Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.1e-99 366.7 188 100.0
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 5.9e-98 360.9 188 97.9
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 2.9e-97 358.6 188 97.3
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 3.0e-94 348.6 190 95.3
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.4e-91 339.7 188 91.0
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 4.1e-91 338.2 188 91.0
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 2.2e-89 332.4 188 88.8
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.1e-88 330.1 188 88.3
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.9e-88 329.3 204 84.3
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.5e-88 328.9 189 89.9
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.5e-88 328.9 188 89.4
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 7.2e-88 327.4 194 85.6
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 6.1e-87 324.3 190 86.3
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 1.0e-86 323.6 188 84.6
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 1.8e-86 322.8 189 84.7
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 3.0e-86 322.0 190 85.3
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 6.7e-86 320.9 193 83.4
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 3.3e-85 318.5 189 84.1
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 4.4e-85 318.2 189 84.1
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.3e-84 316.6 195 83.1
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 8.2e-84 313.9 189 83.1
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 1.4e-83 313.2 194 82.5
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 1.8e-83 312.8 189 83.1
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 1.8e-83 312.8 194 82.0
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 1.8e-83 312.8 191 81.7
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 3.1e-83 312.0 193 81.3
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 3.1e-83 312.0 193 80.3
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 5.3e-83 311.2 193 81.3
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 7.0e-83 310.8 191 80.6
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 7.0e-83 310.8 194 80.9
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 7.0e-83 310.8 192 81.8
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 7.0e-83 310.8 197 79.7
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 9.1e-83 310.5 192 81.8
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 1.2e-82 310.1 193 80.3
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.2e-82 310.1 197 78.2
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 1.6e-82 309.7 194 79.9
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 1.6e-82 309.7 193 80.3
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 1.6e-82 309.7 194 81.4
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 2.0e-82 309.3 191 79.6
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 2.6e-82 308.9 193 80.3
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 5.9e-82 307.8 191 81.2
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 5.9e-82 307.8 193 79.8
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 5.9e-82 307.8 192 80.7
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 7.7e-82 307.4 190 79.5
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 7.7e-82 307.4 189 81.0
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 1.0e-81 307.0 194 79.4
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 1.3e-81 306.6 190 80.0
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.3e-81 306.6 198 77.3
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 3.8e-81 305.1 194 79.9
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 6.5e-81 304.3 191 80.1
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 6.5e-81 304.3 193 79.8
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 8.5e-81 303.9 192 78.1
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 4.2e-80 301.6 195 77.4
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 5.5e-80 301.2 189 79.9
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 9.4e-80 300.4 194 78.4
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 9.4e-80 300.4 194 78.4
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.2e-79 300.1 194 77.3
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 1.6e-79 299.7 199 74.9
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 1.6e-79 299.7 199 74.9
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 1.6e-79 299.7 199 74.9
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.6e-79 299.7 198 75.8
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 2.1e-79 299.3 199 74.4
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 2.1e-79 299.3 194 77.8
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 2.7e-79 298.9 199 74.4
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 2.7e-79 298.9 196 77.6
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 2.7e-79 298.9 199 75.9
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 6.1e-79 297.7 199 74.4
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 6.1e-79 297.7 199 74.4
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 6.1e-79 297.7 196 76.5
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.4e-78 296.6 199 74.9
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.4e-78 296.6 201 74.6
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 1.8e-78 296.2 199 73.9
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 2.3e-78 295.8 189 79.9
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 3.0e-78 295.4 199 73.9
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 3.0e-78 295.4 199 73.9
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 4.0e-78 295.0 198 73.7
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 4.0e-78 295.0 192 74.0
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 5.2e-78 294.7 199 74.9
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 6.7e-78 294.3 212 72.2
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 8.8e-78 293.9 200 74.5
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 8.8e-78 293.9 200 74.5
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 8.8e-78 293.9 196 77.0
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 8.8e-78 293.9 198 76.3
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 1.2e-77 293.5 194 75.8
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 1.2e-77 293.5 200 74.0
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 1.5e-77 293.1 197 74.1
