Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400000196 Solanum tuberosum HOM05D003118 ORTHO05D003618 4.5e-172 607.8 309 100.0
Solyc01g095130.4 Solanum lycopersicum HOM05D003118 ORTHO05D003618 6.5e-70 268.5 299 56.2
Sopen01g038920 Solanum pennellii HOM05D003118 ORTHO05D003618 1.8e-64 250.4 347 48.1
Nitab4.5_0010695g0020 Nicotiana tabacum HOM05D003118 ORTHO05D003618 1.3e-57 227.6 214 60.3
Peaxi162Scf00020g01526 Petunia axillaris HOM05D003118 ORTHO05D003618 1.4e-56 224.2 232 56.0
Nitab4.5_0000915g0080 Nicotiana tabacum HOM05D003118 ORTHO05D003618 8.5e-54 214.9 256 52.3
Cfa003868 Carpinus fangiana HOM05D003118 ORTHO05D003618 6.8e-27 125.6 241 32.8
GSVIVG01026971001 Vitis vinifera HOM05D003118 ORTHO05D003618 6.8e-27 125.6 296 31.4
GSVIVG01026973001 Vitis vinifera HOM05D003118 ORTHO05D003618 5.8e-26 122.5 292 31.5
TAR375G0293 Trochodendron aralioides HOM05D003118 ORTHO05D003618 1.9e-24 117.5 382 27.0
Haze_15568 Corylus avellana HOM05D003118 ORTHO05D003618 1.2e-23 114.8 284 29.6
QL04p055623 Quercus lobata HOM05D003118 ORTHO05D003618 7.8e-23 112.1 392 25.5
CiPaw.01G067900 Carya illinoinensis HOM05D003118 ORTHO05D003618 4.3e-21 106.3 263 29.3
TAR629G1012 Trochodendron aralioides HOM05D003118 ORTHO05D003618 4.3e-21 106.3 389 24.4
Aqoxy7G00197 Aquilegia oxysepala HOM05D003118 ORTHO05D003618 7.6e-18 95.5 299 27.8
CSS0022485 Camellia sinensis var. sinensis HOM05D003118 ORTHO05D003618 2.9e-17 93.6 253 27.3
Dinv37591 Davidia involucrata HOM05D003118 ORTHO05D003618 4.9e-17 92.8 257 28.0
Lsat_1_v5_gn_7_2680 Lactuca sativa HOM05D003118 ORTHO05D003618 1.1e-16 91.7 361 24.4
arahy.Tifrunner.gnm1.ann1.9S2WM4 Arachis hypogaea HOM05D003118 ORTHO05D003618 1.4e-16 91.3 257 25.3
Actinidia28342 Actinidia chinensis HOM05D003118 ORTHO05D003618 1.2e-15 88.2 379 24.0
MSTRG.13862 Avicennia marina HOM05D003118 ORTHO05D003618 1.2e-15 88.2 244 27.5
Manes.02G016600 Manihot esculenta HOM05D003118 ORTHO05D003618 1.6e-15 87.8 388 22.9
GSVIVG01019423001 Vitis vinifera HOM05D003118 ORTHO05D003618 1.6e-15 87.8 313 25.9
Dinv38896 Davidia involucrata HOM05D003118 ORTHO05D003618 6.0e-15 85.9 252 25.8
Glyma.11G020900 Glycine max HOM05D003118 ORTHO05D003618 7.8e-15 85.5 421 20.4
Cc02_g38610 Coffea canephora HOM05D003118 ORTHO05D003618 2.3e-14 84.0 153 34.6
PSO063G6388 Papaver somniferum HOM05D003118 ORTHO05D003618 2.3e-14 84.0 265 27.2
PSO384G4267 Papaver somniferum HOM05D003118 ORTHO05D003618 2.3e-14 84.0 297 24.6
Hund11431 Selenicereus undatus HOM05D003118 ORTHO05D003618 2.3e-14 84.0 249 26.1
Nn6g32462 Nelumbo nucifera HOM05D003118 ORTHO05D003618 3.0e-14 83.6 290 26.2
