Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400000320 Solanum tuberosum HOM05D003277 ORTHO05D003275 2.6e-59 231.9 117 100.0
Solyc12g007040.3 Solanum lycopersicum HOM05D003277 ORTHO05D003275 8.8e-52 206.8 117 92.3
Sopen12g003020 Solanum pennellii HOM05D003277 ORTHO05D003275 9.7e-51 203.4 117 90.6
Nitab4.5_0003537g0060 Nicotiana tabacum HOM05D003277 ORTHO05D003275 2.2e-42 175.6 108 81.5
Peaxi162Scf00546g00117 Petunia axillaris HOM05D003277 ORTHO05D003275 5.4e-41 171.0 117 74.4
Sopen12g003040 Solanum pennellii HOM05D003277 ORTHO05D003275 3.5e-40 168.3 114 79.8
PGSC0003DMG400000318 Solanum tuberosum HOM05D003277 ORTHO05D003275 5.9e-40 167.5 114 77.2
Sopen12g003030 Solanum pennellii HOM05D003277 ORTHO05D003275 2.5e-38 162.2 117 76.1
PGSC0003DMG400000319 Solanum tuberosum HOM05D003277 ORTHO05D003275 8.0e-37 157.1 117 72.6
Nitab4.5_0011350g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 8.9e-36 153.7 114 71.1
Peaxi162Scf00560g00019 Petunia axillaris HOM05D003277 ORTHO05D003275 4.3e-30 134.8 141 58.9
Nitab4.5_0011350g0020 Nicotiana tabacum HOM05D003277 ORTHO05D003275 5.4e-17 91.3 65 69.2
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 9.2e-17 90.5 117 52.1
RhsimUnG0085500 Rhododendron simsii HOM05D003277 ORTHO05D003275 2.7e-16 89.0 105 49.5
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 6.0e-16 87.8 116 48.3
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 1.7e-15 86.3 105 46.7
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 5.6e-14 81.3 120 43.3
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 1.2e-13 80.1 71 57.7
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 1.6e-13 79.7 115 43.5
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 2.8e-13 79.0 106 45.3
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 2.8e-13 79.0 115 46.1
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 1.4e-12 76.6 120 43.3
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 2.3e-12 75.9 120 40.8
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 4.0e-12 75.1 93 45.2
Lsat_1_v5_gn_8_93781 Lactuca sativa HOM05D000750 ORTHO05D000714 5.2e-12 74.7 100 49.0
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 1.2e-11 73.6 115 39.1
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 1.2e-11 73.6 100 48.0
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.2e-11 73.6 115 42.6
Prupe.7G229300 Prunus persica HOM05D003277 ORTHO05D003275 1.2e-11 73.6 119 41.2
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 1.5e-11 73.2 114 44.7
CANSAT56G3518 Cannabis sativa HOM05D003277 ORTHO05D003275 2.6e-11 72.4 125 36.8
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 2.6e-11 72.4 113 40.7
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 9.9e-11 70.5 71 49.3
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 9.9e-11 70.5 106 42.5
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 1.7e-10 69.7 116 40.5
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 1.7e-10 69.7 116 39.7
DCAR_021143 Daucus carota HOM05D003277 ORTHO05D003275 2.2e-10 69.3 113 41.6
Manes.16G117100 Manihot esculenta HOM05D003277 ORTHO05D003275 2.2e-10 69.3 103 46.6
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 2.2e-10 69.3 80 48.8
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 2.9e-10 68.9 97 40.2
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 3.7e-10 68.6 78 46.2
TPR.G27852 Trifolium pratense HOM05D003277 ORTHO05D003275 3.7e-10 68.6 100 44.0
AUR62011006 Chenopodium quinoa HOM05D000030 ORTHO05D000009 6.4e-10 67.8 101 39.6
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 8.3e-10 67.4 79 44.3
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 1.4e-09 66.6 114 40.4
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 1.9e-09 66.2 74 45.9
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 1.9e-09 66.2 87 44.8
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 1.9e-09 66.2 105 40.0
Ciclev10010574m.g Citrus clementina HOM05D003277 ORTHO05D003275 2.4e-09 65.9 117 39.3
