Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400000037 Solanum tuberosum HOM05D003351 ORTHO05D003806 1.9e-39 165.2 77 100.0
Solyc01g094550.3 Solanum lycopersicum HOM05D003351 ORTHO05D003806 4.8e-38 160.6 77 96.1
Sopen01g038360 Solanum pennellii HOM05D003351 ORTHO05D003806 4.8e-38 160.6 77 96.1
Peaxi162Scf00020g00237 Petunia axillaris HOM05D003351 ORTHO05D003806 9.6e-31 136.3 75 85.3
PGSC0003DMG400000166 Solanum tuberosum HOM05D003351 ORTHO05D003806 1.6e-30 135.6 76 80.3
Nitab4.5_0005277g0030 Nicotiana tabacum HOM05D003351 ORTHO05D003806 8.1e-30 133.3 75 82.7
Sopen01g038340 Solanum pennellii HOM05D003351 ORTHO05D003806 1.4e-29 132.5 76 78.9
Solyc01g094530.4 Solanum lycopersicum HOM05D003351 ORTHO05D003806 4.0e-29 131.0 76 77.6
Nitab4.5_0008002g0030 Nicotiana tabacum HOM05D003351 ORTHO05D003806 2.6e-28 128.3 75 80.0
CAN.G78.58 Capsicum annuum HOM05D003351 ORTHO05D003806 1.0e-27 126.3 72 80.6
Lsat_1_v5_gn_7_4420 Lactuca sativa HOM05D003351 ORTHO05D003806 2.9e-27 124.8 70 78.6
CAN.G78.57 Capsicum annuum HOM05D003351 ORTHO05D003806 6.5e-27 123.6 75 74.7
MELO3C006113.2 Cucumis melo HOM05D003351 ORTHO05D003806 3.2e-26 121.3 66 80.3
CsaV3_3G008950 Cucumis sativus L. HOM05D003351 ORTHO05D003806 3.2e-26 121.3 73 75.3
ECA236G4888 Erigeron canadensis HOM05D003351 ORTHO05D003806 5.5e-26 120.6 67 79.1
HanXRQChr06g0170081 Helianthus annuus HOM05D003351 ORTHO05D003806 7.1e-26 120.2 70 75.7
CANSAT56G4221 Cannabis sativa HOM05D003351 ORTHO05D003806 2.1e-25 118.6 64 84.4
Sed0024794 Sechium edule HOM05D003351 ORTHO05D003806 2.1e-25 118.6 66 77.3
Migut.N01442 Erythranthe guttata HOM05D003351 ORTHO05D003806 3.5e-25 117.9 66 81.8
CiPaw.01G060600 Carya illinoinensis HOM05D003351 ORTHO05D003806 4.6e-25 117.5 66 78.8
Rhsim13G0014400 Rhododendron simsii HOM05D003351 ORTHO05D003806 6.0e-25 117.1 66 80.3
GSVIVG01026913001 Vitis vinifera HOM05D003351 ORTHO05D003806 6.0e-25 117.1 65 80.0
Dinv43809 Davidia involucrata HOM05D003351 ORTHO05D003806 1.0e-24 116.3 66 80.3
DCAR_015970 Daucus carota HOM05D003351 ORTHO05D003806 1.3e-24 115.9 66 75.8
Actinidia33422 Actinidia chinensis HOM05D003351 ORTHO05D003806 1.8e-24 115.5 65 78.5
RcHm_v2.0_Chr1g0355121 Rosa chinensis HOM05D003351 ORTHO05D003806 2.3e-24 115.2 76 71.1
Cc02_g37920 Coffea canephora HOM05D003351 ORTHO05D003806 3.9e-24 114.4 69 72.5
Sed0019127 Sechium edule HOM05D003351 ORTHO05D003806 5.1e-24 114.0 66 74.2
PGSC0003DMG400000200 Solanum tuberosum HOM05D003351 ORTHO05D003806 5.1e-24 114.0 66 77.3
Haze_15492 Corylus avellana HOM05D003351 ORTHO05D003806 6.7e-24 113.6 64 79.7
SGA_v2.0_scaffold43G16419 Striga asiatica HOM05D003351 ORTHO05D003806 6.7e-24 113.6 67 76.1
CDE11G0862 Ceratophyllum demersum HOM05D003351 ORTHO05D003806 1.9e-23 112.1 67 68.7
