Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400000622 Solanum tuberosum HOM05D002526 ORTHO05D010157 1.2e-169 599.7 303 100.0
Solyc03g116770.3 Solanum lycopersicum HOM05D002526 ORTHO05D010157 1.9e-162 575.9 303 95.7
Sopen03g035690 Solanum pennellii HOM05D002526 ORTHO05D010157 5.1e-160 567.8 304 94.7
CAN.G407.78 Capsicum annuum HOM05D002526 ORTHO05D000105 2.7e-137 492.3 294 86.4
Nitab4.5_0008560g0050 Nicotiana tabacum HOM05D001442 ORTHO05D010157 6.9e-125 451.1 301 78.1
Nitab4.5_0003463g0050 Nicotiana tabacum HOM05D001442 ORTHO05D001369 3.8e-123 445.3 286 80.1
Peaxi162Scf00332g00625 Petunia axillaris HOM05D002526 ORTHO05D010157 6.5e-123 444.5 304 77.6
Dinv30612 Davidia involucrata HOM05D002526 ORTHO05D004039 8.9e-80 301.2 272 61.0
CSS0025449 Camellia sinensis var. sinensis HOM05D002526 ORTHO05D004039 2.6e-79 299.7 259 61.0
vmacro19003 Vaccinium macrocarpon HOM05D002526 ORTHO05D010157 5.4e-77 292.0 271 59.0
Hma1.2p1_0242F.1_g100630 Hydrangea macrophylla HOM05D002526 ORTHO05D010157 1.2e-76 290.8 301 55.1
Actinidia15756 Actinidia chinensis HOM05D002526 ORTHO05D010157 4.6e-76 288.9 295 55.6
CiPaw.01G248800 Carya illinoinensis HOM05D002526 ORTHO05D004039 1.7e-75 287.0 261 59.0
TWI18G0347 Tripterygium wilfordii HOM05D002526 ORTHO05D010157 4.7e-73 278.9 248 57.7
QL03p020400 Quercus lobata HOM05D002526 ORTHO05D010157 1.8e-72 276.9 311 50.8
QL05p030835 Quercus lobata HOM05D002526 ORTHO05D010157 1.8e-72 276.9 311 50.8
Haze_16568 Corylus avellana HOM05D002526 ORTHO05D004039 3.1e-72 276.2 302 52.3
Prupe.3G088600 Prunus persica HOM05D002526 ORTHO05D010157 5.2e-72 275.4 252 57.1
FvH4_6g29541 Fragaria vesca HOM05D002526 ORTHO05D010157 2.9e-70 269.6 247 57.1
FAN14G4319 Fragaria x ananassa HOM05D002526 ORTHO05D010157 2.9e-70 269.6 247 57.1
MD17G1213300 Malus domestica HOM05D002526 ORTHO05D010157 2.9e-70 269.6 282 52.8
Nn2g12105 Nelumbo nucifera HOM05D002526 ORTHO05D010157 4.9e-70 268.9 294 53.7
Potri.001G202300 Populus trichocarpa HOM05D002526 ORTHO05D010157 6.4e-70 268.5 251 57.0
Manes.04G112150 Manihot esculenta HOM05D002526 ORTHO05D004039 2.4e-69 266.5 269 54.6
RcHm_v2.0_Chr2g0135091 Rosa chinensis HOM05D002526 ORTHO05D010157 7.1e-69 265.0 246 55.3
Lj5A73G68 Lonicera japonica HOM05D002526 ORTHO05D010157 2.1e-68 263.5 294 53.4
SGA_v2.0_scaffold5G02704 Striga asiatica HOM05D002526 ORTHO05D010157 6.0e-68 261.9 272 54.0
Duzib192G0551 Durio zibethinus HOM05D002526 ORTHO05D010157 3.0e-67 259.6 230 58.3
Hund00650 Selenicereus undatus HOM05D002526 ORTHO05D010157 3.0e-67 259.6 235 57.9
Hund00651 Selenicereus undatus HOM05D002526 ORTHO05D010157 8.6e-67 258.1 235 57.9
Atru.chr1.2906 Acer truncatum HOM05D002526 ORTHO05D010157 4.3e-66 255.8 262 54.6
GSVIVG01017348001 Vitis vinifera HOM05D002526 ORTHO05D004039 2.1e-65 253.4 300 48.7
Migut.I00757 Erythranthe guttata HOM05D002526 ORTHO05D010157 3.6e-65 252.7 291 50.2
Gohir.A05G122650 Gossypium hirsutum HOM05D002526 ORTHO05D010157 3.6e-65 252.7 224 58.0
Cc04_g04450 Coffea canephora HOM05D002526 ORTHO05D010157 6.2e-65 251.9 277 49.8
COL.COLO4_11933 Corchorus olitorius HOM05D002526 ORTHO05D004039 6.2e-65 251.9 277 50.5
Gorai.009G127500 Gossypium raimondii HOM05D002526 ORTHO05D010157 6.2e-65 251.9 224 58.0
Thecc.06G028700 Theobroma cacao HOM05D002526 ORTHO05D010157 8.9e-64 248.1 269 50.6
Ciclev10024867m.g Citrus clementina HOM05D002526 ORTHO05D004039 1.5e-63 247.3 269 50.9
SalBow2G1951 Salvia bowleyana HOM05D002526 ORTHO05D010157 1.1e-61 241.1 289 46.0
CANSAT56G1960 Cannabis sativa HOM05D002526 ORTHO05D010157 9.2e-61 238.0 266 50.0
Oeu045127.1 Olea europaea HOM05D002526 ORTHO05D010157 4.6e-60 235.7 221 58.4
Lsat_1_v5_gn_4_88500 Lactuca sativa HOM05D002526 ORTHO05D010157 1.0e-59 234.6 269 48.3
