Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 9.6e-303 1042.7 540 100.0
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 8.7e-296 1019.6 540 98.3
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.1e-295 1019.2 540 98.1
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 5.7e-271 937.2 541 87.1
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 6.7e-264 913.7 540 86.5
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 8.2e-262 906.7 540 86.1
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 2.8e-246 855.1 512 87.1
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 6.9e-208 727.6 541 68.8
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 2.1e-204 716.1 540 67.2
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 3.9e-203 711.8 541 67.7
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 3.9e-203 711.8 541 67.7
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 5.1e-203 711.4 539 66.6
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 4.3e-202 708.4 540 66.1
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 4.8e-201 704.9 539 67.0
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 5.3e-200 701.4 539 66.0
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.5e-199 699.9 539 66.0
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 1.7e-198 696.4 539 66.0
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 1.7e-198 696.4 547 65.6
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 2.2e-198 696.0 540 65.7
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 8.4e-198 694.1 547 65.4
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 1.0e-195 687.2 541 66.9
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 8.7e-195 684.1 539 63.6
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 1.9e-194 682.9 539 64.2
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 6.2e-193 677.9 541 64.9
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 2.4e-192 676.0 537 65.2
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 4.0e-192 675.2 540 63.1
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 1.3e-187 660.2 540 64.1
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 5.6e-186 654.8 541 63.2
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 9.6e-186 654.1 540 62.8
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.3e-185 653.7 539 63.8
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 4.8e-185 651.7 540 63.7
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 1.1e-184 650.6 528 62.9
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 1.4e-184 650.2 537 64.1
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 1.8e-184 649.8 540 62.8
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 1.8e-184 649.8 539 62.9
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 3.1e-184 649.0 543 62.6
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 6.9e-184 647.9 538 63.8
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 1.5e-183 646.7 540 63.5
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 1.5e-183 646.7 543 62.1
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 3.4e-183 645.6 537 61.5
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 1.0e-182 644.0 536 62.1
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.0e-182 644.0 540 63.5
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 4.9e-182 641.7 539 61.6
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 5.5e-181 638.3 501 64.1
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 9.3e-181 637.5 531 60.6
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 3.5e-180 635.6 540 60.9
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 3.5e-180 635.6 500 63.6
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 4.6e-180 635.2 501 63.3
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 1.0e-179 634.0 532 62.2
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 2.3e-179 632.9 541 60.6
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 3.0e-179 632.5 537 60.3
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 3.9e-179 632.1 503 63.8
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 1.9e-178 629.8 541 59.1
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 7.4e-178 627.9 526 62.9
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 7.4e-178 627.9 543 60.0
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 4.8e-177 625.2 538 60.2
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 8.2e-177 624.4 538 59.7
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 8.2e-177 624.4 541 59.5
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 8.2e-177 624.4 543 59.5
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 1.2e-175 620.5 541 59.5
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 2.0e-175 619.8 546 59.0
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 7.6e-175 617.8 538 59.1
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 2.2e-174 616.3 535 60.9
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 3.8e-174 615.5 542 59.6
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 4.2e-173 612.1 531 60.1
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 6.7e-171 604.7 545 59.3
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 1.1e-170 604.0 545 58.9
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 3.7e-169 599.0 542 57.6
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 9.1e-168 594.3 538 59.3
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 1.5e-167 593.6 548 55.8
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 2.6e-167 592.8 529 59.2
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.0e-166 590.9 501 60.1
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.3e-166 590.5 539 57.1
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.2e-166 589.7 501 59.9
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.8e-166 589.0 501 60.1
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 1.4e-165 587.0 548 57.1
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.4e-165 587.0 501 59.7
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.2e-165 585.5 501 59.9
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 2.7e-164 582.8 543 56.2
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 7.9e-164 581.3 542 56.1
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 3.9e-163 578.9 536 55.6
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 3.9e-163 578.9 536 56.9
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 6.7e-163 578.2 402 71.4
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 1.1e-162 577.4 543 55.6
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 2.6e-162 576.2 543 55.8
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 4.4e-162 575.5 545 55.6
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 2.2e-161 573.2 538 56.7
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 4.8e-161 572.0 542 56.6
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 6.3e-161 571.6 545 55.4
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 8.2e-161 571.2 545 55.2
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.2e-159 567.4 502 58.2
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 2.2e-158 563.1 541 54.3
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 3.8e-158 562.4 552 53.4
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 2.5e-157 559.7 548 54.0
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 1.6e-156 557.0 543 54.5
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 4.7e-156 555.4 534 55.6
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 1.5e-154 550.4 528 54.5
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 6.5e-150 535.0 550 53.6
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.1e-149 534.3 550 53.6
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 1.1e-149 534.3 569 52.7
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 9.8e-138 494.6 415 60.2
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 2.1e-132 476.9 410 59.0
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 1.7e-126 457.2 409 57.2
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 4.3e-125 452.6 554 46.9
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 2.8e-124 449.9 544 46.9
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 3.5e-119 433.0 540 47.4
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 1.0e-118 431.4 576 43.4
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 4.1e-112 409.5 496 48.0
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 4.7e-108 396.0 356 57.3
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 4.9e-105 386.0 465 46.9
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 4.1e-104 382.9 318 62.3
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 4.3e-101 372.9 350 55.1
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 4.7e-100 369.4 416 50.7
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 2.4e-99 367.1 528 39.2
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 2.5e-93 347.1 505 38.6
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 1.7e-89 334.3 516 38.6
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.1e-85 321.6 315 55.9
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 1.5e-85 321.2 416 45.7
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.6e-84 317.8 265 61.1
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 3.1e-83 313.5 486 37.4
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 6.0e-79 299.3 499 39.3
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 1.8e-78 297.7 499 39.3
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 9.6e-77 292.0 344 49.4
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 4.6e-63 246.5 264 52.7
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.3e-60 238.4 190 62.1
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.4e-58 230.3 199 62.3
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.7e-57 228.0 195 63.1
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 8.2e-36 156.0 109 74.3
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 2.4e-35 154.5 188 48.4
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 3.8e-33 147.1 111 64.9
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 2.0e-29 134.8 111 61.3
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 9.7e-29 132.5 454 29.5
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 1.7e-28 131.7 517 27.9
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 3.7e-28 130.6 165 49.7
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 3.5e-26 124.0 85 65.9
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.0e-25 122.5 103 59.2
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 2.9e-25 120.9 268 29.1
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 4.2e-24 117.1 106 55.7
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.4e-21 107.5 102 53.9
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 5.7e-21 106.7 95 56.8
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 1.4e-19 102.1 88 63.6
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 9.1e-19 99.4 501 23.6
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 1.7e-17 95.1 88 59.1
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 6.6e-17 93.2 171 35.1
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 4.7e-15 87.0 95 44.2
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 2.7e-10 71.2 571 22.4
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 5.9e-10 70.1 85 47.1
SGA_v2.0_scaffold2881G54235 Striga asiatica HOM05D001925 ORTHO05D005701 2.5e-08 64.7 49 65.3
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 4.3e-08 63.9 77 46.8
FAN22G1210 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.1e-07 60.1 46 63.0


User provided reference genes

Program Settings