FvH4_7g14192 Fragaria vesca HOM05D003351 ORTHO05D003806 1.9e-23 112.1 76 69.7
FAN06G3044 Fragaria x ananassa HOM05D003351 ORTHO05D003806 1.9e-23 112.1 76 69.7
FAN06G4684 Fragaria x ananassa HOM05D003351 ORTHO05D003806 1.9e-23 112.1 76 69.7
HanXRQChr04g0121601 Helianthus annuus HOM05D003351 ORTHO05D003806 1.9e-23 112.1 66 71.2
Cpa.g.sc18.250 Carica papaya HOM05D003351 ORTHO05D003806 2.5e-23 111.7 66 71.2
Lj1g0000541 Lotus japonicus HOM05D003351 ORTHO05D003806 3.3e-23 111.3 77 68.8
ClCG05G001560 Citrullus lanatus HOM05D003351 ORTHO05D003806 4.3e-23 110.9 70 74.3
CSS0020727 Camellia sinensis var. sinensis HOM05D003351 ORTHO05D003806 5.7e-23 110.5 64 73.4
DCAR_025188 Daucus carota HOM05D003351 ORTHO05D003806 7.4e-23 110.2 66 71.2
SalBow5G0930 Salvia bowleyana HOM05D003351 ORTHO05D003806 7.4e-23 110.2 70 70.0
SalBow5G3927 Salvia bowleyana HOM05D003351 ORTHO05D003806 7.4e-23 110.2 70 70.0
Carub.0001s0050 Capsella rubella HOM05D003351 ORTHO05D003806 9.6e-23 109.8 66 71.2
COL.COLO4_12706 Corchorus olitorius HOM05D003351 ORTHO05D003806 9.6e-23 109.8 66 75.8
Thhalv10007689m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 9.6e-23 109.8 66 72.7
Medtr7g077400 Medicago truncatula HOM05D003351 ORTHO05D003806 9.6e-23 109.8 64 75.0
Oeu037304.1 Olea europaea HOM05D003351 ORTHO05D003806 1.3e-22 109.4 66 72.7
Oeu037305.1 Olea europaea HOM05D003351 ORTHO05D003806 1.3e-22 109.4 66 72.7
THA.LOC104814102 Tarenaya hassleriana HOM05D003351 ORTHO05D003806 1.3e-22 109.4 66 71.2
TWI59G0062 Tripterygium wilfordii HOM05D003351 ORTHO05D003806 1.3e-22 109.4 63 77.8
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 1.6e-22 109.0 66 71.2
BolC5t28825H Brassica oleracea HOM05D003351 ORTHO05D003806 1.6e-22 109.0 66 71.2
Duzib133G0362 Durio zibethinus HOM05D003351 ORTHO05D003806 1.6e-22 109.0 66 75.8
Gohir.A11G088400 Gossypium hirsutum HOM05D003351 ORTHO05D003806 1.6e-22 109.0 66 75.8
Gohir.D11G092700 Gossypium hirsutum HOM05D003351 ORTHO05D003806 1.6e-22 109.0 66 75.8
Gorai.007G099000 Gossypium raimondii HOM05D003351 ORTHO05D003806 1.6e-22 109.0 66 75.8
Thecc.01G360000 Theobroma cacao HOM05D003351 ORTHO05D003806 1.6e-22 109.0 68 75.0
MSTRG.4857 Avicennia marina HOM05D003351 ORTHO05D003806 2.1e-22 108.6 64 76.6
AT1G01710 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 2.8e-22 108.2 66 69.7
MD01G1058600 Malus domestica HOM05D003351 ORTHO05D003806 2.8e-22 108.2 71 67.6
Manes.05G035200 Manihot esculenta HOM05D003351 ORTHO05D003806 2.8e-22 108.2 65 75.4
Phvul.008G065700 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 2.8e-22 108.2 63 71.4
Duzib138G1725 Durio zibethinus HOM05D003351 ORTHO05D003806 4.8e-22 107.5 66 74.2
Potri.014G083300 Populus trichocarpa HOM05D003351 ORTHO05D003806 4.8e-22 107.5 63 73.0
