Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 1.5e-169 599.4 297 100.0
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 1.7e-128 463.0 297 75.4
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 2.0e-124 449.5 292 75.0
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 3.7e-123 445.3 298 73.5
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 4.9e-123 444.9 297 72.4
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.4e-122 443.4 298 73.2
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.4e-122 442.6 285 74.7
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 4.1e-122 441.8 298 72.5
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 9.2e-122 440.7 293 72.0
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 2.7e-121 439.1 298 73.2
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 2.7e-121 439.1 292 73.6
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 6.0e-121 438.0 292 71.9
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 1.3e-120 436.8 297 71.4
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 2.3e-120 436.0 289 72.0
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 3.0e-120 435.6 287 73.2
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 3.0e-120 435.6 294 71.4
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 5.1e-120 434.9 292 72.6
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 5.1e-120 434.9 301 69.4
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 6.6e-120 434.5 294 71.8
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 1.5e-119 433.3 298 70.5
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.5e-119 433.3 294 72.1
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 4.3e-119 431.8 287 71.1
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 5.6e-119 431.4 296 70.6
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 1.2e-118 430.3 291 71.8
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.6e-118 428.7 296 69.9
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 3.6e-118 428.7 296 69.6
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 4.7e-118 428.3 291 71.5
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 8.1e-118 427.6 298 71.1
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 1.1e-117 427.2 285 71.6
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 1.4e-117 426.8 296 68.6
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 1.4e-117 426.8 296 68.6
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 1.8e-117 426.4 287 72.8
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 2.3e-117 426.0 293 70.0
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 4.0e-117 425.2 289 71.6
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 4.0e-117 425.2 266 74.8
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 6.8e-117 424.5 273 74.0
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 1.5e-116 423.3 282 70.9
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 2.0e-116 422.9 290 71.0
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 2.6e-116 422.5 295 69.8
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 4.4e-116 421.8 289 72.3
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 5.8e-116 421.4 274 73.4
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 9.9e-116 420.6 289 69.9
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 1.7e-115 419.9 296 68.6
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 3.7e-115 418.7 269 73.6
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 4.9e-115 418.3 288 70.5
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 4.9e-115 418.3 291 70.4
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 9.2e-114 414.1 286 69.9
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 1.6e-113 413.3 297 67.7
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 1.6e-113 413.3 280 70.4
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 2.7e-113 412.5 280 69.6
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 4.6e-113 411.8 298 68.5
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 7.8e-113 411.0 288 69.8
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.0e-112 410.6 270 73.7
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 3.0e-112 409.1 279 72.0
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 3.0e-112 409.1 287 71.1
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 3.9e-112 408.7 294 67.3
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 5.1e-112 408.3 291 69.8
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 5.1e-112 408.3 293 69.3
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 6.6e-112 407.9 242 81.0
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 6.6e-112 407.9 297 66.3
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 1.5e-111 406.8 291 69.8
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 3.3e-111 405.6 295 66.8
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 3.3e-111 405.6 287 69.0
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 1.2e-110 403.7 279 68.5
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 1.6e-110 403.3 279 68.1
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 2.1e-110 402.9 297 67.7
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 4.7e-110 401.7 291 65.6
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 1.1e-109 400.6 294 67.7
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 1.1e-109 400.6 286 67.1
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 6.8e-109 397.9 288 68.4
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 2.0e-108 396.4 296 65.9
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 2.0e-108 396.4 278 67.6
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 3.4e-108 395.6 277 68.6
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 4.4e-108 395.2 296 66.2
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 1.2e-105 387.1 285 65.3
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.3e-104 382.9 298 66.4
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 6.6e-104 381.3 265 69.1
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 6.6e-104 381.3 287 66.9
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 1.2e-102 377.1 294 62.6
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 1.4e-101 373.6 243 74.5
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 6.9e-101 371.3 232 75.9
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 2.0e-100 369.8 282 62.1
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 5.8e-100 368.2 287 63.4
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 4.9e-99 365.2 296 60.1
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 1.2e-97 360.5 238 73.1
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 1.6e-97 360.1 288 60.8
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 6.6e-96 354.8 235 72.3
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.1e-95 354.0 278 61.9
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 1.9e-95 353.2 297 60.9
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 4.8e-94 348.6 386 48.4
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 6.2e-94 348.2 280 62.1
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 2.4e-93 346.3 240 70.8
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 1.3e-91 340.5 276 62.7
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 1.1e-90 337.4 273 59.3
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 9.3e-90 334.3 271 56.8
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 3.0e-88 329.3 269 60.6
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 5.1e-88 328.6 260 62.3
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 5.1e-88 328.6 282 55.7
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 1.5e-87 327.0 279 60.9
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 4.3e-87 325.5 283 58.3
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 4.3e-87 325.5 283 58.3
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 4.3e-87 325.5 283 58.3
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 1.3e-86 323.9 277 57.4
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 1.3e-86 323.9 277 58.1
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 1.6e-86 323.6 277 57.8
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 2.1e-86 323.2 241 65.1
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 1.4e-85 320.5 226 67.3
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 5.3e-85 318.5 242 63.2
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 3.4e-84 315.8 278 58.3
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 1.7e-83 313.5 261 60.9
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 8.4e-83 311.2 202 71.8
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 6.0e-81 305.1 211 68.7
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 8.2e-78 294.7 284 51.8
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 1.3e-75 287.3 254 57.5
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 6.0e-73 278.5 223 60.1
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 5.7e-71 271.9 248 53.6
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 2.4e-69 266.5 203 64.0
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 8.8e-64 248.1 231 54.1
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 8.5e-59 231.5 226 50.4
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 1.4e-58 230.7 275 46.9
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 1.8e-53 213.8 137 71.5
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 3.1e-53 213.0 269 45.0
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 1.5e-52 210.7 225 48.4
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 9.4e-50 201.4 190 57.4
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 7.2e-42 175.3 284 37.3
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 3.6e-41 172.9 121 69.4
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 2.7e-33 146.7 128 53.9
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 1.2e-31 141.4 97 72.2
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 9.1e-29 131.7 218 34.9
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 3.2e-21 106.7 174 36.8
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 1.7e-19 100.9 172 35.5
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 2.9e-19 100.1 80 61.2
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 4.3e-18 96.3 115 47.0
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 6.1e-17 92.4 93 51.6
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 2.6e-15 87.0 48 83.3
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 3.7e-14 83.2 56 66.1
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 1.9e-10 70.9 50 62.0
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 5.2e-08 62.8 263 27.4
CARHR217150 Cardamine hirsuta HOM05D005541 ORTHO05D006875 5.8e-07 59.3 52 51.9
FvH4_1g02060 Fragaria vesca HOM05D005541 ORTHO05D006875 2.9e-06 57.0 88 37.5


User provided reference genes

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