Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400000036 Solanum tuberosum HOM05D006065 ORTHO05D007672 4.0e-73 278.1 149 100.0
Sopen01g038320 Solanum pennellii HOM05D006065 ORTHO05D007672 1.2e-64 250.0 149 92.6
CAN.G78.55 Capsicum annuum HOM05D006065 ORTHO05D007672 2.4e-54 215.7 144 81.9
Solyc01g094510.2 Solanum lycopersicum HOM05D006065 ORTHO05D007672 2.6e-48 195.7 117 93.2
Nitab4.5_0008002g0050 Nicotiana tabacum HOM05D006065 ORTHO05D007672 5.0e-44 181.4 169 68.0
Nitab4.5_0005277g0010 Nicotiana tabacum HOM05D006065 ORTHO05D007672 5.4e-38 161.4 162 62.3
Dinv43807 Davidia involucrata HOM05D006065 ORTHO05D007672 2.8e-34 149.1 153 54.9
Cc02_g37900 Coffea canephora HOM05D006065 ORTHO05D007672 4.4e-32 141.7 123 62.6
Dinv32472 Davidia involucrata HOM05D006065 ORTHO05D007672 1.7e-31 139.8 156 53.2
Peaxi162Scf00020g00240 Petunia axillaris HOM05D006065 ORTHO05D007672 1.7e-31 139.8 130 60.8
Migut.N01441 Erythranthe guttata HOM05D006065 ORTHO05D007672 1.8e-25 119.8 158 49.4
Potri.014G083100 Populus trichocarpa HOM05D006065 ORTHO05D007672 1.8e-25 119.8 129 54.3
DCAR_006926 Daucus carota HOM05D006065 ORTHO05D007672 4.0e-25 118.6 147 50.3
Actinidia10016 Actinidia chinensis HOM05D006065 ORTHO05D007672 9.0e-25 117.5 140 48.6
CiPaw.01G060100 Carya illinoinensis HOM05D006065 ORTHO05D007672 2.0e-24 116.3 137 50.4
MSTRG.4858 Avicennia marina HOM05D006065 ORTHO05D007672 3.4e-24 115.5 153 45.1
Actinidia20914 Actinidia chinensis HOM05D006065 ORTHO05D007672 4.4e-24 115.2 153 47.7
vmacro13279 Vaccinium macrocarpon HOM05D006065 ORTHO05D007672 4.4e-24 115.2 142 48.6
Sabra14G0060500 Salix brachista HOM05D006065 ORTHO05D007672 5.8e-24 114.8 127 52.8
Oeu010611.1 Olea europaea HOM05D006065 ORTHO05D007672 7.6e-24 114.4 160 44.4
COL.COLO4_12704 Corchorus olitorius HOM05D006065 ORTHO05D007672 2.2e-23 112.8 145 45.5
QL08p049008 Quercus lobata HOM05D006065 ORTHO05D007672 2.9e-23 112.5 134 50.7
RcHm_v2.0_Chr1g0355101 Rosa chinensis HOM05D006065 ORTHO05D007672 2.9e-23 112.5 139 51.8
Thecc.01G360200 Theobroma cacao HOM05D006065 ORTHO05D007672 2.9e-23 112.5 138 51.4
Atru.chr5.461 Acer truncatum HOM05D006065 ORTHO05D007672 3.8e-23 112.1 142 50.0
Hma1.2p1_0001F.1_g001420 Hydrangea macrophylla HOM05D006065 ORTHO05D007672 6.4e-23 111.3 165 41.8
Gorai.004G158400 Gossypium raimondii HOM05D006065 ORTHO05D007672 5.4e-22 108.2 133 47.4
Sc01g0003370 Simmondsia chinensis HOM05D006065 ORTHO05D007672 7.1e-22 107.8 139 43.2
Gohir.A08G131000 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.2e-21 107.1 134 47.8
Cfa003936 Carpinus fangiana HOM05D006065 ORTHO05D007672 1.6e-21 106.7 149 45.0
Gohir.D08G152500 Gossypium hirsutum HOM05D006065 ORTHO05D007672 6.0e-21 104.8 133 45.9
ClCG05G001580 Citrullus lanatus HOM05D006065 ORTHO05D007672 1.0e-20 104.0 140 45.7
Nitab4.5_0001702g0100 Nicotiana tabacum HOM05D006065 ORTHO05D007672 1.0e-20 104.0 160 50.6
Solyc05g049940.3 Solanum lycopersicum HOM05D006065 ORTHO05D007672 1.0e-20 104.0 122 56.6
PGSC0003DMG400021646 Solanum tuberosum HOM05D006065 ORTHO05D007672 1.0e-20 104.0 163 47.9
FAN01G0390 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.7e-20 103.2 131 49.6
SalBow3G2602 Salvia bowleyana HOM05D006065 ORTHO05D007672 1.7e-20 103.2 150 43.3
Sopen05g028300 Solanum pennellii HOM05D006065 ORTHO05D007672 1.7e-20 103.2 122 55.7
