Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 2.6e-27 124.8 70 100.0
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 5.0e-18 94.0 70 82.9
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.5e-18 93.6 70 80.0
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.5e-17 91.7 70 80.0
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 4.2e-17 90.9 70 78.6
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 7.2e-17 90.1 65 83.1
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 9.4e-17 89.7 70 78.6
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.2e-16 89.4 65 81.5
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 1.2e-16 89.4 65 78.5
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 2.1e-16 88.6 63 81.0
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 2.1e-16 88.6 70 78.6
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 4.7e-16 87.4 65 80.0
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 4.7e-16 87.4 63 79.4
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 8.0e-16 86.7 65 78.5
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 8.0e-16 86.7 65 83.1
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 8.0e-16 86.7 65 78.5
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 1.0e-15 86.3 70 72.9
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 1.0e-15 86.3 60 83.3
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.0e-15 86.3 65 75.4
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 1.0e-15 86.3 68 76.5
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 1.4e-15 85.9 65 75.4
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 1.4e-15 85.9 63 77.8
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.8e-15 85.5 70 71.4
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.8e-15 85.5 70 75.7
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.8e-15 85.5 70 75.7
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.8e-15 85.5 70 75.7
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 2.3e-15 85.1 70 72.9
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 3.0e-15 84.7 65 76.9
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 3.0e-15 84.7 70 74.3
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 3.0e-15 84.7 70 74.3
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.0e-15 84.7 65 75.4
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.0e-15 84.7 65 75.4
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 3.0e-15 84.7 67 74.6
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 3.0e-15 84.7 67 74.6
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 3.9e-15 84.3 65 76.9
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 5.2e-15 84.0 70 72.9
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 5.2e-15 84.0 65 76.9
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 6.7e-15 83.6 65 73.8
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 8.8e-15 83.2 70 71.4
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 8.8e-15 83.2 63 77.8
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 8.8e-15 83.2 63 77.8
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 8.8e-15 83.2 70 71.4
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.1e-14 82.8 70 72.9
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.1e-14 82.8 70 71.4
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 1.5e-14 82.4 70 74.3
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.5e-14 82.4 65 75.4
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 1.5e-14 82.4 65 75.4
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 2.0e-14 82.0 65 73.8
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 2.0e-14 82.0 70 74.3
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.0e-14 82.0 70 71.4
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 3.3e-14 81.3 70 72.9
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 5.7e-14 80.5 70 71.4
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 7.4e-14 80.1 66 72.7
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 7.4e-14 80.1 68 73.5
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 7.4e-14 80.1 70 70.0
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 7.4e-14 80.1 65 70.8
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 7.4e-14 80.1 60 76.7
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 9.7e-14 79.7 77 67.5
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 1.3e-13 79.3 70 70.0
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 1.3e-13 79.3 69 69.6
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 1.3e-13 79.3 63 71.4
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 1.3e-13 79.3 69 68.1
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 1.7e-13 79.0 69 71.0
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.7e-13 79.0 63 71.4
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.2e-13 78.6 63 71.4
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 3.7e-13 77.8 60 75.0
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 3.7e-13 77.8 60 75.0
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 3.7e-13 77.8 70 70.0
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 6.3e-13 77.0 69 73.9
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 1.1e-12 76.3 60 73.3
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 1.8e-12 75.5 59 74.6
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 2.4e-12 75.1 63 73.0
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 2.4e-12 75.1 66 71.2
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 4.1e-12 74.3 59 72.9
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 5.3e-12 73.9 70 67.1
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 7.0e-12 73.6 72 66.7
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 7.0e-12 73.6 54 81.5
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 9.1e-12 73.2 61 77.0
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 1.6e-11 72.4 54 79.6
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 2.0e-11 72.0 65 63.1
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 2.0e-11 72.0 64 62.5
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 2.0e-11 72.0 64 62.5
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 2.6e-11 71.6 63 65.1
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 1.0e-10 69.7 64 70.3
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 1.0e-10 69.7 63 63.5
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 1.0e-10 69.7 63 65.1
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 1.0e-10 69.7 63 65.1
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 1.3e-10 69.3 63 65.1
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 1.3e-10 69.3 65 61.5
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 1.3e-10 69.3 63 65.1
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 1.3e-10 69.3 63 65.1
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 1.3e-10 69.3 65 61.5
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 1.3e-10 69.3 63 63.5
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 3.8e-10 67.8 61 73.8
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 6.5e-10 67.0 63 61.9
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 1.1e-09 66.2 63 61.9
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 1.1e-09 66.2 65 61.5
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 2.5e-09 65.1 58 72.4
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 4.7e-08 60.8 72 55.6
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.4e-07 59.3 63 55.6
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 1.8e-07 58.9 63 55.6
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 1.8e-07 58.9 61 62.3
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 2.3e-07 58.5 55 63.6
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 3.0e-07 58.2 70 55.7
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 4.0e-07 57.8 55 63.6
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 4.0e-07 57.8 67 52.2
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 4.0e-07 57.8 58 58.6
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 4.0e-07 57.8 63 54.0
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 5.2e-07 57.4 55 61.8
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 5.2e-07 57.4 56 60.7
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 6.7e-07 57.0 61 55.7
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.2e-06 56.2 61 55.7
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 1.2e-06 56.2 58 58.6
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 1.5e-06 55.8 62 56.5
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.0e-06 55.5 63 54.0
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 2.6e-06 55.1 63 52.4
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.6e-06 55.1 63 52.4
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 3.3e-06 54.7 55 58.2
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.3e-06 54.7 61 57.4
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.4e-06 54.3 64 54.7
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.4e-06 54.3 64 54.7
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 4.4e-06 54.3 63 52.4
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 4.4e-06 54.3 58 51.7
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 5.7e-06 53.9 63 50.8
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 5.7e-06 53.9 63 52.4
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 7.5e-06 53.5 67 50.7


User provided reference genes

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