Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 0.0e+00 1162.9 587 100.0
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 2.1e-279 965.3 579 82.7
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 4.0e-270 934.5 581 80.2
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 7.6e-269 930.2 590 79.2
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 1.9e-267 925.6 583 79.4
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 1.7e-265 919.1 575 78.3
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 2.3e-265 918.7 571 80.2
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 8.7e-265 916.8 572 80.6
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 8.7e-265 916.8 573 79.6
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 4.3e-264 914.4 580 79.7
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 2.8e-263 911.8 577 78.2
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 2.0e-261 905.6 573 79.9
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 5.8e-261 904.0 581 77.1
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 9.9e-261 903.3 576 77.4
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.4e-259 899.4 574 78.6
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 1.9e-259 899.0 574 78.2
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 7.1e-259 897.1 582 76.5
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 9.3e-259 896.7 575 78.6
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 9.3e-259 896.7 575 78.6
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 1.0e-257 893.3 577 76.4
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 1.7e-257 892.5 575 78.4
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 8.7e-257 890.2 577 76.9
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 7.3e-256 887.1 574 77.5
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 4.8e-255 884.4 577 76.6
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 1.5e-253 879.4 583 76.3
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 1.5e-253 879.4 568 76.4
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 7.6e-253 877.1 566 76.7
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 7.6e-253 877.1 582 75.6
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 2.9e-252 875.2 574 76.5
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 1.1e-251 873.2 575 77.0
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 1.9e-251 872.5 567 76.5
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 1.9e-251 872.5 565 77.0
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 7.1e-251 870.5 568 76.2
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 7.1e-251 870.5 568 76.2
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 7.1e-251 870.5 563 76.6
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 1.2e-250 869.8 607 73.1
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 1.2e-250 869.8 575 75.7
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 1.2e-250 869.8 565 77.0
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 3.5e-250 868.2 569 75.2
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 1.3e-249 866.3 566 76.7
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 3.9e-249 864.8 573 75.9
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 8.7e-249 863.6 583 74.4
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 1.5e-248 862.8 583 74.1
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 1.9e-248 862.4 572 75.9
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 1.3e-247 859.8 568 75.9
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 3.7e-247 858.2 564 74.5
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 8.1e-247 857.1 564 74.1
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 8.1e-247 857.1 573 74.5
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 6.9e-246 854.0 560 75.4
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 6.9e-246 854.0 589 73.3
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 2.6e-245 852.0 588 73.3
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 4.5e-245 851.3 579 73.2
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 2.5e-243 845.5 585 73.0
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 3.2e-243 845.1 582 72.3
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 9.3e-243 843.6 563 75.3
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 2.1e-242 842.4 563 74.4
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 7.9e-242 840.5 582 72.9
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 1.3e-241 839.7 558 75.3
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 6.7e-241 837.4 577 73.7
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 5.7e-240 834.3 553 76.3
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 3.7e-239 831.6 598 70.2
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 4.8e-239 831.2 581 71.8
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 4.8e-239 831.2 583 71.5
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 6.2e-239 830.9 571 72.3
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 1.1e-238 830.1 558 73.5
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 1.4e-238 829.7 581 71.8
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 4.1e-238 828.2 567 73.4
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 9.0e-238 827.0 585 72.1
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 9.0e-238 827.0 590 71.4
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 1.5e-237 826.2 583 71.4
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 2.0e-237 825.9 581 71.4
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.3e-236 823.2 574 73.9
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 2.9e-236 822.0 570 71.4
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 1.2e-234 816.6 573 71.6
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 1.8e-233 812.8 560 72.3
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 1.9e-232 809.3 574 71.1
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 1.3e-231 806.6 618 67.3
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 2.2e-231 805.8 577 70.4
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 1.2e-213 746.9 466 79.4
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 9.4e-211 737.3 469 78.5
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 6.7e-209 731.1 577 65.2
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 1.7e-207 726.5 580 64.7
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 4.1e-206 721.8 560 67.1
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 1.6e-205 719.9 626 61.7
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 2.0e-197 693.0 468 74.1
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 2.4e-190 669.5 432 78.7
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 7.0e-182 641.3 415 77.1
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 1.0e-180 637.5 628 55.1
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 1.7e-180 636.7 422 75.1
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 1.2e-176 624.0 405 75.3
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 1.1e-174 617.5 419 74.0
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 2.4e-174 616.3 613 54.6
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 2.4e-174 616.3 613 54.6
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 1.2e-168 597.4 405 74.8
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 1.7e-167 593.6 580 55.7
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 1.6e-165 587.0 402 72.9
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 1.7e-164 583.6 421 71.0
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 4.3e-163 578.9 416 71.6
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 1.1e-153 547.7 545 53.2
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 1.9e-139 500.4 305 79.7
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 1.8e-137 493.8 313 76.4
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 1.2e-125 454.5 329 69.9
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 8.7e-124 448.4 556 46.4
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 3.9e-116 422.9 660 39.2
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 2.1e-109 400.6 239 85.4
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 5.3e-89 332.8 197 84.8
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 3.8e-79 300.1 562 37.2
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 1.2e-75 288.5 161 90.1
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.1e-62 245.4 398 38.7
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.2e-61 241.9 142 78.2
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 1.5e-59 235.0 146 74.0
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 2.0e-56 224.6 121 86.8
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 3.3e-54 217.2 112 90.2
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 9.8e-51 205.7 104 89.4
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 3.9e-47 193.7 159 66.0
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 1.8e-44 184.9 103 89.3
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 9.9e-35 152.5 141 58.9
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 7.9e-24 116.3 68 79.4
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.3e-15 88.2 54 74.1
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 2.4e-12 78.2 446 24.4
Os11g0622600 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 5.7e-06 57.0 144 29.2
Lsat_1_v5_gn_9_3640 Lactuca sativa HOM05D002203 ORTHO05D002647 9.7e-06 56.2 181 23.2


User provided reference genes

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