Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G4292 Punica granatum HOM05D007045 ORTHO05D008872 1.9e-66 255.8 136 100.0
Eucgr.K00089 Eucalyptus grandis HOM05D007045 ORTHO05D008872 6.5e-30 134.4 137 62.0
Prupe.2G325600 Prunus persica HOM05D007045 ORTHO05D008872 2.5e-29 132.5 136 57.4
Actinidia34304 Actinidia chinensis HOM05D007045 ORTHO05D008872 3.2e-29 132.1 136 61.0
Actinidia08743 Actinidia chinensis HOM05D007045 ORTHO05D008872 3.5e-28 128.6 127 61.4
TAR375G0210 Trochodendron aralioides HOM05D007045 ORTHO05D008872 6.0e-28 127.9 136 56.6
Dinv29160 Davidia involucrata HOM05D007045 ORTHO05D008872 1.3e-27 126.7 110 64.5
QL09p024203 Quercus lobata HOM05D007045 ORTHO05D008872 1.3e-27 126.7 135 57.0
QL09p024468 Quercus lobata HOM05D007045 ORTHO05D008872 1.3e-27 126.7 135 57.0
Cfa015871 Carpinus fangiana HOM05D007045 ORTHO05D008872 3.9e-27 125.2 124 58.9
Oeu041498.1 Olea europaea HOM05D007045 ORTHO05D008872 3.9e-27 125.2 111 64.0
Gohir.A09G104600 Gossypium hirsutum HOM05D007045 ORTHO05D008872 8.7e-27 124.0 141 58.9
CSS0008098 Camellia sinensis var. sinensis HOM05D007045 ORTHO05D008872 1.1e-26 123.6 136 57.4
CiPaw.05G239000 Carya illinoinensis HOM05D007045 ORTHO05D008872 1.5e-26 123.2 136 58.8
Gohir.D09G101300 Gossypium hirsutum HOM05D007045 ORTHO05D008872 1.5e-26 123.2 141 58.9
Nitab4.5_0011930g0010 Nicotiana tabacum HOM05D007045 ORTHO05D008872 1.5e-26 123.2 111 65.8
TPR.G25217 Trifolium pratense HOM05D007045 ORTHO05D008872 3.3e-26 122.1 136 55.9
Medtr6g004010 Medicago truncatula HOM05D007045 ORTHO05D008872 5.7e-26 121.3 136 56.6
Nitab4.5_0000021g0510 Nicotiana tabacum HOM05D007045 ORTHO05D008872 7.4e-26 120.9 129 57.4
Glyma.05G000800 Glycine max HOM05D007045 ORTHO05D008872 9.7e-26 120.6 127 57.5
Manes.08G162500 Manihot esculenta HOM05D007045 ORTHO05D008872 1.6e-25 119.8 136 55.9
Lsat_1_v5_gn_9_47440 Lactuca sativa HOM05D007045 ORTHO05D008872 2.8e-25 119.0 128 57.0
Sopen03g027710 Solanum pennellii HOM05D007045 ORTHO05D008872 2.8e-25 119.0 137 54.7
Potri.019G049300 Populus trichocarpa HOM05D007045 ORTHO05D008872 3.7e-25 118.6 110 62.7
SGA_v2.0_scaffold44G16886 Striga asiatica HOM05D007045 ORTHO05D008872 6.3e-25 117.9 136 56.6
Sabra19G0058900 Salix brachista HOM05D007045 ORTHO05D008872 8.2e-25 117.5 127 59.1
Solyc03g096960.3 Solanum lycopersicum HOM05D007045 ORTHO05D008872 1.1e-24 117.1 139 54.0
Glyma.19G000800 Glycine max HOM05D007045 ORTHO05D008872 2.4e-24 115.9 110 60.9
Nn1g01937 Nelumbo nucifera HOM05D007045 ORTHO05D008872 3.1e-24 115.5 136 53.7
arahy.Tifrunner.gnm1.ann1.X6PR1P Arachis hypogaea HOM05D007045 ORTHO05D008872 5.3e-24 114.8 119 58.0
MSTRG.26931 Avicennia marina HOM05D007045 ORTHO05D008872 5.3e-24 114.8 136 54.4
Ca_04126_v3 Cicer arietinum L. HOM05D007045 ORTHO05D008872 5.3e-24 114.8 136 52.2
MD07G1308400 Malus domestica HOM05D007045 ORTHO05D008872 9.0e-24 114.0 136 52.9
ECA232G1212 Erigeron canadensis HOM05D007045 ORTHO05D008872 1.2e-23 113.6 137 55.5
Migut.F00099 Erythranthe guttata HOM05D007045 ORTHO05D008872 1.2e-23 113.6 134 56.0
PGSC0003DMG400000566 Solanum tuberosum HOM05D007045 ORTHO05D008872 1.2e-23 113.6 103 61.2
