Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 1.5e-236 822.4 408 100.0
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 5.8e-191 671.0 409 81.2
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 4.1e-189 664.8 409 80.0
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 9.2e-189 663.7 409 79.2
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 1.0e-187 660.2 411 79.1
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 1.7e-187 659.4 409 78.0
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 6.6e-187 657.5 409 78.5
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 6.6e-187 657.5 409 78.5
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 2.5e-186 655.6 409 78.0
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 3.3e-186 655.2 409 78.7
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 9.5e-186 653.7 409 78.5
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 2.3e-184 649.0 410 77.1
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 8.9e-184 647.1 407 78.4
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 8.9e-184 647.1 408 76.2
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 1.2e-183 646.7 409 77.3
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 2.0e-183 646.0 407 78.4
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 2.0e-183 646.0 407 78.4
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 2.6e-183 645.6 409 77.5
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 9.8e-183 643.7 409 77.3
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 1.7e-182 642.9 409 76.0
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 3.7e-182 641.7 412 75.5
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.1e-181 640.2 409 76.3
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.9e-181 639.4 399 78.2
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.9e-181 639.4 409 76.0
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.4e-181 639.0 399 77.9
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 2.4e-181 639.0 409 76.0
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 9.2e-181 637.1 407 76.9
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 9.2e-181 637.1 409 76.0
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.2e-180 636.7 409 75.6
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.6e-180 636.3 408 76.7
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.6e-180 636.3 409 76.0
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 3.5e-180 635.2 409 75.3
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 4.6e-180 634.8 409 75.1
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 5.1e-179 631.3 408 75.7
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 6.6e-179 630.9 410 74.6
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 1.5e-178 629.8 408 75.0
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.9e-178 629.4 409 75.6
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 1.2e-177 626.7 409 75.8
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.1e-177 625.9 408 73.8
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 2.3e-176 622.5 408 74.3
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 3.4e-175 618.6 409 73.1
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 3.4e-175 618.6 409 73.1
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 5.8e-175 617.8 408 73.8
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.3e-174 616.7 409 73.3
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 2.9e-174 615.5 409 74.6
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 2.9e-174 615.5 409 72.4
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 3.7e-174 615.1 409 72.9
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 2.4e-173 612.5 411 72.7
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 1.2e-172 610.1 410 72.9
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 2.7e-172 609.0 409 73.8
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 2.7e-172 609.0 408 73.3
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 1.0e-171 607.1 407 71.5
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 1.0e-171 607.1 408 72.3
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 1.3e-171 606.7 409 73.3
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 2.3e-171 605.9 409 71.4
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 5.1e-171 604.7 409 74.1
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 8.6e-171 604.0 408 70.8
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 1.9e-170 602.8 409 71.4
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 2.5e-170 602.4 409 71.6
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 2.5e-170 602.4 402 72.9
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 3.3e-170 602.1 407 71.7
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 7.3e-170 600.9 409 70.9
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 7.3e-170 600.9 404 73.5
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 9.5e-170 600.5 411 72.3
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 1.2e-169 600.1 409 73.6
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 1.4e-168 596.7 412 71.4
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 2.4e-168 595.9 409 72.1
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 3.1e-168 595.5 412 70.9
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 4.0e-168 595.1 411 69.6
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 4.0e-168 595.1 410 72.2
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 5.2e-168 594.7 407 71.0
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 1.5e-167 593.2 412 70.9
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 2.0e-167 592.8 410 72.0
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 3.4e-167 592.0 412 70.6
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 3.4e-167 592.0 407 70.0
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 4.4e-167 591.7 406 71.4
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 5.8e-167 591.3 440 69.1
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 5.8e-167 591.3 409 70.7
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 9.9e-167 590.5 408 69.4
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 1.3e-166 590.1 412 70.6
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 1.3e-166 590.1 412 70.6
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 1.3e-166 590.1 412 70.6
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 2.2e-166 589.3 409 70.9
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 4.9e-166 588.2 409 68.7
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 8.4e-166 587.4 409 69.7
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 1.1e-165 587.0 409 70.4
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 1.1e-165 587.0 401 71.3
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.4e-165 586.6 409 70.4
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 1.4e-165 586.6 409 68.9
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 1.4e-165 586.6 409 68.9
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 3.2e-165 585.5 403 71.7
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 9.2e-165 583.9 408 69.4
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 1.0e-163 580.5 412 70.1
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 1.3e-163 580.1 407 69.8
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 2.3e-163 579.3 410 70.5
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 2.3e-163 579.3 405 69.9
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 3.0e-163 578.9 408 69.6
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 3.9e-163 578.6 405 69.6
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 6.6e-163 577.8 408 68.6
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 9.6e-162 573.9 406 69.2
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 1.2e-161 573.5 409 70.9
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 2.1e-161 572.8 404 69.1
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 2.8e-161 572.4 403 69.7
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 1.8e-160 569.7 404 70.5
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 3.1e-160 568.9 404 70.3
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 3.1e-160 568.9 358 76.5
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 1.7e-158 563.1 424 66.5
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 4.6e-156 555.1 361 74.8
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 9.6e-154 547.4 408 66.9
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 3.6e-153 545.4 406 66.0
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 5.8e-151 538.1 495 58.2
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 7.6e-151 537.7 409 65.0
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 4.9e-150 535.0 405 64.9
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.4e-149 533.5 409 65.3
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 1.9e-149 533.1 405 64.4
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 5.4e-149 531.6 351 73.5
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 1.1e-144 517.3 407 62.2
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.7e-140 502.7 405 61.0
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 8.7e-139 497.7 314 79.0
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 7.4e-138 494.6 408 63.0
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 2.1e-132 476.5 418 55.5
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 4.8e-129 465.3 315 74.3
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 4.1e-128 462.2 406 57.6
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 2.5e-117 426.4 376 57.2
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 6.7e-115 418.3 273 72.9
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 2.5e-109 399.8 315 63.8
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 2.1e-108 396.7 273 68.9
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 1.1e-104 384.4 267 71.2
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 3.5e-103 379.4 405 49.9
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 1.9e-101 373.6 420 48.1
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 4.0e-99 365.9 413 55.2
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 2.9e-94 349.7 418 45.9
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 3.6e-92 342.8 414 45.7
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 9.8e-82 308.1 253 62.1
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 1.0e-78 298.1 443 40.0
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 5.0e-70 269.2 161 79.5
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 8.6e-70 268.5 176 73.3
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 1.9e-64 250.8 184 67.9
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 5.4e-64 249.2 214 56.5
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 9.2e-64 248.4 174 74.7
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 1.3e-62 244.6 176 67.0
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 1.4e-56 224.6 135 80.7
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 3.3e-53 213.4 367 34.9
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.6e-52 211.1 193 56.5
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 2.1e-52 210.7 148 68.2
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 1.9e-48 197.6 118 77.1
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 1.3e-36 158.3 93 78.5
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 5.3e-35 152.9 97 74.2
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 2.1e-23 114.4 98 66.3
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 5.0e-17 93.2 70 62.9
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 2.1e-15 87.8 85 62.4
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 8.2e-12 75.9 57 66.7


User provided reference genes

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