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 2.4e-09 65.9 70 48.6
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 3.2e-09 65.5 103 38.8
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 3.2e-09 65.5 96 37.5
Glyma.09G189600 Glycine max HOM05D003277 ORTHO05D003275 4.1e-09 65.1 67 53.7
Medtr3g109430 Medicago truncatula HOM05D003277 ORTHO05D003275 4.1e-09 65.1 116 40.5
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 5.4e-09 64.7 99 38.4
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 5.4e-09 64.7 106 39.6
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 5.4e-09 64.7 84 42.9
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 5.4e-09 64.7 106 39.6
FAN23G0772 Fragaria x ananassa HOM05D000750 ORTHO05D000714 5.4e-09 64.7 109 42.2
Psat0s1478g0280 Pisum sativum HOM05D003277 ORTHO05D003275 5.4e-09 64.7 114 38.6
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 5.4e-09 64.7 93 41.9
ATR1120G187 Amborella trichopoda HOM05D003277 ORTHO05D003275 7.1e-09 64.3 89 43.8
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 7.1e-09 64.3 72 44.4
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 7.1e-09 64.3 96 39.6
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 7.1e-09 64.3 107 42.1
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 9.2e-09 63.9 80 41.2
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 1.2e-08 63.5 83 37.3
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 1.2e-08 63.5 72 43.1
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.6e-08 63.2 91 38.5
DCAR_010449 Daucus carota HOM05D003277 ORTHO05D003275 2.1e-08 62.8 81 53.1
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 2.7e-08 62.4 84 41.7
Phvul.004G162400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.7e-08 62.4 115 39.1
RcHm_v2.0_Chr2g0137921 Rosa chinensis HOM05D003277 ORTHO05D003275 2.7e-08 62.4 69 47.8
Lsat_1_v5_gn_7_40601 Lactuca sativa HOM05D003277 ORTHO05D003275 3.5e-08 62.0 100 41.0
vmacro18910 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 3.5e-08 62.0 75 45.3
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 6.0e-08 61.2 109 43.1
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 6.0e-08 61.2 109 43.1
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 6.0e-08 61.2 77 41.6
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 6.0e-08 61.2 77 41.6
FAN26G0013 Fragaria x ananassa HOM05D003277 ORTHO05D003275 7.8e-08 60.8 109 42.2
MD17G1194700 Malus domestica HOM05D003277 ORTHO05D003275 7.8e-08 60.8 70 47.1
Peaxi162Scf00015g00042 Petunia axillaris HOM05D003277 ORTHO05D003275 7.8e-08 60.8 95 40.0
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 7.8e-08 60.8 115 34.8
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.0e-07 60.5 91 38.5
COL.COLO4_26960 Corchorus olitorius HOM05D003277 ORTHO05D003275 1.0e-07 60.5 103 41.7
Lj1g0024029 Lotus japonicus HOM05D003277 ORTHO05D003275 1.0e-07 60.5 114 36.8
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.0e-07 60.5 95 38.9
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 1.0e-07 60.5 73 45.2
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 1.7e-07 59.7 77 42.9
Sed0006476 Sechium edule HOM05D003277 ORTHO05D003275 1.7e-07 59.7 103 40.8
EL10Ac2g02521 Beta vulgaris HOM05D003277 ORTHO05D003275 2.3e-07 59.3 73 41.1
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 2.3e-07 59.3 78 41.0
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 2.3e-07 59.3 77 44.2
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.3e-07 59.3 116 36.2
vmacro18909 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 2.3e-07 59.3 74 43.2
Atru.chr7.1333 Acer truncatum HOM05D003277 ORTHO05D003275 3.0e-07 58.9 65 47.7
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 3.0e-07 58.9 70 47.1
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 3.9e-07 58.5 79 40.5
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 3.9e-07 58.5 78 41.0
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 3.9e-07 58.5 76 44.7