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 1.5e-77 293.1 197 74.1
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.5e-77 293.1 202 75.2
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 2.0e-77 292.7 197 73.6
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.0e-77 292.7 200 73.5
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 2.0e-77 292.7 201 74.6
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 2.0e-77 292.7 237 65.0
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.4e-77 291.6 206 73.8
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 9.7e-77 290.4 194 72.7
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 9.7e-77 290.4 201 73.6
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 1.3e-76 290.0 201 73.6
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.2e-76 289.3 201 71.1
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 2.8e-76 288.9 196 74.0
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 3.7e-76 288.5 198 73.7
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 4.8e-76 288.1 203 71.4
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 4.8e-76 288.1 201 70.6
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.4e-75 286.6 203 70.0
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.4e-75 285.8 201 71.6
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 4.1e-75 285.0 192 75.5
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 5.3e-75 284.6 194 74.7
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 7.0e-75 284.3 194 74.7
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 2.7e-74 282.3 198 72.7
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 5.9e-74 281.2 204 69.1
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 1.3e-73 280.0 198 72.7
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 6.5e-73 277.7 196 69.9
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 6.5e-73 277.7 198 72.7
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 8.5e-73 277.3 174 80.5
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 1.5e-72 276.6 191 74.3
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 1.9e-72 276.2 202 70.3
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 1.2e-71 273.5 195 72.3
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 1.2e-71 273.5 171 77.8
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 8.0e-71 270.8 211 68.2
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 1.8e-70 269.6 199 69.8
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 3.0e-70 268.9 186 72.6
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.2e-70 268.1 175 77.1
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 8.8e-70 267.3 198 68.2
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 2.6e-69 265.8 223 63.2
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 7.5e-69 264.2 210 67.1
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 9.8e-69 263.8 192 71.4
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 1.3e-68 263.5 204 68.1
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 1.7e-68 263.1 192 69.8
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 4.8e-68 261.5 187 71.7
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 6.3e-68 261.2 180 72.8
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 8.3e-68 260.8 197 66.0
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.2e-66 256.9 181 69.6
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 2.7e-66 255.8 233 61.4
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 2.7e-66 255.8 196 65.3
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 4.5e-66 255.0 201 66.7
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 5.9e-66 254.6 183 69.4
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 5.5e-64 248.1 184 66.3
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 1.2e-63 246.9 190 68.9
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 1.5e-61 240.0 213 60.6
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 3.4e-61 238.8 199 59.8
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 4.4e-61 238.4 176 68.8
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 1.4e-59 233.4 182 65.9
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 1.2e-58 230.3 201 62.2
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 2.7e-58 229.2 177 67.8
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 9.5e-56 220.7 188 62.2
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 7.8e-50 201.1 122 82.8
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 5.0e-49 198.4 153 66.0
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 3.4e-45 185.7 116 76.7
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 4.6e-42 175.3 171 56.1
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 6.0e-42 174.9 100 90.0
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.3e-41 173.7 99 90.9
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.1e-40 170.6 102 83.3
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 6.4e-36 154.8 188 51.1
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 2.4e-35 152.9 97 79.4
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 5.2e-30 135.2 191 46.1
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 5.8e-29 131.7 70 92.9
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.4e-27 127.1 103 64.1
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 9.2e-27 124.4 202 41.6
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 9.2e-27 124.4 75 76.0
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 4.6e-26 122.1 193 38.3
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.5e-24 117.1 72 75.0
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 1.2e-21 107.5 177 37.3
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 1.3e-20 104.0 188 42.0
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 2.2e-20 103.2 100 60.0
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 3.2e-19 99.4 72 72.2
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 2.7e-18 96.3 188 40.4
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 1.7e-17 93.6 67 64.2
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 5.6e-16 88.6 163 38.0
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 1.8e-14 83.6 61 62.3
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 3.1e-14 82.8 52 67.3
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 4.5e-13 79.0 51 76.5
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.3e-12 77.4 51 74.5
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 6.0e-10 68.6 55 58.2
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 5.1e-09 65.5 72 52.8


User provided reference genes

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