vmacro10189 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 1.2e-23 113.6 76 75.0
vmacro23523 Vaccinium macrocarpon HOM05D007045 ORTHO05D008872 1.2e-23 113.6 76 75.0
GSVIVG01024412001 Vitis vinifera HOM05D007045 ORTHO05D008872 1.2e-23 113.6 136 52.2
Duzib168G0464 Durio zibethinus HOM05D007045 ORTHO05D008872 1.5e-23 113.2 139 54.7
THA.LOC104805790 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 1.5e-23 113.2 136 54.4
TWI34G0185 Tripterygium wilfordii HOM05D007045 ORTHO05D008872 1.5e-23 113.2 125 56.8
PSO063G7366 Papaver somniferum HOM05D007045 ORTHO05D008872 2.0e-23 112.8 136 50.7
Psat1g052360 Pisum sativum HOM05D007045 ORTHO05D008872 2.0e-23 112.8 136 51.5
PSO782G4413 Papaver somniferum HOM05D007045 ORTHO05D008872 2.6e-23 112.5 136 50.7
Gorai.006G118700 Gossypium raimondii HOM05D007045 ORTHO05D008872 5.9e-23 111.3 115 60.9
SalBow4G0316 Salvia bowleyana HOM05D007045 ORTHO05D008872 1.7e-22 109.8 136 55.1
THA.LOC104821194 Tarenaya hassleriana HOM05D007045 ORTHO05D008872 1.7e-22 109.8 139 53.2
Hma1.2p1_1680F.1_g297210 Hydrangea macrophylla HOM05D007045 ORTHO05D008872 3.8e-22 108.6 160 48.8
Peaxi162Scf00745g00819 Petunia axillaris HOM05D007045 ORTHO05D008872 3.8e-22 108.6 82 68.3
arahy.Tifrunner.gnm1.ann1.X2XK4P Arachis hypogaea HOM05D007045 ORTHO05D008872 8.5e-22 107.5 136 49.3
HanXRQChr05g0141731 Helianthus annuus HOM05D007045 ORTHO05D008872 1.1e-21 107.1 104 57.7
Hund09789 Selenicereus undatus HOM05D007045 ORTHO05D008872 1.4e-21 106.7 137 54.0
DCAR_020406 Daucus carota HOM05D007045 ORTHO05D008872 1.9e-21 106.3 111 55.9
MD01G1235600 Malus domestica HOM05D007045 ORTHO05D008872 1.9e-21 106.3 77 70.1
Thecc.09G264800 Theobroma cacao HOM05D007045 ORTHO05D008872 1.9e-21 106.3 139 53.2
AUR62002059 Chenopodium quinoa HOM05D007045 ORTHO05D008872 2.5e-21 105.9 136 51.5
VMungo0464G1228 Vigna mungo HOM05D007045 ORTHO05D008872 2.5e-21 105.9 136 52.2
Atru.chr12.1972 Acer truncatum HOM05D007045 ORTHO05D008872 3.2e-21 105.5 110 56.4
FvH4_7g33930 Fragaria vesca HOM05D007045 ORTHO05D008872 3.2e-21 105.5 136 51.5
FAN01G0253 Fragaria x ananassa HOM05D007045 ORTHO05D008872 3.2e-21 105.5 136 51.5
FAN03G1405 Fragaria x ananassa HOM05D007045 ORTHO05D008872 3.2e-21 105.5 136 50.7
Ciclev10022834m.g Citrus clementina HOM05D007045 ORTHO05D008872 4.2e-21 105.1 136 53.7
EL10Ac3g05081 Beta vulgaris HOM05D007045 ORTHO05D008872 5.5e-21 104.8 136 50.7
CAN.G303.80 Capsicum annuum HOM05D007045 ORTHO05D008872 5.5e-21 104.8 89 61.8
Lj2g0018633 Lotus japonicus HOM05D007045 ORTHO05D008872 9.4e-21 104.0 124 51.6
CANSAT56G0844 Cannabis sativa HOM05D007045 ORTHO05D008872 3.6e-20 102.1 84 63.1
CANSAT56G3248 Cannabis sativa HOM05D007045 ORTHO05D008872 3.6e-20 102.1 84 63.1
SalBow4G2109 Salvia bowleyana HOM05D007045 ORTHO05D008872 4.6e-20 101.7 164 47.6
Sp1g07240 Schrenkiella parvula HOM05D007045 ORTHO05D008872 4.6e-20 101.7 136 50.0
Thhalv10009120m.g Eutrema salsugineum HOM05D007045 ORTHO05D008872 6.1e-20 101.3 136 50.7
Sc15g0002300 Simmondsia chinensis HOM05D007045 ORTHO05D008872 7.9e-20 100.9 111 56.8
unitig_92.g28229 Utricularia gibba HOM05D007045 ORTHO05D008872 1.0e-19 100.5 136 50.7
