Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 1.7e-188 662.5 338 100.0
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 6.2e-98 361.7 341 55.4
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 6.2e-98 361.7 322 56.5
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 2.3e-97 359.8 343 56.3
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 1.5e-96 357.1 336 57.4
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 2.0e-96 356.7 342 55.6
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 5.8e-96 355.1 343 54.2
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 7.6e-96 354.8 336 56.0
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 9.9e-96 354.4 318 57.9
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 1.3e-95 354.0 342 55.0
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 1.9e-94 350.1 278 62.6
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 2.4e-94 349.7 336 55.7
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 7.8e-93 344.7 332 53.9
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 1.7e-92 343.6 341 53.4
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 5.1e-92 342.0 340 53.8
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 1.1e-91 340.9 332 54.5
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.1e-91 340.9 332 53.3
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.9e-91 340.1 317 56.2
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.9e-91 340.1 332 53.3
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 4.3e-91 339.0 311 56.3
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 5.6e-91 338.6 324 55.9
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.1e-90 336.7 339 52.8
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 6.2e-90 335.1 339 52.5
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 6.2e-90 335.1 312 57.1
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 8.1e-90 334.7 278 60.1
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 2.4e-89 333.2 342 51.8
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 3.1e-89 332.8 328 53.7
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.2e-89 332.0 334 52.7
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.5e-88 330.5 330 52.7
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 2.0e-88 330.1 306 56.9
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.3e-87 327.4 300 56.3
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.7e-87 327.0 342 52.9
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 2.2e-87 326.6 335 53.7
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 6.4e-87 325.1 316 55.7
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 5.4e-86 322.0 269 58.7
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 7.1e-86 321.6 315 53.3
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 7.1e-86 321.6 339 48.1
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 1.6e-85 320.5 314 56.1
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.6e-85 320.5 269 58.4
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.6e-85 320.5 314 53.5
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 2.1e-85 320.1 337 52.8
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 4.6e-85 318.9 300 58.0
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.6e-85 318.9 269 58.7
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 4.6e-85 318.9 340 52.9
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 7.8e-85 318.2 337 52.5
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.0e-84 317.8 332 51.5
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.0e-84 317.8 341 53.7
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 2.3e-84 316.6 319 53.6
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.0e-84 316.2 332 52.7
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.9e-84 315.8 333 53.8
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 5.1e-84 315.5 338 54.1
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 6.6e-84 315.1 286 57.3
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 6.6e-84 315.1 255 60.8
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 1.5e-83 313.9 340 51.8
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 1.9e-83 313.5 313 55.0
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 2.5e-83 313.2 273 55.3
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 3.3e-83 312.8 287 54.7
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.6e-83 312.0 332 53.9
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 7.3e-83 311.6 313 51.4
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.8e-82 309.7 349 49.6
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.8e-82 309.7 307 55.7
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.8e-82 308.9 305 55.4
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 8.1e-82 308.1 288 56.2
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 1.1e-81 307.8 288 54.9
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 1.1e-81 307.8 288 55.9
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 1.1e-81 307.8 298 56.4
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.4e-81 307.4 332 52.1
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.4e-81 307.4 297 51.9
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 2.4e-81 306.6 310 52.6
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 3.1e-81 306.2 328 49.4
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 3.1e-81 306.2 303 53.5
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 4.0e-81 305.8 328 50.3
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 9.0e-81 304.7 288 54.2
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.2e-80 304.3 281 55.2
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 1.2e-80 304.3 311 52.7
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.2e-80 304.3 358 48.9
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 1.5e-80 303.9 329 49.8
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 2.6e-80 303.1 287 55.1
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 5.8e-80 302.0 307 51.1
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 5.8e-80 302.0 318 50.6
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 7.6e-80 301.6 336 47.6
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 1.7e-79 300.4 300 53.3
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 1.7e-79 300.4 335 49.9
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 2.2e-79 300.1 267 55.8
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 2.9e-79 299.7 327 48.3
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.8e-79 299.3 339 47.2
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 4.9e-79 298.9 303 52.5
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 4.9e-79 298.9 290 54.5
