Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 4.3e-46 188.0 119 100.0
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 7.6e-43 177.2 119 91.6
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.0e-39 166.8 119 89.1
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.4e-36 155.6 116 86.2
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.0e-36 154.8 119 83.2
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.0e-35 152.5 116 83.6
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 2.2e-34 149.1 120 70.0
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.9e-34 147.9 112 85.7
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 4.9e-34 147.9 112 83.0
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 2.5e-33 145.6 112 82.1
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 2.7e-32 142.1 120 71.7
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 3.0e-31 138.7 117 78.6
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 7.4e-30 134.0 119 66.4
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 9.6e-30 133.7 108 78.7
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 9.6e-30 133.7 119 71.4
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.8e-28 129.4 119 64.7
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 6.9e-28 127.5 99 71.7
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 6.9e-28 127.5 111 73.0
Peaxi162Scf01650g00008 Petunia axillaris HOM05D003381 ORTHO05D003880 6.9e-28 127.5 120 73.3
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 2.6e-27 125.6 119 68.9
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.8e-26 121.7 110 68.2
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 1.4e-25 119.8 123 58.5
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 2.7e-24 115.5 117 69.2
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 1.0e-23 113.6 107 62.6
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 1.0e-23 113.6 112 58.9
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 1.3e-23 113.2 114 63.2
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 5.1e-23 111.3 114 71.9
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 6.7e-23 110.9 110 70.0
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 1.9e-22 109.4 117 57.3
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 3.3e-22 108.6 108 67.6
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 4.3e-22 108.2 113 61.9
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 9.7e-22 107.1 112 60.7
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 3.1e-20 102.1 121 53.7
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 6.9e-20 100.9 88 69.3
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 6.9e-20 100.9 88 69.3
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 6.9e-20 100.9 112 51.8
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 2.0e-19 99.4 111 55.0
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 3.4e-19 98.6 89 62.9
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 5.9e-19 97.8 98 55.1
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 5.9e-19 97.8 118 64.4
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 7.7e-19 97.4 111 52.3
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.0e-18 97.1 98 53.1
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.0e-18 97.1 98 53.1
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.7e-18 96.3 111 54.1
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 2.9e-18 95.5 92 58.7
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 5.0e-18 94.7 109 55.0
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 6.5e-18 94.4 118 56.8
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 6.5e-18 94.4 100 56.0
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 8.5e-18 94.0 98 59.2
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 8.5e-18 94.0 111 59.5
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 8.5e-18 94.0 84 63.1
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.1e-17 93.6 98 51.0
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 1.4e-17 93.2 93 67.7
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 2.5e-17 92.4 94 62.8
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 2.5e-17 92.4 95 61.1
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 5.5e-17 91.3 107 55.1
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 7.2e-17 90.9 90 62.2
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 1.2e-16 90.1 116 54.3
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.1e-16 89.4 120 50.0
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 2.1e-16 89.4 118 48.3
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 3.6e-16 88.6 83 61.4
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 3.6e-16 88.6 83 61.4
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 3.6e-16 88.6 100 65.0
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 4.6e-16 88.2 89 53.9
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 4.6e-16 88.2 86 72.1
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 4.6e-16 88.2 86 76.7
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 4.6e-16 88.2 86 76.7
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 7.9e-16 87.4 90 52.2
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 7.9e-16 87.4 107 63.6
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 1.0e-15 87.0 107 53.3
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.8e-15 86.3 107 62.6
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 2.3e-15 85.9 59 76.3
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 3.0e-15 85.5 86 73.3
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 3.0e-15 85.5 92 54.3
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 3.0e-15 85.5 90 54.4
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 5.1e-15 84.7 79 62.0
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 5.1e-15 84.7 79 60.8
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 5.1e-15 84.7 90 54.4
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 6.7e-15 84.3 103 49.5
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 8.8e-15 84.0 115 47.8
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 8.8e-15 84.0 97 64.9
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 2.0e-14 82.8 103 64.1
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 2.0e-14 82.8 93 60.2
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 2.5e-14 82.4 103 61.2
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 3.3e-14 82.0 91 56.0
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 3.3e-14 82.0 75 76.0
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 4.3e-14 81.6 95 63.2
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 5.7e-14 81.3 88 55.7
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 5.7e-14 81.3 107 58.9
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 5.7e-14 81.3 92 58.7
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 5.7e-14 81.3 83 57.8
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 9.7e-14 80.5 80 57.5
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 1.3e-13 80.1 103 46.6
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.3e-13 80.1 114 55.3
