Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.8e-282 975.3 523 100.0
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 1.1e-274 949.5 523 93.9
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.6e-273 945.7 523 94.3
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 7.8e-209 730.7 433 81.3
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 4.3e-207 724.9 433 80.8
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 5.3e-205 718.0 434 83.4
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 9.0e-205 717.2 498 73.1
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 5.8e-204 714.5 370 92.7
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 8.4e-203 710.7 446 76.2
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 3.0e-200 702.2 421 78.1
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 3.9e-200 701.8 425 79.1
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 6.7e-200 701.0 496 69.0
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 4.3e-199 698.4 496 68.5
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 1.8e-197 693.0 456 72.6
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 2.4e-197 692.6 438 76.3
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 5.3e-197 691.4 460 72.0
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 1.2e-196 690.3 509 66.8
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.2e-196 690.3 555 67.0
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 2.0e-196 689.5 431 74.5
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 3.4e-196 688.7 442 76.0
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 3.4e-196 688.7 441 74.4
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 3.4e-196 688.7 429 77.4
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 5.8e-196 688.0 428 77.3
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 5.8e-196 688.0 446 75.1
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 2.2e-195 686.0 420 77.4
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 2.9e-195 685.6 420 76.7
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 1.1e-194 683.7 452 72.6
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 2.4e-194 682.6 456 72.6
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 5.5e-194 681.4 436 74.8
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.2e-193 680.2 460 71.7
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 1.6e-193 679.9 462 70.6
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 1.6e-193 679.9 436 73.4
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 4.6e-193 678.3 435 73.3
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 4.6e-193 678.3 452 71.9
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 4.6e-193 678.3 422 76.8
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 7.9e-193 677.6 437 74.1
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 7.9e-193 677.6 441 73.2
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 1.3e-192 676.8 419 76.4
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 1.8e-192 676.4 440 72.0
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 1.8e-192 676.4 484 68.6
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 3.9e-192 675.2 431 74.2
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 3.9e-192 675.2 429 73.9
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 1.1e-191 673.7 439 72.9
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 1.1e-191 673.7 433 74.6
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 1.5e-191 673.3 439 72.7
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 1.5e-191 673.3 439 72.7
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 1.5e-191 673.3 439 73.8
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 3.3e-191 672.2 452 70.8
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 7.4e-191 671.0 439 72.9
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 7.4e-191 671.0 491 65.6
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 9.6e-191 670.6 394 79.7
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 2.1e-190 669.5 444 71.6
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 8.2e-190 667.5 444 72.5
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 8.2e-190 667.5 449 72.2
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 1.4e-189 666.8 450 71.1
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 1.8e-189 666.4 422 74.6
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 2.4e-189 666.0 444 74.5
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 4.0e-189 665.2 422 74.4
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 6.9e-189 664.5 443 71.1
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 2.0e-188 662.9 425 73.9
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 2.6e-188 662.5 457 72.2
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 4.5e-188 661.8 419 74.5
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 4.5e-188 661.8 422 74.2
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 4.5e-188 661.8 457 71.6
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 1.3e-187 660.2 458 69.0
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.3e-187 660.2 418 80.9
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 4.9e-187 658.3 532 63.2
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 1.1e-186 657.1 439 71.5
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 1.1e-186 657.1 473 68.1
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 1.1e-186 657.1 451 70.1
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 1.4e-186 656.8 427 75.4
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 4.2e-186 655.2 437 71.9
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 1.6e-185 653.3 457 70.5
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 1.6e-185 653.3 457 70.5
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 2.1e-185 652.9 450 72.2
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 4.6e-185 651.7 421 75.5
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 1.0e-184 650.6 501 64.7
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 3.0e-184 649.0 466 69.3
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 3.0e-184 649.0 466 69.3
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 3.9e-184 648.7 488 67.0
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 6.7e-184 647.9 496 67.3
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 8.7e-184 647.5 460 70.0
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 8.7e-184 647.5 460 70.0
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 8.7e-184 647.5 417 73.6
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 1.5e-183 646.7 456 69.7
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 1.5e-183 646.7 481 68.0
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 1.5e-183 646.7 481 68.0
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.5e-183 646.7 446 70.9
