_v3 Cicer arietinum L. HOM05D006819 ORTHO05D008763 5.2e-50 203.8 300 41.0
Phvul.005G176600 Phaseolus vulgaris HOM05D006819 ORTHO05D008763 8.9e-50 203.0 250 46.0
BcaC08g43437 Brassica carinata HOM05D006819 ORTHO05D008763 1.2e-49 202.6 254 46.9
C06p08050 Brassica napus HOM05D006819 ORTHO05D008763 1.2e-49 202.6 254 46.9
BolC6t35888H Brassica oleracea HOM05D006819 ORTHO05D008763 1.2e-49 202.6 254 46.9
Eucgr.J03057 Eucalyptus grandis HOM05D006819 ORTHO05D008763 2.9e-48 198.0 256 45.3
PSO210G6668 Papaver somniferum HOM05D006819 ORTHO05D008763 3.2e-47 194.5 256 44.9
Gorai.011G068600 Gossypium raimondii HOM05D006819 ORTHO05D008763 4.1e-47 194.1 225 48.4
CDE02G2030 Ceratophyllum demersum HOM05D006819 ORTHO05D008763 1.6e-46 192.2 250 46.0
Gohir.D10G064600 Gossypium hirsutum HOM05D006819 ORTHO05D008763 7.8e-46 189.9 225 47.6
PSO210G0638 Papaver somniferum HOM05D006819 ORTHO05D008763 7.8e-46 189.9 255 43.5
VMungo1080G1389 Vigna mungo HOM05D006819 ORTHO05D008763 1.6e-43 182.2 251 41.4
CARHR042740 Cardamine hirsuta HOM05D006819 ORTHO05D008763 2.1e-43 181.8 229 46.3
Ah.01g020740 Amaranthus hybridus HOM05D006819 ORTHO05D008763 2.8e-43 181.4 202 47.5
Manes.11G054300 Manihot esculenta HOM05D006819 ORTHO05D008763 1.4e-42 179.1 218 45.0
CAN.G273.13 Capsicum annuum HOM05D000004 ORTHO05D000002 2.3e-42 178.3 103 87.4
Thhalv10011244m.g Eutrema salsugineum HOM05D006819 ORTHO05D008763 8.9e-42 176.4 225 45.3
SHI20606 Sapria himalayana HOM05D006819 ORTHO05D008763 1.6e-38 165.6 224 40.2
Psat5g301600 Pisum sativum HOM05D006819 ORTHO05D008763 1.1e-36 159.5 252 38.9
Sc25g0002730 Simmondsia chinensis HOM05D006819 ORTHO05D008763 2.1e-35 155.2 201 45.8
Oeu015243.5 Olea europaea HOM05D006819 ORTHO05D008763 1.3e-32 146.0 110 60.0
Thecc.06G069300 Theobroma cacao HOM05D006819 ORTHO05D008763 9.2e-31 139.8 125 55.2
Actinidia15785 Actinidia chinensis HOM05D006819 ORTHO05D008763 7.8e-30 136.7 105 64.8
SEGI_26115 Sequoiadendron giganteum HOM05D006819 ORTHO05D008763 1.9e-28 132.1 228 36.0
SalBow2G3112 Salvia bowleyana HOM05D006819 ORTHO05D008763 1.1e-26 126.3 112 54.5
ATR0322G052 Amborella trichopoda HOM05D006819 ORTHO05D008763 2.0e-25 122.1 128 47.7
Psat0s2501g0040 Pisum sativum HOM05D006819 ORTHO05D008763 1.7e-24 119.0 140 47.9
Psat0s2501g0080 Pisum sativum HOM05D006819 ORTHO05D008763 1.7e-24 119.0 140 47.9
Gohir.A10G062900 Gossypium hirsutum HOM05D006819 ORTHO05D008763 2.1e-22 112.1 120 47.5
Oeu026322.1 Olea europaea HOM05D006819 ORTHO05D008763 6.0e-22 110.5 96 57.3
Atru.chr4.3032 Acer truncatum HOM05D006819 ORTHO05D008763 2.3e-21 108.6 109 53.2
Zm00001eb196310 Zea mays HOM05D006819 ORTHO05D008763 3.0e-21 108.2 258 32.6
FAN02G4037 Fragaria x ananassa HOM05D006819 ORTHO05D008763 3.9e-13 81.3 57 64.9
HPP92_002305 Vanilla planifolia HOM05D008254 ORTHO05D010423 4.8e-11 74.3 234 25.6
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 4.0e-10 71.2 231 26.4
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 5.3e-10 70.9 186 25.8
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 1.2e-09 69.7 233 23.2
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 4.5e-09 67.8 229 25.3
SGA_v2.0_scaffold60G20860 Striga asiatica HOM05D000104 ORTHO05D009920 5.8e-09 67.4 163 28.2
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 1.7e-08 65.9 243 23.5
VMungo1309G1576 Vigna mungo HOM05D000104 ORTHO05D009920 2.9e-08 65.1 228 23.2
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 6.4e-08 63.9 136 27.9
QL04p067861 Quercus lobata HOM05D005764 ORTHO05D006600 6.4e-08 63.9 263 24.3