vmacro11412 Vaccinium macrocarpon HOM05D003118 ORTHO05D003618 3.0e-14 83.6 318 25.5
Glyma.01G222500 Glycine max HOM05D003118 ORTHO05D003618 3.9e-14 83.2 400 20.5
PSO266G0031 Papaver somniferum HOM05D003118 ORTHO05D003618 3.9e-14 83.2 297 24.6
Ca_24533_v3 Cicer arietinum L. HOM05D003118 ORTHO05D003618 5.1e-14 82.8 402 20.9
Rhsim02G0236100 Rhododendron simsii HOM05D003118 ORTHO05D003618 5.1e-14 82.8 314 24.5
PSO170G3062 Papaver somniferum HOM05D003118 ORTHO05D003618 8.6e-14 82.0 265 26.8
TWI81G0015 Tripterygium wilfordii HOM05D003118 ORTHO05D003618 8.6e-14 82.0 239 26.4
HanXRQChr04g0120811 Helianthus annuus HOM05D003118 ORTHO05D003618 1.1e-13 81.6 244 29.5
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 1.9e-13 80.9 257 27.2
EL10Ac5g12842 Beta vulgaris HOM05D003118 ORTHO05D003618 2.5e-13 80.5 230 27.4
Lsat_1_v5_gn_6_84940 Lactuca sativa HOM05D003118 ORTHO05D003618 2.5e-13 80.5 260 26.2
VMungo1215G2430 Vigna mungo HOM05D003118 ORTHO05D003618 2.5e-13 80.5 239 25.5
Medtr5g009920 Medicago truncatula HOM05D003118 ORTHO05D003618 3.3e-13 80.1 274 24.8
Potri.003G133000 Populus trichocarpa HOM05D003118 ORTHO05D003618 3.3e-13 80.1 238 26.9
DCAR_004609 Daucus carota HOM05D003118 ORTHO05D003618 7.3e-13 79.0 255 27.1
CANSAT21G0202 Cannabis sativa HOM05D003118 ORTHO05D003618 1.2e-12 78.2 288 24.0
MBI07_g11721_MAGBIO Magnolia biondii HOM05D003118 ORTHO05D003618 1.2e-12 78.2 185 29.2
QL02p033293 Quercus lobata HOM05D003118 ORTHO05D003618 1.2e-12 78.2 252 25.4
Sabra03G0095300 Salix brachista HOM05D003118 ORTHO05D003618 1.2e-12 78.2 238 25.6
Gohir.A08G114000 Gossypium hirsutum HOM05D003118 ORTHO05D003618 1.6e-12 77.8 238 27.7
Gohir.D08G134400 Gossypium hirsutum HOM05D003118 ORTHO05D003618 1.6e-12 77.8 238 27.7
Gorai.004G137500 Gossypium raimondii HOM05D003118 ORTHO05D003618 1.6e-12 77.8 238 27.7
RcHm_v2.0_Chr7g0196521 Rosa chinensis HOM05D003118 ORTHO05D003618 1.6e-12 77.8 244 25.4
TWI14G1154 Tripterygium wilfordii HOM05D003118 ORTHO05D003618 1.6e-12 77.8 438 21.0
FvH4_5g03250 Fragaria vesca HOM05D003118 ORTHO05D003618 2.1e-12 77.4 245 25.7
Haze_08750 Corylus avellana HOM05D003118 ORTHO05D003618 2.8e-12 77.0 176 28.4
Duzib205G0707 Durio zibethinus HOM05D003118 ORTHO05D003618 3.6e-12 76.6 256 26.6
FAN13G0863 Fragaria x ananassa HOM05D003118 ORTHO05D003618 3.6e-12 76.6 245 25.7
Oeu042365.1 Olea europaea HOM05D003118 ORTHO05D003618 4.7e-12 76.3 243 26.7
SGA_v2.0_scaffold173G39132 Striga asiatica HOM05D003118 ORTHO05D003618 4.7e-12 76.3 403 22.8
Phvul.002G160400 Phaseolus vulgaris HOM05D003118 ORTHO05D003618 6.2e-12 75.9 245 24.1
arahy.Tifrunner.gnm1.ann1.78DXCF Arachis hypogaea HOM05D003118 ORTHO05D003618 8.1e-12 75.5 254 24.4