HPP92_009021 Vanilla planifolia HOM05D007045 ORTHO05D008872 1.0e-19 100.5 127 48.8
COL.COLO4_25316 Corchorus olitorius HOM05D007045 ORTHO05D008872 2.3e-19 99.4 137 52.6
Phvul.004G000900 Phaseolus vulgaris HOM05D007045 ORTHO05D008872 3.0e-19 99.0 104 54.8
CDE03G0192 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 3.9e-19 98.6 136 44.1
AT1G08580 Arabidopsis thaliana HOM05D007045 ORTHO05D008872 6.7e-19 97.8 136 50.0
BraA09t41928Z Brassica rapa HOM05D007045 ORTHO05D008872 2.5e-18 95.9 117 50.4
BcaB07g34101 Brassica carinata HOM05D007045 ORTHO05D008872 3.3e-18 95.5 122 51.6
C05p06680 Brassica napus HOM05D007045 ORTHO05D008872 3.3e-18 95.5 122 51.6
BolC5t29428H Brassica oleracea HOM05D007045 ORTHO05D008872 3.3e-18 95.5 122 51.6
A09p65840 Brassica napus HOM05D007045 ORTHO05D008872 4.3e-18 95.1 117 49.6
BcaC07g41937 Brassica carinata HOM05D007045 ORTHO05D008872 5.7e-18 94.7 136 48.5
Ah.04g156750 Amaranthus hybridus HOM05D007045 ORTHO05D008872 7.4e-18 94.4 111 52.3
RcHm_v2.0_Chr1g0384121 Rosa chinensis HOM05D007045 ORTHO05D008872 7.4e-18 94.4 136 47.8
C08p49930 Brassica napus HOM05D007045 ORTHO05D008872 9.7e-18 94.0 136 47.8
A06p05570 Brassica napus HOM05D007045 ORTHO05D008872 1.3e-17 93.6 136 47.8
BraA06t23765Z Brassica rapa HOM05D007045 ORTHO05D008872 1.3e-17 93.6 136 47.8
Aa31sc20G150 Aethionema arabicum HOM05D007045 ORTHO05D008872 1.7e-17 93.2 138 48.6
FAN10G3708 Fragaria x ananassa HOM05D007045 ORTHO05D008872 1.7e-17 93.2 108 50.9
BolC8t52521H Brassica oleracea HOM05D007045 ORTHO05D008872 2.8e-17 92.4 136 47.1
Aqoxy3G02091 Aquilegia oxysepala HOM05D007045 ORTHO05D008872 6.3e-17 91.3 139 47.5
AUR62028173 Chenopodium quinoa HOM05D007045 ORTHO05D008872 8.2e-17 90.9 136 48.5
CDE06G1066 Ceratophyllum demersum HOM05D007045 ORTHO05D008872 1.4e-16 90.1 95 53.7
ATR0829G056 Amborella trichopoda HOM05D007045 ORTHO05D008872 3.1e-16 89.0 116 48.3
AL1G19010 Arabidopsis lyrata HOM05D007045 ORTHO05D008872 4.1e-16 88.6 136 45.6
Cc02_g00300 Coffea canephora HOM05D007045 ORTHO05D008872 5.3e-16 88.2 132 46.2
CARHR008480 Cardamine hirsuta HOM05D007045 ORTHO05D008872 2.6e-15 85.9 136 43.4
Sed0010546 Sechium edule HOM05D007045 ORTHO05D008872 1.0e-14 84.0 136 46.3
MELO3C006770.2 Cucumis melo HOM05D007045 ORTHO05D008872 1.9e-13 79.7 111 46.8
CsaV3_3G015710 Cucumis sativus L. HOM05D007045 ORTHO05D008872 3.2e-13 79.0 111 46.8
Carub.0001s0794 Capsella rubella HOM05D007045 ORTHO05D008872 5.5e-13 78.2 70 57.1
Potri.013G091200 Populus trichocarpa HOM05D007045 ORTHO05D008872 7.2e-13 77.8 83 54.2
Os02g0604100 Oryza sativa ssp. japonica HOM05D007045 ORTHO05D008872 2.1e-12 76.3 138 43.5
ClCG05G007020 Citrullus lanatus HOM05D007045 ORTHO05D008872 2.3e-11 72.8 112 46.4
Zm00001eb246550 Zea mays HOM05D007045 ORTHO05D008872 6.7e-11 71.2 139 42.4
MELO3C032558.2 Cucumis melo HOM05D007045 ORTHO05D008872 3.3e-10 68.9 76 52.6
Pp3c13_5290 Physcomitrium patens HOM05D007045 ORTHO05D008872 2.2e-09 66.2 119 39.5
Mapoly0084s0018 Marchantia polymorpha HOM05D007045 ORTHO05D008872 1.0e-06 57.4 143 35.7


User provided reference genes

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