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 1.3e-13 80.1 84 52.4
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 1.3e-13 80.1 116 47.4
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 1.7e-13 79.7 74 60.8
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.7e-13 79.7 94 60.6
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 1.7e-13 79.7 123 44.7
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 2.2e-13 79.3 84 52.4
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 2.8e-13 79.0 127 42.5
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 4.8e-13 78.2 80 55.0
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 4.8e-13 78.2 113 44.2
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 4.8e-13 78.2 85 56.5
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 6.3e-13 77.8 83 55.4
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 6.3e-13 77.8 84 54.8
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 8.2e-13 77.4 84 53.6
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 8.2e-13 77.4 118 57.6
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 1.1e-12 77.0 81 54.3
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 1.8e-12 76.3 114 46.5
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 1.8e-12 76.3 91 53.8
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 2.4e-12 75.9 96 49.0
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 3.1e-12 75.5 86 51.2
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 6.9e-12 74.3 90 45.6
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 6.9e-12 74.3 84 54.8
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 6.9e-12 74.3 78 51.3
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 6.9e-12 74.3 83 53.0
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 9.1e-12 73.9 83 53.0
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.2e-11 73.6 88 47.7
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 1.5e-11 73.2 101 62.4
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 1.5e-11 73.2 95 48.4
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 2.6e-11 72.4 77 54.5
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 2.6e-11 72.4 95 48.4
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 3.4e-11 72.0 74 54.1
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 7.7e-11 70.9 73 72.6
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 1.0e-10 70.5 86 45.3
Thecc.03G212300 Theobroma cacao HOM05D003381 ORTHO05D003880 3.8e-10 68.6 117 53.0
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 5.0e-10 68.2 108 43.5
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 5.0e-10 68.2 68 57.4
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 5.0e-10 68.2 82 47.6
MBI12_g33141_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 6.5e-10 67.8 99 57.6
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 6.5e-10 67.8 80 51.2
MBI12_g23072_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 1.1e-09 67.0 100 57.0
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 1.1e-09 67.0 87 51.7
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.9e-09 66.2 96 46.9
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 2.5e-09 65.9 96 46.9
MBI12_g23073_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 3.2e-09 65.5 89 60.7
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 5.5e-09 64.7 99 41.4
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 7.2e-09 64.3 93 47.3
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 7.2e-09 64.3 107 46.7
Eucgr.K00529 Eucalyptus grandis HOM05D003381 ORTHO05D003880 7.2e-09 64.3 88 47.7
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 7.2e-09 64.3 97 52.6
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 9.4e-09 63.9 96 44.8
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 1.2e-08 63.5 96 45.8
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 1.2e-08 63.5 96 45.8
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 1.6e-08 63.2 96 45.8
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 1.6e-08 63.2 86 45.3
Duzib205G0505 Durio zibethinus HOM05D003381 ORTHO05D003880 2.1e-08 62.8 93 57.0
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 2.7e-08 62.4 88 43.2
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 3.6e-08 62.0 95 46.3
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 3.6e-08 62.0 99 44.4
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 4.7e-08 61.6 88 46.6
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 6.1e-08 61.2 94 43.6
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 6.1e-08 61.2 83 48.2
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 7.9e-08 60.8 89 48.3
CARHR158580 Cardamine hirsuta HOM05D003381 ORTHO05D003880 7.9e-08 60.8 96 45.8
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 7.9e-08 60.8 90 44.4
Duzib068G1330 Durio zibethinus HOM05D003381 ORTHO05D003880 7.9e-08 60.8 104 53.8
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 1.0e-07 60.5 78 47.4
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.0e-07 60.5 93 45.2
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.4e-07 60.1 93 45.2
CiPaw.06G038100 Carya illinoinensis HOM05D003381 ORTHO05D003880 1.4e-07 60.1 91 58.2
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 1.8e-07 59.7 89 48.3
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 1.8e-07 59.7 89 48.3
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.8e-07 59.7 89 44.9
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 2.3e-07 59.3 92 46.7
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 2.3e-07 59.3 80 46.2
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 3.0e-07 58.9 90 44.4
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 3.9e-07 58.5 80 47.5
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 3.9e-07 58.5 80 45.0
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 3.9e-07 58.5 80 45.0
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 3.9e-07 58.5 80 45.0
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 3.9e-07 58.5 80 45.0
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 3.9e-07 58.5 80 45.0
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 5.1e-07 58.2 80 47.5
Peaxi162Scf00542g00013 Petunia axillaris HOM05D003381 ORTHO05D003880 5.1e-07 58.2 57 63.2
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 6.7e-07 57.8 90 43.3
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 6.7e-07 57.8 85 44.7
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 6.7e-07 57.8 90 43.3
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 6.7e-07 57.8 90 43.3
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 6.7e-07 57.8 86 43.0
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 2.0e-06 56.2 80 45.0
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 2.0e-06 56.2 84 42.9
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 2.0e-06 56.2 87 41.4
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 3.3e-06 55.5 77 44.2
Os10g0509401 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 5.7e-06 54.7 87 47.1
Os10g0509600 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 9.7e-06 53.9 92 40.2


User provided reference genes

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