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 3.9e-07 58.5 109 36.7
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 3.9e-07 58.5 109 36.7
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 3.9e-07 58.5 84 36.9
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 5.1e-07 58.2 79 44.3
ATR1120G137 Amborella trichopoda HOM05D003277 ORTHO05D003275 5.1e-07 58.2 107 35.5
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 5.1e-07 58.2 95 38.9
SGA_v2.0_scaffold27G11531 Striga asiatica HOM05D003277 ORTHO05D003275 5.1e-07 58.2 108 36.1
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 6.6e-07 57.8 78 39.7
CANSAT56G1808 Cannabis sativa HOM05D003277 ORTHO05D003275 6.6e-07 57.8 71 46.5
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 6.6e-07 57.8 72 44.4
Phvul.005G171100 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 6.6e-07 57.8 72 44.4
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 6.6e-07 57.8 72 44.4
PGSC0003DMG400005684 Solanum tuberosum HOM05D003277 ORTHO05D003275 8.6e-07 57.4 95 37.9
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 1.1e-06 57.0 77 39.0
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 1.1e-06 57.0 115 36.5
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.1e-06 57.0 117 34.2
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.1e-06 57.0 117 34.2
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 1.1e-06 57.0 117 34.2
Nitab4.5_0005851g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.1e-06 57.0 95 37.9
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 1.5e-06 56.6 103 34.0
Solyc03g120170.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 1.5e-06 56.6 97 37.1
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 1.5e-06 56.6 72 41.7
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 1.9e-06 56.2 114 36.8
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 1.9e-06 56.2 101 38.6
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.5e-06 55.8 114 36.8
Oeu036629.1 Olea europaea HOM05D003277 ORTHO05D003275 2.5e-06 55.8 103 37.9
Psat6g033640 Pisum sativum HOM05D003277 ORTHO05D003275 2.5e-06 55.8 101 32.7
VMungo0331G0823 Vigna mungo HOM05D003277 ORTHO05D003275 2.5e-06 55.8 96 38.5
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 3.3e-06 55.5 113 37.2
FAN28G0377 Fragaria x ananassa HOM05D000750 ORTHO05D000714 3.3e-06 55.5 106 40.6
Glyma.08G206600 Glycine max HOM05D003277 ORTHO05D003275 3.3e-06 55.5 96 38.5
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.3e-06 55.5 77 40.3
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.3e-06 55.5 77 40.3
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 3.3e-06 55.5 77 40.3
Solyc06g066710.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 3.3e-06 55.5 84 36.9
Sopen03g039050 Solanum pennellii HOM05D003277 ORTHO05D003275 3.3e-06 55.5 95 37.9
CiPaw.08G022600 Carya illinoinensis HOM05D003277 ORTHO05D003275 4.3e-06 55.1 98 40.8
CsaV3_1G030570 Cucumis sativus L. HOM05D003277 ORTHO05D003275 4.3e-06 55.1 66 40.9
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 4.3e-06 55.1 114 36.0
Phvul.010G150400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 4.3e-06 55.1 96 37.5
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 5.6e-06 54.7 84 35.7
Lalb_Chr25g0279671 Lupinus albus HOM05D003277 ORTHO05D003275 7.3e-06 54.3 72 45.8
CAN.G438.69 Capsicum annuum HOM05D003277 ORTHO05D003275 9.5e-06 53.9 82 40.2
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 9.5e-06 53.9 73 39.7
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 9.5e-06 53.9 73 39.7
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 9.5e-06 53.9 73 39.7
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 9.5e-06 53.9 73 39.7
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 9.5e-06 53.9 118 33.1
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 9.5e-06 53.9 74 41.9
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 9.5e-06 53.9 72 44.4


User provided reference genes

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