Actinidia01740 Actinidia chinensis HOM05D002526 ORTHO05D010157 1.5e-58 230.7 270 51.5
AUR62016503 Chenopodium quinoa HOM05D002526 ORTHO05D010157 5.6e-58 228.8 219 54.3
AL1G27410 Arabidopsis lyrata HOM05D002526 ORTHO05D010157 6.2e-57 225.3 238 50.4
Carub.0001s1507 Capsella rubella HOM05D002526 ORTHO05D010157 6.2e-57 225.3 242 49.2
AUR62011678 Chenopodium quinoa HOM05D002526 ORTHO05D010157 1.8e-56 223.8 219 53.4
Aqoxy7G03644 Aquilegia oxysepala HOM05D002526 ORTHO05D010157 3.1e-56 223.0 271 48.3
Sp1g13640 Schrenkiella parvula HOM05D002526 ORTHO05D010157 4.0e-56 222.6 228 50.9
AT1G15320 Arabidopsis thaliana HOM05D002526 ORTHO05D010157 9.0e-56 221.5 242 50.0
CARHR015850 Cardamine hirsuta HOM05D002526 ORTHO05D010157 9.0e-56 221.5 242 48.3
Aa31LG7G90 Aethionema arabicum HOM05D002526 ORTHO05D010157 1.5e-55 220.7 228 50.9
Thhalv10008365m.g Eutrema salsugineum HOM05D002526 ORTHO05D010157 1.5e-55 220.7 274 44.5
BraA06t24312Z Brassica rapa HOM05D002526 ORTHO05D010157 3.8e-54 216.1 242 48.3
ECA232G1362 Erigeron canadensis HOM05D002526 ORTHO05D010157 6.4e-54 215.3 281 46.3
A06p11330 Brassica napus HOM05D002526 ORTHO05D010157 8.4e-54 214.9 227 50.7
BolC5t30082H Brassica oleracea HOM05D002526 ORTHO05D010157 1.1e-53 214.5 227 50.7
EL10Ac9g22041 Beta vulgaris HOM05D002526 ORTHO05D010157 1.0e-51 208.0 267 45.7
THA.LOC104812514 Tarenaya hassleriana HOM05D002526 ORTHO05D010157 1.0e-51 208.0 224 50.9
FAN02G2169 Fragaria x ananassa HOM05D002526 ORTHO05D010157 1.3e-51 207.6 193 57.0
Gohir.D05G123550 Gossypium hirsutum HOM05D002526 ORTHO05D010157 2.8e-49 199.9 180 57.8
Sc15g0001450 Simmondsia chinensis HOM05D002526 ORTHO05D010157 6.2e-49 198.7 225 48.4
BcaC05g25469 Brassica carinata HOM05D002526 ORTHO05D010157 2.0e-47 193.7 229 47.6
PSO161G0040 Papaver somniferum HOM05D002526 ORTHO05D010157 4.2e-45 186.0 262 43.5
PGR102G2637 Punica granatum HOM05D002526 ORTHO05D010157 7.1e-45 185.3 263 44.1
Ah.01g021710 Amaranthus hybridus HOM05D002526 ORTHO05D010157 4.3e-42 176.0 182 52.2
DCAR_025516 Daucus carota HOM05D002526 ORTHO05D004039 4.3e-42 176.0 244 43.4
C05p13450 Brassica napus HOM05D002526 ORTHO05D010157 8.1e-41 171.8 186 50.5
FAN02G0105 Fragaria x ananassa HOM05D002526 ORTHO05D010157 9.6e-34 148.3 116 64.7
unitig_0.g1112 Utricularia gibba HOM05D002081 ORTHO05D002088 3.4e-31 139.8 229 38.4
Cpa.g.sc938.3 Carica papaya HOM05D002526 ORTHO05D010157 7.6e-31 138.7 213 41.3
BcaC03g16017 Brassica carinata HOM05D002526 ORTHO05D010157 5.1e-19 99.4 83 54.2
BcaC01g00573 Brassica carinata HOM05D002526 ORTHO05D010157 7.4e-18 95.5 83 54.2
SEGI_30845 Sequoiadendron giganteum HOM05D002526 ORTHO05D010157 5.3e-16 89.4 207 30.9
SEGI_27567 Sequoiadendron giganteum HOM05D002526 ORTHO05D010157 9.1e-16 88.6 207 29.5
HPP92_021873 Vanilla planifolia HOM05D002526 ORTHO05D010157 1.2e-15 88.2 220 32.3
C09p66980 Brassica napus HOM05D002526 ORTHO05D010157 7.9e-12 75.5 82 43.9
C04p35770 Brassica napus HOM05D002526 ORTHO05D010157 5.1e-11 72.8 67 50.7
BcaC02g09864 Brassica carinata HOM05D002526 ORTHO05D010157 6.7e-11 72.4 204 26.5
BolC2t09789H Brassica oleracea HOM05D002526 ORTHO05D010157 6.7e-11 72.4 204 26.5
BolC4t25223H Brassica oleracea HOM05D002526 ORTHO05D010157 6.7e-11 72.4 204 26.5
C02p37700 Brassica napus HOM05D002526 ORTHO05D010157 2.0e-10 70.9 204 26.0
COL.COLO4_12110 Corchorus olitorius HOM05D001914 ORTHO05D000623 7.4e-10 68.9 269 26.4
C03p81490 Brassica napus HOM05D002526 ORTHO05D010157 6.3e-09 65.9 204 25.5
BolC3t20420H Brassica oleracea HOM05D002526 ORTHO05D010157 6.3e-09 65.9 204 25.5
AUR62000548 Chenopodium quinoa HOM05D000828 ORTHO05D000623 5.0e-06 56.2 212 27.8


User provided reference genes

Program Settings