Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 1.0e-60 236.5 116 100.0
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 1.9e-54 215.7 116 87.9
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 9.3e-54 213.4 116 87.9
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 1.6e-53 212.6 116 87.1
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 1.8e-52 209.1 112 86.6
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 2.3e-52 208.8 116 85.3
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 8.7e-52 206.8 116 87.1
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 1.5e-51 206.1 112 86.6
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 1.5e-51 206.1 111 87.4
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.5e-51 206.1 116 86.2
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 1.5e-51 206.1 111 87.4
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 1.9e-51 205.7 111 87.4
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 1.9e-51 205.7 111 86.5
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 1.9e-51 205.7 114 84.2
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 4.3e-51 204.5 116 84.5
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 7.4e-51 203.8 116 85.3
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 9.7e-51 203.4 116 83.6
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 1.3e-50 203.0 112 83.9
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 1.3e-50 203.0 116 84.5
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 2.2e-50 202.2 111 85.6
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 2.8e-50 201.8 113 84.1
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 2.8e-50 201.8 115 82.6
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 3.7e-50 201.4 114 83.3
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 3.7e-50 201.4 111 83.8
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 4.8e-50 201.1 111 85.6
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 6.3e-50 200.7 115 82.6
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 8.2e-50 200.3 111 85.6
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 8.2e-50 200.3 112 83.9
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 1.1e-49 199.9 111 82.9
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 1.4e-49 199.5 112 84.8
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 1.4e-49 199.5 115 81.7
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 1.8e-49 199.1 114 82.5
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 1.8e-49 199.1 115 82.6
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 2.4e-49 198.7 111 84.7
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 3.1e-49 198.4 115 81.7
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 3.1e-49 198.4 115 80.9
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 5.3e-49 197.6 116 80.2
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 5.3e-49 197.6 115 81.7
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 5.3e-49 197.6 111 82.9
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 5.3e-49 197.6 115 81.7
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 5.3e-49 197.6 116 82.8
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.2e-48 196.4 115 80.9
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 2.0e-48 195.7 116 80.2
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 2.0e-48 195.7 116 81.9
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 5.9e-48 194.1 116 81.9
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 7.7e-48 193.7 115 80.0
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 7.7e-48 193.7 116 81.9
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 1.0e-47 193.4 113 82.3
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 1.0e-47 193.4 114 80.7
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 1.0e-47 193.4 116 80.2
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 2.2e-47 192.2 116 80.2
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 2.2e-47 192.2 116 80.2
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 2.9e-47 191.8 112 82.1
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 5.0e-47 191.0 116 75.0
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 5.0e-47 191.0 116 80.2
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 6.5e-47 190.7 112 78.6
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 6.5e-47 190.7 111 82.0
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 8.5e-47 190.3 111 78.4
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 8.5e-47 190.3 116 79.3
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 8.5e-47 190.3 116 76.7
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 1.4e-46 189.5 111 78.4
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 1.4e-46 189.5 111 79.3
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 1.9e-46 189.1 111 77.5
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 1.9e-46 189.1 116 80.2
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 1.9e-46 189.1 116 77.6
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 2.5e-46 188.7 112 78.6
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 3.2e-46 188.3 111 78.4
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 4.2e-46 188.0 111 77.5
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 5.5e-46 187.6 111 76.6
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 5.5e-46 187.6 111 76.6
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 9.4e-46 186.8 111 75.7
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 1.2e-45 186.4 110 79.1
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 1.6e-45 186.0 116 75.9
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 2.1e-45 185.7 111 77.5
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 2.1e-45 185.7 116 75.9
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 2.7e-45 185.3 115 77.4
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 3.6e-45 184.9 116 76.7
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 4.6e-45 184.5 116 76.7
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 4.6e-45 184.5 111 78.4
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 6.1e-45 184.1 113 77.0
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 1.8e-44 182.6 112 78.6
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 3.0e-44 181.8 114 76.3
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 3.0e-44 181.8 115 75.7
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 3.0e-44 181.8 116 74.1
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 5.1e-44 181.0 116 74.1
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 6.7e-44 180.6 112 75.9
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 8.8e-44 180.3 112 74.1
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 8.8e-44 180.3 112 76.8
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 1.1e-43 179.9 116 74.1
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 1.5e-43 179.5 115 73.9
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 1.5e-43 179.5 140 67.1
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 4.3e-43 177.9 126 66.7
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 1.3e-42 176.4 111 73.0
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 1.3e-42 176.4 111 73.0
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 2.8e-42 175.3 132 64.4
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 3.1e-41 171.8 111 71.2
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 3.4e-40 168.3 111 70.3
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 1.9e-38 162.5 110 68.2
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 2.5e-38 162.2 102 71.6
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 4.2e-38 161.4 101 75.2
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 1.6e-37 159.5 108 68.5
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 1.6e-37 159.5 110 68.2
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 6.1e-37 157.5 113 66.4
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 1.1e-35 153.3 81 84.0
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 1.5e-35 152.9 108 66.7
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.3e-34 149.8 86 80.2
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 1.4e-33 146.4 107 63.6
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 1.8e-33 146.0 86 76.7
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 2.4e-33 145.6 134 58.2
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 9.1e-33 143.7 84 84.5
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 9.1e-33 143.7 101 69.3
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 3.5e-32 141.7 107 66.4
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 3.8e-31 138.3 74 89.2
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 8.5e-31 137.1 179 46.4
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 2.7e-29 132.1 105 59.0
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 4.7e-29 131.3 106 57.5
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 1.4e-28 129.8 70 88.6
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 1.1e-27 126.7 75 78.7
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 1.1e-27 126.7 75 78.7
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 1.1e-27 126.7 88 68.2
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 3.3e-27 125.2 70 87.1
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.3e-26 123.2 76 76.3
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 3.7e-26 121.7 67 82.1
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 3.7e-26 121.7 112 49.1
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 2.6e-24 115.5 111 53.2
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 6.5e-23 110.9 72 69.4
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 9.4e-22 107.1 59 83.1
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 3.0e-20 102.1 95 45.3
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 5.2e-20 101.3 78 62.8
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 8.8e-20 100.5 61 78.7
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 3.7e-18 95.1 55 76.4
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 2.0e-16 89.4 54 79.6
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 2.9e-15 85.5 50 84.0
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 3.6e-13 78.6 39 89.7
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 6.3e-10 67.8 60 55.0
CARHR125830 Cardamine hirsuta HOM05D005610 ORTHO05D006181 3.5e-08 62.0 38 68.4
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 7.7e-08 60.8 58 48.3


User provided reference genes

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