AL1G10650 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 6.3e-22 107.1 66 68.2
Glyma.18G232000 Glycine max HOM05D003351 ORTHO05D003806 6.3e-22 107.1 63 74.6
Sp1g00600 Schrenkiella parvula HOM05D003351 ORTHO05D003806 6.3e-22 107.1 66 69.7
Sabra14G0060600 Salix brachista HOM05D003351 ORTHO05D003806 8.2e-22 106.7 63 73.0
Lalb_Chr17g0339681 Lupinus albus HOM05D003351 ORTHO05D003806 1.1e-21 106.3 63 73.0
Nn6g33439 Nelumbo nucifera HOM05D003351 ORTHO05D003806 1.1e-21 106.3 66 68.2
AT4G00520 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 1.4e-21 105.9 77 64.9
Psat0s3577g0040 Pisum sativum HOM05D003351 ORTHO05D003806 1.4e-21 105.9 63 73.0
Aa31LG1G11070 Aethionema arabicum HOM05D003351 ORTHO05D003806 1.8e-21 105.5 66 68.2
Ciclev10020242m.g Citrus clementina HOM05D003351 ORTHO05D003806 1.8e-21 105.5 69 69.6
Atru.chr5.459 Acer truncatum HOM05D003351 ORTHO05D003806 2.4e-21 105.1 63 71.4
Lalb_Chr19g0126951 Lupinus albus HOM05D003351 ORTHO05D003806 2.4e-21 105.1 63 71.4
Psat0s3832g0080 Pisum sativum HOM05D003351 ORTHO05D003806 2.4e-21 105.1 61 70.5
TPR.G37800 Trifolium pratense HOM05D003351 ORTHO05D003806 2.4e-21 105.1 64 70.3
unitig_22.g6719 Utricularia gibba HOM05D003351 ORTHO05D003806 2.4e-21 105.1 63 73.0
arahy.Tifrunner.gnm1.ann1.M409IX Arachis hypogaea HOM05D000404 ORTHO05D002003 3.1e-21 104.8 63 71.4
BraA10t42310Z Brassica rapa HOM05D003351 ORTHO05D003806 3.1e-21 104.8 66 68.2
AUR62004348 Chenopodium quinoa HOM05D003351 ORTHO05D003806 3.1e-21 104.8 66 68.2
arahy.Tifrunner.gnm1.ann1.UANN5Y Arachis hypogaea HOM05D003351 ORTHO05D003806 4.1e-21 104.4 63 71.4
Ca_07910_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 4.1e-21 104.4 63 71.4
Glyma.03G009800 Glycine max HOM05D003351 ORTHO05D003806 4.1e-21 104.4 63 73.0
QL08p048969 Quercus lobata HOM05D003351 ORTHO05D003806 5.3e-21 104.0 64 75.0
Carub.0006s3675 Capsella rubella HOM05D003351 ORTHO05D003806 6.9e-21 103.6 77 62.3
CARHR000630 Cardamine hirsuta HOM05D003351 ORTHO05D003806 6.9e-21 103.6 66 66.7
Os04g0558400 Oryza sativa ssp. japonica HOM05D003351 ORTHO05D003806 6.9e-21 103.6 66 63.6
QL08p048991 Quercus lobata HOM05D003351 ORTHO05D003806 9.0e-21 103.2 61 77.0
Aa31LG5G470 Aethionema arabicum HOM05D003351 ORTHO05D003806 1.2e-20 102.8 74 64.9
Aqoxy7G00326 Aquilegia oxysepala HOM05D003351 ORTHO05D003806 1.2e-20 102.8 66 65.2
AUR62022554 Chenopodium quinoa HOM05D003351 ORTHO05D003806 1.2e-20 102.8 66 66.7
VMungo0331G1844 Vigna mungo HOM05D003351 ORTHO05D003806 1.2e-20 102.8 63 73.0
Ca_23637_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 1.5e-20 102.4 63 66.7
Glyma.07G071300 Glycine max HOM05D003351 ORTHO05D003806 1.5e-20 102.4 63 71.4
Medtr8g030920 Medicago truncatula HOM05D003351 ORTHO05D003806 2.0e-20 102.1 77 58.4
FAN10G4309 Fragaria x ananassa HOM05D003351 ORTHO05D003806 2.6e-20 101.7 76 67.1