arahy.Tifrunner.gnm1.ann1.UTK222 Arachis hypogaea HOM05D000104 ORTHO05D009920 8.4e-08 63.5 231 24.2
PSO675G3831 Papaver somniferum HOM05D003056 ORTHO05D003422 8.4e-08 63.5 264 26.9
Sabra05G0084800 Salix brachista HOM05D006556 ORTHO05D008146 1.1e-07 63.2 187 28.9
TPR.G11140 Trifolium pratense HOM05D006858 ORTHO05D008767 1.1e-07 63.2 199 25.6
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.1e-07 63.2 274 24.1
arahy.Tifrunner.gnm1.ann1.H4NKJU Arachis hypogaea HOM05D000104 ORTHO05D009920 1.4e-07 62.8 243 23.0
arahy.Tifrunner.gnm1.ann1.JWX42Q Arachis hypogaea HOM05D000104 ORTHO05D009920 1.4e-07 62.8 231 24.2
Manes.08G089400 Manihot esculenta HOM05D000104 ORTHO05D009920 1.9e-07 62.4 221 25.3
Glyma.12G191600 Glycine max HOM05D000104 ORTHO05D009920 2.4e-07 62.0 175 24.0
Sabra04G0077900 Salix brachista HOM05D000424 ORTHO05D000355 3.2e-07 61.6 237 24.1
PGSC0003DMG400008266 Solanum tuberosum HOM05D007675 ORTHO05D009699 3.2e-07 61.6 277 22.7
COL.COLO4_20322 Corchorus olitorius HOM05D000162 ORTHO05D000090 4.2e-07 61.2 178 26.4
Potri.005G102400 Populus trichocarpa HOM05D006556 ORTHO05D008146 4.2e-07 61.2 187 27.3
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 4.2e-07 61.2 186 25.3
AUR62018101 Chenopodium quinoa HOM05D006569 ORTHO05D007515 5.5e-07 60.8 146 29.5
Hma1.2p1_0631F.1_g192390 Hydrangea macrophylla HOM05D006556 ORTHO05D008146 5.5e-07 60.8 187 25.7
Lalb_Chr03g0040111 Lupinus albus HOM05D000104 ORTHO05D009920 5.5e-07 60.8 233 21.9
PSO541G6324 Papaver somniferum HOM05D003056 ORTHO05D003422 5.5e-07 60.8 159 28.3
Phvul.009G206300 Phaseolus vulgaris HOM05D000104 ORTHO05D009920 7.1e-07 60.5 170 25.3
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 1.2e-06 59.7 169 24.3
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 1.2e-06 59.7 169 24.3
CSS0042104 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 1.6e-06 59.3 223 24.2
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 1.6e-06 59.3 181 25.4
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 1.6e-06 59.3 211 29.4
Cpa.g.sc211.34 Carica papaya HOM05D005764 ORTHO05D006600 2.1e-06 58.9 247 23.9
Haze_02747 Corylus avellana HOM05D000104 ORTHO05D009920 2.1e-06 58.9 199 24.6
Potri.004G102700 Populus trichocarpa HOM05D000424 ORTHO05D000355 2.1e-06 58.9 258 24.0
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 2.7e-06 58.5 152 28.3
Rhsim04G0212000 Rhododendron simsii HOM05D001150 ORTHO05D000998 2.7e-06 58.5 212 24.1
Sed0002743 Sechium edule HOM05D000104 ORTHO05D009920 2.7e-06 58.5 226 22.6
Sopen03g035440 Solanum pennellii HOM05D000424 ORTHO05D000355 2.7e-06 58.5 223 24.2
TAR629G2305 Trochodendron aralioides HOM05D000104 ORTHO05D009920 2.7e-06 58.5 230 23.5
CAN.G630.43 Capsicum annuum HOM05D007675 ORTHO05D009699 3.5e-06 58.2 252 24.2
COL.COLO4_21653 Corchorus olitorius HOM05D000162 ORTHO05D000090 3.5e-06 58.2 177 27.1
CsaV3_4G027960 Cucumis sativus L. HOM05D000104 ORTHO05D009920 3.5e-06 58.2 164 23.2
PSO339G1228 Papaver somniferum HOM05D007172 ORTHO05D009267 3.5e-06 58.2 181 26.5
Psat3g158640 Pisum sativum HOM05D000104 ORTHO05D009920 3.5e-06 58.2 166 24.1
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 6.0e-06 57.4 259 22.8
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 6.0e-06 57.4 242 21.1
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 7.9e-06 57.0 198 24.7
Potri.014G056400 Populus trichocarpa HOM05D000104 ORTHO05D009920 7.9e-06 57.0 161 25.5
Thecc.01G387700 Theobroma cacao HOM05D000104 ORTHO05D009920 7.9e-06 57.0 213 24.4


User provided reference genes

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