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 6.4e-79 298.5 287 54.4
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 8.4e-79 298.1 343 48.7
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 8.4e-79 298.1 342 49.4
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 1.4e-78 297.4 317 50.5
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 1.9e-78 297.0 319 50.8
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 3.2e-78 296.2 296 52.4
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.2e-78 296.2 259 56.8
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.4e-78 295.4 259 56.8
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 5.4e-78 295.4 247 58.7
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 9.3e-78 294.7 288 56.2
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 9.3e-78 294.7 318 50.3
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 1.2e-77 294.3 303 51.2
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 1.6e-77 293.9 303 51.2
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 2.1e-77 293.5 333 47.1
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.1e-77 293.5 340 47.1
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 2.1e-77 293.5 286 54.5
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 2.7e-77 293.1 333 47.4
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 2.7e-77 293.1 314 52.5
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.7e-77 293.1 311 50.8
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.5e-77 292.7 269 55.0
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 3.5e-77 292.7 310 50.3
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 4.6e-77 292.4 329 47.4
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 4.6e-77 292.4 281 52.3
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 6.0e-77 292.0 324 48.1
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 7.9e-77 291.6 332 46.4
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 7.9e-77 291.6 290 54.1
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 7.9e-77 291.6 285 51.9
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 7.9e-77 291.6 315 49.8
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 1.0e-76 291.2 325 49.2
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 2.3e-76 290.0 289 53.3
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 3.0e-76 289.7 317 49.8
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 3.9e-76 289.3 256 56.2
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 6.7e-76 288.5 347 45.5
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 8.7e-76 288.1 296 51.4
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 1.1e-75 287.7 337 47.8
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 1.1e-75 287.7 286 50.7
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 1.9e-75 287.0 303 50.5
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 1.9e-75 287.0 331 47.7
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 2.5e-75 286.6 303 50.5
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 2.5e-75 286.6 258 55.8
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 3.3e-75 286.2 289 52.9
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 4.3e-75 285.8 324 49.1
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 9.6e-75 284.6 294 52.4
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 1.3e-74 284.3 301 50.2
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 1.3e-74 284.3 301 50.2
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 1.3e-74 284.3 320 48.4
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 1.3e-74 284.3 277 52.7
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 1.4e-73 280.8 330 45.8
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 1.4e-73 280.8 330 45.8
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 7.6e-72 275.0 314 49.7
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 1.4e-70 270.8 306 47.4
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 1.4e-70 270.8 308 49.4
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 1.6e-69 267.3 283 49.5
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 2.1e-69 266.9 305 47.5
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 1.0e-68 264.6 319 43.6
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 3.0e-68 263.1 245 53.9
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 3.0e-68 263.1 267 49.4
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 4.5e-64 249.2 246 50.4
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 3.8e-63 246.1 289 49.5
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 4.6e-61 239.2 262 48.1
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 4.6e-61 239.2 254 46.1
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 1.0e-60 238.0 366 43.2
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.3e-60 237.7 160 70.0
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 8.2e-58 228.4 276 48.6
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 3.8e-55 219.5 247 48.2
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 2.5e-54 216.9 156 62.2
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 1.0e-52 211.5 176 54.5
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.1e-46 191.4 150 58.0
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 9.4e-46 188.3 220 46.8
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 9.4e-46 188.3 244 44.7
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 7.4e-43 178.7 130 66.9
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 1.5e-40 171.0 169 49.1
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 6.5e-39 165.6 219 42.9
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 9.4e-38 161.8 265 37.0
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 6.1e-37 159.1 224 45.5
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 3.9e-36 156.4 221 39.4
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 3.5e-32 143.3 266 38.7
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 5.0e-31 139.4 90 73.3
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.6e-29 134.4 187 40.1
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 5.2e-28 129.4 107 62.6
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.0e-27 127.5 76 77.6
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 4.1e-25 119.8 91 65.9
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 1.7e-23 114.4 80 68.8
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 2.0e-19 100.9 80 62.5
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 5.7e-19 99.4 127 40.9
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 4.1e-17 93.2 81 53.1
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.0e-07 62.0 56 48.2


User provided reference genes

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