Migut.E01210 Erythranthe guttata HOM05D003118 ORTHO05D003618 8.1e-12 75.5 253 24.1
TPR.G6616 Trifolium pratense HOM05D003118 ORTHO05D003618 8.1e-12 75.5 274 24.1
Thecc.03G287000 Theobroma cacao HOM05D003118 ORTHO05D003618 1.1e-11 75.1 238 26.5
Peaxi162Scf00102g01644 Petunia axillaris HOM05D003118 ORTHO05D003618 1.4e-11 74.7 291 25.8
Cfa012251 Carpinus fangiana HOM05D003118 ORTHO05D003618 1.8e-11 74.3 230 27.0
FAN08G3653 Fragaria x ananassa HOM05D003118 ORTHO05D003618 1.8e-11 74.3 244 25.0
Lalb_Chr09g0320801 Lupinus albus HOM05D003118 ORTHO05D003618 1.8e-11 74.3 398 20.1
Prupe.5G107000 Prunus persica HOM05D003118 ORTHO05D003618 1.8e-11 74.3 384 21.1
SalBow8G1076 Salvia bowleyana HOM05D003118 ORTHO05D003618 2.4e-11 73.9 270 23.0
AUR62010758 Chenopodium quinoa HOM05D003118 ORTHO05D003618 3.1e-11 73.6 237 25.3
FAN04G2035 Fragaria x ananassa HOM05D003118 ORTHO05D003618 3.1e-11 73.6 233 25.3
FAN04G2118 Fragaria x ananassa HOM05D003118 ORTHO05D003618 3.1e-11 73.6 233 25.3
MD06G1091800 Malus domestica HOM05D003118 ORTHO05D003618 4.0e-11 73.2 244 24.2
Psat2g183920 Pisum sativum HOM05D003118 ORTHO05D003618 4.0e-11 73.2 272 24.3
ECA236G1529 Erigeron canadensis HOM05D003118 ORTHO05D003618 5.2e-11 72.8 250 24.0
Atru.chr9.2107 Acer truncatum HOM05D003118 ORTHO05D003618 8.9e-11 72.0 242 26.0
CiPaw.11G129400 Carya illinoinensis HOM05D003118 ORTHO05D003618 8.9e-11 72.0 409 20.5
CANSAT21G1093 Cannabis sativa HOM05D003118 ORTHO05D003618 2.0e-10 70.9 305 23.0
COL.COLO4_08355 Corchorus olitorius HOM05D003118 ORTHO05D003618 2.0e-10 70.9 235 26.8
LjContig00312_ERROPOS870357g0002156 Lotus japonicus HOM05D003118 ORTHO05D003618 2.0e-10 70.9 174 27.6
PSO266G0003 Papaver somniferum HOM05D003118 ORTHO05D003618 2.0e-10 70.9 225 25.8
MD14G1112600 Malus domestica HOM05D003118 ORTHO05D003618 3.4e-10 70.1 239 24.3
Cc08_g15310 Coffea canephora HOM05D003118 ORTHO05D003618 4.4e-10 69.7 355 25.6
SHI07074 Sapria himalayana HOM05D003118 ORTHO05D003618 5.8e-10 69.3 342 21.6
SGA_v2.0_scaffold144G35901 Striga asiatica HOM05D003118 ORTHO05D003618 5.8e-10 69.3 212 25.5
ClCG01G002310 Citrullus lanatus HOM05D003118 ORTHO05D003618 9.9e-10 68.6 176 27.3
Medtr8g447390 Medicago truncatula HOM05D003118 ORTHO05D003618 1.3e-09 68.2 165 26.1
HanXRQChr13g0416081 Helianthus annuus HOM05D003118 ORTHO05D003618 6.4e-09 65.9 240 23.3
AUR62019759 Chenopodium quinoa HOM05D003118 ORTHO05D003618 1.1e-08 65.1 268 26.5
Hma1.2p1_0216F.1_g091120 Hydrangea macrophylla HOM05D003118 ORTHO05D003618 1.1e-08 65.1 245 24.9
HPP92_002884 Vanilla planifolia HOM05D003118 ORTHO05D003618 1.1e-08 65.1 308 25.0
