Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 0.0e+00 1308.1 643 100.0
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 0.0e+00 1259.2 643 95.8
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 0.0e+00 1234.9 671 91.5
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 0.0e+00 1216.1 643 92.5
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 0.0e+00 1201.4 643 90.7
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 0.0e+00 1199.9 643 90.2
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 0.0e+00 1174.1 665 87.5
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 6.3e-269 930.6 638 72.1
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 7.0e-268 927.2 649 70.0
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 2.0e-267 925.6 657 70.0
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 2.3e-266 922.2 634 70.2
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 8.0e-264 913.7 643 69.2
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 1.2e-259 899.8 643 68.4
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 1.2e-259 899.8 641 69.1
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 5.6e-257 891.0 642 67.0
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 2.1e-256 889.0 644 68.2
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 6.2e-256 887.5 660 67.1
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 6.2e-256 887.5 660 67.1
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 6.2e-256 887.5 650 68.0
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 8.9e-255 883.6 649 66.4
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 2.9e-253 878.6 633 68.6
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 1.9e-252 875.9 639 67.0
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 4.1e-252 874.8 638 68.0
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 2.7e-251 872.1 655 66.3
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 3.5e-251 871.7 637 67.5
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 4.6e-251 871.3 639 67.4
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 4.6e-251 871.3 642 65.7
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 3.0e-250 868.6 636 66.5
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 3.9e-250 868.2 635 67.7
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.9e-249 865.9 636 66.0
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 7.3e-249 864.0 631 67.7
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 9.5e-249 863.6 644 65.4
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 1.2e-248 863.2 637 66.6
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 4.7e-248 861.3 651 65.1
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 5.2e-247 857.8 638 66.1
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 2.6e-246 855.5 635 66.8
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 2.6e-246 855.5 638 65.8
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 3.4e-246 855.1 639 65.4
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 5.8e-246 854.4 640 66.1
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.7e-245 852.8 663 63.7
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 1.9e-244 849.4 641 65.4
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 3.2e-244 848.6 674 62.5
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 7.8e-243 844.0 639 66.4
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 1.0e-242 843.6 648 63.4
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 2.3e-242 842.4 633 66.7
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 2.3e-242 842.4 644 64.8
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 5.6e-241 837.8 656 63.6
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 1.6e-240 836.3 642 65.7
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 2.1e-240 835.9 656 63.4
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 2.8e-240 835.5 637 65.9
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 6.2e-240 834.3 641 65.5
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 2.4e-239 832.4 637 64.4
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 6.8e-239 830.9 646 65.2
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 5.8e-238 827.8 606 66.5
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 4.9e-237 824.7 652 62.9
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 3.2e-236 822.0 638 63.5
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 4.6e-235 818.1 645 62.2
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 3.0e-234 815.5 679 62.0
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 2.8e-232 808.9 640 63.8
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 8.1e-232 807.4 646 65.0
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 4.0e-231 805.1 636 63.1
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 2.0e-230 802.7 634 63.1
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 3.4e-230 802.0 646 64.6
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 1.3e-229 800.0 639 61.7
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 1.3e-229 800.0 657 61.2
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 1.1e-228 797.0 637 62.5
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 1.4e-228 796.6 647 61.8
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 1.9e-228 796.2 643 62.1
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 7.1e-228 794.3 635 62.4
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 7.1e-228 794.3 643 62.2
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 1.1e-225 786.9 635 62.0
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 4.3e-225 785.0 637 61.9
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 7.3e-225 784.3 634 62.5
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 1.6e-224 783.1 644 60.4
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 8.1e-224 780.8 654 61.2
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 3.1e-223 778.9 640 61.7
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 3.1e-223 778.9 631 61.8
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 3.1e-223 778.9 633 61.9
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 2.9e-221 772.3 644 60.1
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 1.1e-220 770.4 642 62.5
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 1.9e-220 769.6 639 60.7
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 2.1e-219 766.1 641 61.3
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 7.9e-219 764.2 581 64.7
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 5.6e-217 758.1 606 63.2
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 3.0e-210 735.7 634 57.9
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 3.7e-208 728.8 632 59.7
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 1.1e-204 717.2 490 72.0
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 4.1e-199 698.7 533 64.5
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 7.2e-196 688.0 640 55.6
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 2.5e-193 679.5 454 71.4
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 2.7e-179 632.9 622 52.3
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 4.0e-178 629.0 625 53.8
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 4.1e-175 619.0 634 51.4
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 5.0e-157 558.9 504 56.3
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 5.2e-154 548.9 604 49.0
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 1.4e-151 540.8 427 63.0
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 5.2e-146 522.3 349 71.1
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 1.5e-132 477.6 328 69.8
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 3.3e-132 476.5 331 69.8
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 6.4e-128 462.2 467 50.7
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 1.2e-102 378.3 412 51.5
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 5.3e-74 283.1 266 55.3
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 3.7e-67 260.4 201 65.2
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 1.3e-64 251.9 186 63.4
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 1.1e-63 248.8 175 65.1
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 3.5e-49 200.7 158 60.1
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 4.5e-49 200.3 179 58.1
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 6.5e-48 196.4 120 82.5
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 2.5e-47 194.5 172 55.2
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 2.7e-46 191.0 122 73.8
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 1.2e-44 185.7 190 52.6
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 4.9e-35 153.7 180 45.0
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 8.6e-32 142.9 111 62.2
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 7.3e-31 139.8 74 83.8
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 1.4e-26 125.6 64 87.5
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 1.4e-21 109.0 82 62.2


User provided reference genes

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