TAR374G1295 Trochodendron aralioides HOM05D006065 ORTHO05D007672 1.7e-20 103.2 137 44.5
FvH4_7g14190 Fragaria vesca HOM05D006065 ORTHO05D007672 2.3e-20 102.8 131 50.4
FAN06G3027 Fragaria x ananassa HOM05D006065 ORTHO05D007672 2.3e-20 102.8 137 49.6
FAN06G3847 Fragaria x ananassa HOM05D006065 ORTHO05D007672 3.0e-20 102.4 137 49.6
FAN03G2883 Fragaria x ananassa HOM05D006065 ORTHO05D007672 3.9e-20 102.1 131 48.9
Sed0025321 Sechium edule HOM05D006065 ORTHO05D007672 3.9e-20 102.1 144 45.8
Hund16927 Selenicereus undatus HOM05D006065 ORTHO05D007672 5.1e-20 101.7 138 44.9
TAR629G3005 Trochodendron aralioides HOM05D006065 ORTHO05D007672 5.1e-20 101.7 135 44.4
CANSAT56G3634 Cannabis sativa HOM05D006065 ORTHO05D007672 6.6e-20 101.3 134 47.8
Ciclev10022632m.g Citrus clementina HOM05D006065 ORTHO05D007672 6.6e-20 101.3 138 44.9
Prupe.2G168300 Prunus persica HOM05D006065 ORTHO05D007672 8.7e-20 100.9 145 46.2
CsaV3_3G008970 Cucumis sativus L. HOM05D006065 ORTHO05D007672 1.9e-19 99.8 141 44.0
FAN10G0270 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.9e-19 99.8 131 49.6
Cpa.g.sc18.247 Carica papaya HOM05D006065 ORTHO05D007672 4.3e-19 98.6 139 42.4
Duzib138G1923 Durio zibethinus HOM05D006065 ORTHO05D007672 4.3e-19 98.6 140 45.0
unitig_8.g3395 Utricularia gibba HOM05D006065 ORTHO05D007672 7.3e-19 97.8 140 45.0
Duzib133G1075 Durio zibethinus HOM05D006065 ORTHO05D007672 1.3e-18 97.1 130 45.4
Lsat_1_v5_gn_7_4500 Lactuca sativa HOM05D006065 ORTHO05D007672 1.3e-18 97.1 147 41.5
GSVIVG01018349001 Vitis vinifera HOM05D006065 ORTHO05D007672 1.3e-18 97.1 122 45.9
Haze_15490 Corylus avellana HOM05D006065 ORTHO05D007672 1.6e-18 96.7 185 37.3
Manes.05G035300 Manihot esculenta HOM05D006065 ORTHO05D007672 1.6e-18 96.7 141 44.0
Gorai.007G098900 Gossypium raimondii HOM05D006065 ORTHO05D007672 3.6e-18 95.5 134 44.8
SGA_v2.0_scaffold11G05664 Striga asiatica HOM05D006065 ORTHO05D007672 4.8e-18 95.1 144 42.4
CiPaw.02G030100 Carya illinoinensis HOM05D006065 ORTHO05D007672 6.2e-18 94.7 123 48.8
TWI59G0879 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 8.1e-18 94.4 134 44.8
MSTRG.28221 Avicennia marina HOM05D006065 ORTHO05D007672 1.1e-17 94.0 139 38.8
Aqoxy7G00322 Aquilegia oxysepala HOM05D006065 ORTHO05D007672 1.8e-17 93.2 124 42.7
Lj1g0009386 Lotus japonicus HOM05D006065 ORTHO05D007672 3.1e-17 92.4 137 43.1
Medtr7g076690 Medicago truncatula HOM05D006065 ORTHO05D007672 4.0e-17 92.0 137 42.3
Glyma.18G230000 Glycine max HOM05D006065 ORTHO05D007672 5.3e-17 91.7 144 42.4
GSVIVG01026900001 Vitis vinifera HOM05D006065 ORTHO05D007672 6.9e-17 91.3 122 44.3
Rhsim07G0016100 Rhododendron simsii HOM05D006065 ORTHO05D007672 9.0e-17 90.9 218 33.0
MBI18_g21561_MAGBIO Magnolia biondii HOM05D006065 ORTHO05D007672 1.2e-16 90.5 142 38.7
Sabra02G0126300 Salix brachista HOM05D006065 ORTHO05D007672 4.5e-16 88.6 127 44.9
THA.LOC104817023 Tarenaya hassleriana HOM05D006065 ORTHO05D007672 4.5e-16 88.6 130 40.8
HanXRQChr13g0426531 Helianthus annuus HOM05D006065 ORTHO05D007672 5.8e-16 88.2 143 41.3
Glyma.09G262200 Glycine max HOM05D006065 ORTHO05D007672 7.6e-16 87.8 138 42.8
Phvul.008G067900 Phaseolus vulgaris HOM05D006065 ORTHO05D007672 7.6e-16 87.8 138 40.6
VMungo1383G0981 Vigna mungo HOM05D006065 ORTHO05D007672 7.6e-16 87.8 135 41.5