Psat0s3577g0160 Pisum sativum HOM05D003351 ORTHO05D003806 2.6e-20 101.7 63 68.3
Lj7A514T28 Lonicera japonica HOM05D003351 ORTHO05D003806 3.4e-20 101.3 93 53.8
Sc23g0002940 Simmondsia chinensis HOM05D003351 ORTHO05D003806 3.4e-20 101.3 66 66.7
Ah.05g180660 Amaranthus hybridus HOM05D003351 ORTHO05D003806 5.9e-20 100.5 66 63.6
Eucgr.E00141 Eucalyptus grandis HOM05D003351 ORTHO05D003806 5.9e-20 100.5 66 66.7
HanXRQChr06g0170071 Helianthus annuus HOM05D003351 ORTHO05D003806 5.9e-20 100.5 64 68.8
TPR.G15034 Trifolium pratense HOM05D003351 ORTHO05D003806 5.9e-20 100.5 65 64.6
EL10Ac1g00424 Beta vulgaris HOM05D003351 ORTHO05D003806 7.6e-20 100.1 67 62.7
Lalb_Chr19g0126941 Lupinus albus HOM05D003351 ORTHO05D003806 7.6e-20 100.1 63 68.3
Phvul.010G098200 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 7.6e-20 100.1 62 71.0
BcaB01g02157 Brassica carinata HOM05D003351 ORTHO05D003806 1.0e-19 99.8 65 61.5
BcaC01g06871 Brassica carinata HOM05D003351 ORTHO05D003806 1.0e-19 99.8 65 61.5
BcaNung05354 Brassica carinata HOM05D003351 ORTHO05D003806 1.0e-19 99.8 65 61.5
A03p32150 Brassica napus HOM05D003351 ORTHO05D003806 1.0e-19 99.8 65 61.5
C03p39170 Brassica napus HOM05D003351 ORTHO05D003806 1.0e-19 99.8 65 61.5
BolC3t16188H Brassica oleracea HOM05D003351 ORTHO05D003806 1.0e-19 99.8 65 61.5
BraA03t12385Z Brassica rapa HOM05D003351 ORTHO05D003806 1.0e-19 99.8 65 61.5
MD01G1058300 Malus domestica HOM05D003351 ORTHO05D003806 1.0e-19 99.8 64 68.8
Aa31LG5G460 Aethionema arabicum HOM05D003351 ORTHO05D003806 1.3e-19 99.4 77 59.7
ATR0680G356 Amborella trichopoda HOM05D003351 ORTHO05D003806 1.3e-19 99.4 67 61.2
PSO782G5283 Papaver somniferum HOM05D003351 ORTHO05D003806 1.3e-19 99.4 66 63.6
Glyma.18G232100 Glycine max HOM05D003351 ORTHO05D003806 1.7e-19 99.0 57 75.4
Sp6g00550 Schrenkiella parvula HOM05D003351 ORTHO05D003806 1.7e-19 99.0 65 64.6
Psat4g154520 Pisum sativum HOM05D003351 ORTHO05D003806 2.2e-19 98.6 63 63.5
PSO478G5134 Papaver somniferum HOM05D003351 ORTHO05D003806 3.8e-19 97.8 66 62.1
DCAR_006927 Daucus carota HOM05D003351 ORTHO05D003806 6.5e-19 97.1 63 63.5
PSO478G2412 Papaver somniferum HOM05D003351 ORTHO05D003806 1.1e-18 96.3 74 58.1
HPP92_008506 Vanilla planifolia HOM05D003351 ORTHO05D003806 1.1e-18 96.3 76 57.9
Psat0s3832g0040 Pisum sativum HOM05D003351 ORTHO05D003806 2.5e-18 95.1 57 71.9
PSO782G0254 Papaver somniferum HOM05D003351 ORTHO05D003806 4.2e-18 94.4 69 58.0
Lj9A583T62 Lonicera japonica HOM05D003351 ORTHO05D003806 1.2e-17 92.8 52 73.1
PSO478G3804 Papaver somniferum HOM05D003351 ORTHO05D003806 1.2e-17 92.8 69 56.5
CiPaw.01G060400 Carya illinoinensis HOM05D003351 ORTHO05D003806 2.1e-17 92.0 56 73.2
BcaC03g16040 Brassica carinata HOM05D003351 ORTHO05D003806 2.7e-17 91.7 63 63.5