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 2.5e-183 646.0 492 67.1
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 2.5e-183 646.0 441 71.7
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 3.3e-183 645.6 438 71.9
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 3.3e-183 645.6 446 70.6
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 5.7e-183 644.8 500 66.8
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 7.4e-183 644.4 429 73.9
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 1.3e-182 643.7 569 59.6
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 6.3e-182 641.3 471 67.9
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 3.1e-181 639.0 433 71.1
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 5.5e-178 628.2 399 76.2
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.6e-177 625.5 437 69.6
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 4.6e-177 625.2 423 71.6
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.0e-176 624.0 475 66.3
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.0e-176 622.5 475 66.1
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.8e-174 615.1 474 65.8
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.1e-173 614.0 512 61.9
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.4e-173 612.8 493 67.7
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 3.1e-173 612.5 415 75.4
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 3.4e-172 609.0 419 72.8
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 2.2e-171 606.3 419 69.7
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 3.8e-171 605.5 428 68.7
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 6.5e-171 604.7 416 75.7
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 2.7e-169 599.4 507 60.6
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 3.6e-169 599.0 460 65.4
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 4.7e-169 598.6 504 63.1
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 2.6e-167 592.8 453 66.2
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 2.6e-164 582.8 453 66.0
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 5.5e-162 575.1 494 56.7
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 8.0e-161 571.2 540 59.3
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 1.4e-160 570.5 519 57.8
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 3.0e-160 569.3 369 74.5
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 2.0e-159 566.6 420 64.5
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 2.0e-159 566.6 441 67.3
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 2.6e-159 566.2 409 68.2
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.3e-158 563.9 428 61.9
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.1e-157 560.8 511 56.4
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 7.0e-157 558.1 420 66.7
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.0e-155 554.3 416 65.9
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 3.2e-154 549.3 352 75.9
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 2.3e-152 543.1 460 63.0
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 2.6e-151 539.7 368 69.3
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 9.7e-151 537.7 456 64.7
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 1.7e-150 537.0 408 66.2
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 8.5e-147 524.6 440 60.7
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 9.8e-143 511.1 374 68.2
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 2.3e-139 500.0 354 70.3
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 3.3e-138 496.1 468 57.9
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.2e-137 494.2 401 61.6
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 1.0e-136 491.1 373 66.5
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 4.0e-136 489.2 349 70.8
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 5.2e-136 488.8 332 71.4
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 9.2e-133 478.0 423 60.3
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 1.2e-132 477.6 348 67.5
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.6e-132 477.2 322 73.3
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 3.5e-132 476.1 405 61.7
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 2.3e-128 463.4 325 70.2
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.5e-119 434.1 354 60.5
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 7.3e-114 415.2 278 73.7
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 1.2e-113 414.5 338 62.7
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 4.0e-112 409.5 301 69.4
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 6.6e-99 365.5 434 46.3
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 9.0e-96 355.1 210 78.6
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 3.9e-83 313.2 221 74.2
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 6.2e-73 279.3 151 78.8
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 5.3e-72 276.2 218 64.7
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 8.2e-65 252.3 192 60.4
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 2.0e-63 247.7 169 72.2
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 3.4e-63 246.9 237 59.9
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 6.1e-60 236.1 155 74.2
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 7.9e-60 235.7 160 61.9
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 5.1e-59 233.0 404 33.4
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.3e-58 230.3 433 36.7
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 5.5e-53 213.0 500 31.0
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 8.2e-49 199.1 104 83.7
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 3.5e-47 193.7 127 76.4
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.1e-21 109.0 230 31.7
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 5.5e-21 106.7 197 33.0
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 1.8e-16 91.7 49 85.7
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 1.6e-15 88.6 54 68.5
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 1.6e-15 88.6 125 46.4
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 7.8e-15 86.3 49 71.4
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 1.5e-10 72.0 106 39.6
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 2.9e-09 67.8 39 74.4
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 2.9e-09 67.8 63 46.0
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 3.5e-07 60.8 42 66.7
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 1.7e-06 58.5 40 67.5
Peaxi162Scf00126g01016 Petunia axillaris HOM05D004042 ORTHO05D306396 6.6e-06 56.6 25 92.0


User provided reference genes

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