Ca_07890_v3 Cicer arietinum L. HOM05D006065 ORTHO05D007672 2.9e-15 85.9 138 40.6
Manes.01G258100 Manihot esculenta HOM05D006065 ORTHO05D007672 6.4e-15 84.7 130 41.5
EL10Ac1g00426 Beta vulgaris HOM05D006065 ORTHO05D007672 1.1e-14 84.0 113 46.9
arahy.Tifrunner.gnm1.ann1.QD83TI Arachis hypogaea HOM05D006065 ORTHO05D007672 1.4e-14 83.6 137 43.1
Gohir.A11G088300 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.4e-14 83.6 132 40.2
Gohir.D11G092600 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.4e-14 83.6 132 40.2
SGA_v2.0_scaffold43G16421 Striga asiatica HOM05D006065 ORTHO05D007672 1.4e-14 83.6 153 39.2
Aa31LG5G450 Aethionema arabicum HOM05D006065 ORTHO05D007672 1.9e-14 83.2 138 38.4
Lalb_Chr19g0127061 Lupinus albus HOM05D006065 ORTHO05D007672 1.9e-14 83.2 146 39.7
Ah.05g180670 Amaranthus hybridus HOM05D006065 ORTHO05D007672 2.4e-14 82.8 127 42.5
Oeu020560.2 Olea europaea HOM05D006065 ORTHO05D007672 2.4e-14 82.8 204 32.4
PSO210G7571 Papaver somniferum HOM05D006065 ORTHO05D007672 2.4e-14 82.8 142 36.6
TPR.G37820 Trifolium pratense HOM05D006065 ORTHO05D007672 3.2e-14 82.4 137 38.0
TWI14G0791 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 3.2e-14 82.4 131 39.7
PSO832G3783 Papaver somniferum HOM05D006065 ORTHO05D007672 1.6e-13 80.1 142 35.9
Sed0021596 Sechium edule HOM05D006065 ORTHO05D007672 2.1e-13 79.7 138 42.8
Sp6g00560 Schrenkiella parvula HOM05D006065 ORTHO05D007672 3.5e-13 79.0 136 39.0
arahy.Tifrunner.gnm1.ann1.WJC6IK Arachis hypogaea HOM05D006065 ORTHO05D007672 7.9e-13 77.8 172 37.8
AT4G00525 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 1.0e-12 77.4 137 38.7
PGR031G0376 Punica granatum HOM05D006065 ORTHO05D007672 3.0e-12 75.9 145 36.6
Thhalv10029047m.g Eutrema salsugineum HOM05D006065 ORTHO05D007672 6.7e-12 74.7 138 34.8
Carub.0006s3674 Capsella rubella HOM05D006065 ORTHO05D007672 1.1e-11 73.9 136 36.0
Psat3g110920 Pisum sativum HOM05D006065 ORTHO05D007672 3.3e-11 72.4 135 37.8
BcaC01g06870 Brassica carinata HOM05D006065 ORTHO05D007672 8.1e-10 67.8 138 37.0
BcaNung05355 Brassica carinata HOM05D006065 ORTHO05D007672 8.1e-10 67.8 138 37.0
BolC3t16187H Brassica oleracea HOM05D006065 ORTHO05D007672 8.1e-10 67.8 138 37.0
BraA03t12384Z Brassica rapa HOM05D006065 ORTHO05D007672 8.1e-10 67.8 145 35.9
MD07G1138600 Malus domestica HOM05D006065 ORTHO05D007672 1.4e-09 67.0 117 41.9
A03p32140 Brassica napus HOM05D006065 ORTHO05D007672 3.1e-09 65.9 145 35.2
HPP92_008504 Vanilla planifolia HOM05D006065 ORTHO05D007672 4.0e-09 65.5 138 31.9
AL1G10640 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 2.6e-08 62.8 139 34.5
AL6G52950 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 4.5e-08 62.0 137 32.8
Nn1g01520 Nelumbo nucifera HOM05D006065 ORTHO05D007672 1.7e-07 60.1 129 37.2
CSS0003041 Camellia sinensis var. sinensis HOM05D006065 ORTHO05D007672 3.8e-07 58.9 183 30.1
Eucgr.D02286 Eucalyptus grandis HOM05D006065 ORTHO05D007672 1.1e-06 57.4 119 32.8
CDE06G0574 Ceratophyllum demersum HOM05D006065 ORTHO05D007672 1.4e-06 57.0 119 33.6
Os04g0558500 Oryza sativa ssp. japonica HOM05D006065 ORTHO05D007672 7.1e-06 54.7 129 30.2
Peaxi162Scf00191g01430 Petunia axillaris HOM05D006065 ORTHO05D007672 7.1e-06 54.7 109 39.4


User provided reference genes

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