Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.2e-206 723.0 368 100.0
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 8.0e-200 700.3 369 96.7
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 1.7e-189 666.0 368 91.3
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.8e-183 646.0 368 89.1
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 4.1e-172 608.2 345 89.9
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 1.3e-170 603.2 321 96.3
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.1e-140 503.8 371 74.4
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 2.6e-134 482.6 368 65.5
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 5.8e-134 481.5 371 65.0
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 2.2e-133 479.6 369 65.0
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 6.4e-133 478.0 372 65.3
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 3.2e-132 475.7 369 61.8
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 1.0e-130 470.7 370 64.1
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.8e-130 469.9 371 62.3
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 2.3e-130 469.5 368 64.7
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 3.9e-130 468.8 370 64.6
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 6.7e-130 468.0 370 61.6
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.1e-129 467.2 370 63.5
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 1.6e-128 463.4 369 62.9
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 2.1e-128 463.0 372 62.1
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 2.8e-128 462.6 369 62.1
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 8.2e-128 461.1 370 61.4
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.8e-127 459.9 369 64.8
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 2.4e-127 459.5 375 61.9
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 2.6e-126 456.1 370 61.6
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 4.5e-126 455.3 372 61.6
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 1.0e-125 454.1 369 61.2
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 1.7e-125 453.4 370 60.3
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 2.2e-125 453.0 371 61.2
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 6.5e-125 451.4 346 67.6
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 6.5e-125 451.4 368 61.4
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 1.4e-124 450.3 371 60.6
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.9e-124 449.9 373 60.6
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 3.2e-124 449.1 369 60.2
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 5.5e-124 448.4 377 60.5
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 7.1e-124 448.0 393 61.8
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 7.1e-124 448.0 372 60.5
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 1.6e-123 446.8 370 61.1
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 2.1e-123 446.4 370 59.5
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 2.7e-123 446.0 371 60.6
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 3.5e-123 445.7 368 60.3
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 6.0e-123 444.9 369 61.2
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 6.0e-123 444.9 370 59.5
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.0e-122 444.1 370 60.3
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 1.3e-122 443.7 369 61.0
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 1.3e-122 443.7 368 60.1
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 3.9e-122 442.2 370 61.1
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 5.1e-122 441.8 369 59.3
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 1.1e-121 440.7 359 61.6
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 5.7e-121 438.3 370 60.8
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 9.7e-121 437.6 370 58.9
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 3.7e-120 435.6 373 59.0
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 4.8e-120 435.3 370 59.2
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 3.1e-119 432.6 369 59.1
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.2e-118 430.6 372 58.3
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 2.6e-118 429.5 371 57.7
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 2.6e-118 429.5 414 55.1
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 3.4e-118 429.1 370 57.3
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 5.9e-118 428.3 371 58.5
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.9e-117 426.0 372 57.8
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 3.8e-117 425.6 370 58.6
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 6.5e-117 424.9 374 58.3
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 1.4e-116 423.7 369 59.9
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 4.2e-116 422.2 345 61.4
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 4.6e-115 418.7 372 57.0
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 5.1e-114 415.2 369 57.2
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 6.7e-114 414.8 369 57.2
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 1.1e-113 414.1 377 55.7
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 3.3e-113 412.5 369 58.0
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 4.3e-113 412.1 371 59.6
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.7e-112 410.2 369 56.6
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.7e-112 410.2 369 56.6
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 3.7e-112 409.1 369 55.6
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 4.8e-112 408.7 345 61.7
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 4.8e-112 408.7 398 56.0
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 2.4e-111 406.4 378 57.9
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 4.1e-111 405.6 378 57.9
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 5.3e-111 405.2 372 56.5
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 5.3e-111 405.2 383 57.4
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 5.3e-111 405.2 352 59.1
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 3.4e-110 402.5 381 57.0
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 4.5e-110 402.1 374 57.2
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 5.9e-110 401.7 381 57.0
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 7.7e-110 401.4 373 57.4
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 1.0e-109 401.0 364 57.1
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 1.3e-109 400.6 380 55.8
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 5.0e-109 398.7 382 54.7
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 5.0e-109 398.7 383 56.1
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 6.5e-109 398.3 378 57.1
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 6.5e-109 398.3 377 56.5
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 5.5e-108 395.2 387 55.6
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 9.4e-108 394.4 374 56.4
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 1.2e-107 394.0 370 54.9
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 2.7e-107 392.9 380 57.1
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 2.7e-107 392.9 358 55.9
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 3.6e-107 392.5 386 55.2
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 3.6e-107 392.5 340 59.1
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 4.7e-107 392.1 350 58.9
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.0e-106 391.0 387 53.0
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 6.7e-106 388.3 321 61.4
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 2.0e-105 386.7 355 56.6
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 7.4e-105 384.8 351 56.1
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 6.3e-104 381.7 380 55.5
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 1.1e-103 380.9 353 58.4
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 5.3e-103 378.6 372 52.2
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 7.0e-103 378.3 370 53.2
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 9.1e-103 377.9 354 56.8
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 9.1e-103 377.9 373 52.3
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 2.1e-99 366.7 358 56.1
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 8.0e-99 364.8 331 56.2
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 1.5e-97 360.5 375 50.4
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 1.3e-96 357.5 326 56.4
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 1.8e-95 353.6 306 58.5
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 3.5e-94 349.4 368 51.4
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 7.7e-94 348.2 380 48.2
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 3.8e-93 345.9 312 56.1
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 5.0e-93 345.5 354 51.4
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 2.5e-92 343.2 335 55.5
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 1.6e-91 340.5 388 49.7
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 4.1e-87 325.9 373 47.2
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.3e-80 304.3 262 62.6
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 3.8e-77 292.7 298 55.0
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 1.2e-75 287.7 338 44.4
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 1.2e-73 281.2 381 40.7
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.4e-71 273.5 241 58.1
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 3.1e-71 273.1 298 52.3
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 4.5e-70 269.2 274 54.0
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 1.9e-68 263.8 477 36.5
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 7.3e-68 261.9 288 51.4
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 3.6e-67 259.6 405 38.8
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 8.0e-67 258.5 233 58.8
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 2.3e-66 256.9 383 38.6
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 1.3e-64 251.1 259 53.3
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.8e-58 230.7 388 35.3
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 3.4e-57 226.5 241 51.0
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 3.5e-54 216.5 199 51.3
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.4e-50 204.5 204 52.9
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 1.2e-49 201.4 336 36.0
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 2.0e-49 200.7 219 49.3
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.3e-48 198.0 253 44.7
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.9e-47 194.1 382 33.0
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 3.8e-40 169.9 154 52.6
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 2.3e-37 160.6 138 55.8
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.3e-36 156.8 115 63.5
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 3.4e-25 120.2 74 75.7
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 2.1e-22 110.9 428 24.1
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 7.4e-20 102.4 139 47.5
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 4.8e-19 99.8 162 33.3
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 9.3e-15 85.5 131 41.2
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 3.1e-10 70.5 73 53.4
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 4.0e-10 70.1 42 76.2
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.5e-09 68.2 84 45.2
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.1e-07 62.0 57 54.4
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 1.1e-07 62.0 49 63.3


User provided reference genes

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