ECA246G2781 Erigeron canadensis HOM05D003118 ORTHO05D003618 1.9e-08 64.3 250 24.8
Ah.12g052020 Amaranthus hybridus HOM05D003118 ORTHO05D003618 2.4e-08 63.9 213 27.7
HPP92_002895 Vanilla planifolia HOM05D003118 ORTHO05D003618 2.4e-08 63.9 308 24.7
ECA240G3271 Erigeron canadensis HOM05D000115 ORTHO05D003618 3.2e-08 63.5 216 24.5
DCAR_000636 Daucus carota HOM05D003118 ORTHO05D003618 4.2e-08 63.2 191 24.1
Ciclev10024541m.g Citrus clementina HOM05D003118 ORTHO05D003618 5.4e-08 62.8 393 22.9
BraA04t17109Z Brassica rapa HOM05D003118 ORTHO05D003618 7.1e-08 62.4 252 23.4
Eucgr.E00782 Eucalyptus grandis HOM05D003118 ORTHO05D003618 7.1e-08 62.4 268 23.9
BcaC08g44538 Brassica carinata HOM05D003118 ORTHO05D003618 9.3e-08 62.0 261 24.5
A07p20860 Brassica napus HOM05D003118 ORTHO05D003618 9.3e-08 62.0 261 24.5
C06p20020 Brassica napus HOM05D003118 ORTHO05D003618 9.3e-08 62.0 261 24.5
BraA07t29773Z Brassica rapa HOM05D003118 ORTHO05D003618 9.3e-08 62.0 261 24.5
BcaB02g07884 Brassica carinata HOM05D003118 ORTHO05D003618 2.1e-07 60.8 269 23.8
HanXRQChr17g0533861 Helianthus annuus HOM05D003118 ORTHO05D003618 2.1e-07 60.8 250 24.4
BcaB06g27629 Brassica carinata HOM05D003118 ORTHO05D003618 3.5e-07 60.1 236 22.9
PGR042G1679 Punica granatum HOM05D003118 ORTHO05D003618 3.5e-07 60.1 299 23.4
HanXRQChr06g0166221 Helianthus annuus HOM05D003118 ORTHO05D003618 6.0e-07 59.3 229 24.5
THA.LOC104809363 Tarenaya hassleriana HOM05D003118 ORTHO05D003618 6.0e-07 59.3 187 28.3
Aa31LG9G490 Aethionema arabicum HOM05D003118 ORTHO05D003618 7.8e-07 58.9 255 23.9
A04p14690 Brassica napus HOM05D003118 ORTHO05D003618 7.8e-07 58.9 132 28.0
Thhalv10027658m.g Eutrema salsugineum HOM05D003118 ORTHO05D003618 7.8e-07 58.9 145 27.6
HPP92_000528 Vanilla planifolia HOM05D003118 ORTHO05D003618 7.8e-07 58.9 248 22.2
FAN18G3666 Fragaria x ananassa HOM05D003118 ORTHO05D003618 1.3e-06 58.2 105 32.4
Cpa.g.sc201.12 Carica papaya HOM05D003118 ORTHO05D003618 1.7e-06 57.8 57 43.9
Lsat_1_v5_gn_3_11501 Lactuca sativa HOM05D003118 ORTHO05D003618 2.3e-06 57.4 263 22.8
Sp7g00460 Schrenkiella parvula HOM05D003118 ORTHO05D003618 2.3e-06 57.4 130 27.7
Hund14263 Selenicereus undatus HOM05D003118 ORTHO05D003618 2.3e-06 57.4 139 32.4
TPR.G24280 Trifolium pratense HOM05D003118 ORTHO05D003618 2.3e-06 57.4 267 20.6
BcaC02g08950 Brassica carinata HOM05D003118 ORTHO05D003618 3.9e-06 56.6 132 28.0
C04p48560 Brassica napus HOM05D003118 ORTHO05D003618 3.9e-06 56.6 132 28.0
BolC4t26449H Brassica oleracea HOM05D003118 ORTHO05D003618 3.9e-06 56.6 132 28.0
HanXRQChr11g0344401 Helianthus annuus HOM05D003118 ORTHO05D003618 3.9e-06 56.6 69 42.0


User provided reference genes

Program Settings