C02p38000 Brassica napus HOM05D003351 ORTHO05D003806 2.7e-17 91.7 63 63.5
BolC2t09816H Brassica oleracea HOM05D003351 ORTHO05D003806 2.7e-17 91.7 63 63.5
PSO063G6511 Papaver somniferum HOM05D003351 ORTHO05D003806 2.7e-17 91.7 69 55.1
BcaB01g02197 Brassica carinata HOM05D003351 ORTHO05D003806 3.6e-17 91.3 63 63.5
Glyma.09G260200 Glycine max HOM05D003351 ORTHO05D003806 3.6e-17 91.3 52 76.9
PSO782G2636 Papaver somniferum HOM05D003351 ORTHO05D003806 6.1e-17 90.5 69 53.6
A02p24120 Brassica napus HOM05D003351 ORTHO05D003806 7.9e-17 90.1 57 68.4
BraA02t07405Z Brassica rapa HOM05D003351 ORTHO05D003806 7.9e-17 90.1 57 68.4
Pp3c14_7450 Physcomitrium patens HOM05D003351 ORTHO05D003806 7.9e-17 90.1 61 62.3
SEGI_22600 Sequoiadendron giganteum HOM05D003351 ORTHO05D003806 1.8e-16 89.0 68 58.8
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 2.3e-16 88.6 52 69.2
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 2.3e-16 88.6 52 69.2
HanXRQChr04g0121591 Helianthus annuus HOM05D003351 ORTHO05D003806 2.3e-16 88.6 57 64.9
SMO147G0381 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 3.9e-16 87.8 61 57.4
Lsat_1_v5_gn_7_4460 Lactuca sativa HOM05D003351 ORTHO05D003806 5.1e-16 87.4 53 69.8
QL05p057193 Quercus lobata HOM05D003351 ORTHO05D003806 8.7e-16 86.7 61 67.2
Hund27283 Selenicereus undatus HOM05D003351 ORTHO05D003806 8.7e-16 86.7 65 58.5
Zm00001eb429310 Zea mays HOM05D003351 ORTHO05D003806 2.5e-15 85.1 66 56.1
AL6G52960 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 3.3e-15 84.7 53 66.0
Mapoly0016s0008 Marchantia polymorpha HOM05D003351 ORTHO05D003806 5.3e-13 77.4 57 54.4
AagrBONN_evm.TU.Sc2ySwM_228.1010 Anthoceros agrestis HOM05D003351 ORTHO05D003806 1.5e-12 75.9 57 52.6
AagrBONN_evm.TU.Sc2ySwM_228.998 Anthoceros agrestis HOM05D003351 ORTHO05D003806 1.3e-11 72.8 53 54.7
vmacro23203 Vaccinium macrocarpon HOM05D003351 ORTHO05D003806 5.0e-11 70.9 79 49.4
Pp3c10_19190 Physcomitrium patens HOM05D003351 ORTHO05D003806 4.2e-10 67.8 56 46.4
SMO147G0196 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 4.2e-10 67.8 46 56.5
SMO273G0019 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 4.2e-10 67.8 46 56.5
PSO063G6016 Papaver somniferum HOM05D001810 ORTHO05D005662 5.5e-10 67.4 54 55.6
Pp3c12_25760 Physcomitrium patens HOM05D003351 ORTHO05D003806 7.2e-10 67.0 57 49.1
Manes.01G257800 Manihot esculenta HOM05D003351 ORTHO05D003806 3.6e-09 64.7 70 50.0
PRCOL_00006030 Prasinoderma coloniale HOM05D003351 ORTHO05D003806 2.6e-07 58.5 69 37.7
Prupe.2G169700 Prunus persica HOM05D003351 ORTHO05D003806 9.7e-07 56.6 29 72.4
Thhalv10029128m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 4.8e-06 54.3 28 71.4


User provided reference genes

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