Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 2.3e-108 395.6 197 100.0
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 1.7e-92 342.8 196 83.2
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.4e-86 322.4 196 76.0
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 7.0e-86 320.9 195 74.9
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 1.2e-85 320.1 196 74.0
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 7.8e-85 317.4 196 74.5
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 2.3e-84 315.8 196 73.0
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 2.3e-84 315.8 196 73.5
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 3.0e-84 315.5 196 74.0
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 6.6e-84 314.3 196 71.9
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 6.6e-84 314.3 194 72.2
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 6.6e-84 314.3 196 72.4
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 8.6e-84 313.9 196 72.4
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 2.5e-83 312.4 196 73.0
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 3.3e-83 312.0 196 71.4
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 4.3e-83 311.6 196 71.4
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 5.6e-83 311.2 196 71.4
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 5.6e-83 311.2 196 71.4
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 7.3e-83 310.8 196 73.5
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 7.3e-83 310.8 196 71.4
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 1.2e-82 310.1 196 72.4
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 1.2e-82 310.1 196 70.9
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 1.2e-82 310.1 196 72.4
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 2.1e-82 309.3 196 71.4
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 2.1e-82 309.3 196 71.4
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 3.6e-82 308.5 196 72.4
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 4.7e-82 308.1 196 70.4
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 6.2e-82 307.8 196 73.0
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 6.2e-82 307.8 196 72.4
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 8.1e-82 307.4 196 69.4
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 8.1e-82 307.4 196 71.4
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 1.1e-81 307.0 196 71.9
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 1.4e-81 306.6 196 71.4
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.8e-81 306.2 196 70.4
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 1.8e-81 306.2 197 70.6
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 1.8e-81 306.2 196 70.9
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 2.3e-81 305.8 196 71.9
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 6.8e-81 304.3 196 70.9
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 8.9e-81 303.9 196 70.4
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.5e-80 303.1 196 71.4
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 4.4e-80 301.6 196 68.4
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 7.5e-80 300.8 195 71.8
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 7.5e-80 300.8 194 72.2
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 9.9e-80 300.4 192 70.8
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 1.3e-79 300.1 196 68.4
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 8.3e-79 297.4 195 69.7
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 8.3e-79 297.4 196 69.4
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 1.1e-78 297.0 196 67.9
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.4e-78 296.6 196 71.9
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 1.4e-78 296.6 189 72.5
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 1.9e-78 296.2 196 69.4
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 2.4e-78 295.8 196 67.9
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 3.2e-78 295.4 196 68.9
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 5.4e-78 294.7 196 67.3
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 5.4e-78 294.7 196 68.9
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 7.1e-78 294.3 183 72.7
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 1.2e-77 293.5 196 68.9
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 1.6e-77 293.1 196 66.8
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 2.7e-77 292.4 196 68.4
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 3.5e-77 292.0 196 67.3
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 6.0e-77 291.2 196 67.3
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.3e-76 290.0 196 66.3
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 2.3e-76 289.3 196 67.9
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 3.0e-76 288.9 195 69.2
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 3.0e-76 288.9 196 66.8
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 3.9e-76 288.5 196 69.4
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 5.1e-76 288.1 196 66.8
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 8.6e-76 287.3 196 67.9
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.1e-75 287.0 197 66.5
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.5e-75 286.6 196 66.8
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 3.3e-75 285.4 196 69.4
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 3.3e-75 285.4 196 63.8
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 5.6e-75 284.6 196 69.4
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 5.6e-75 284.6 196 66.8
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 7.3e-75 284.3 180 71.1
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 1.2e-74 283.5 196 64.8
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 1.2e-74 283.5 196 65.3
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 1.6e-74 283.1 196 67.3
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 1.6e-74 283.1 196 65.8
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 2.1e-74 282.7 194 66.0
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 2.8e-74 282.3 196 68.4
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 3.6e-74 282.0 196 65.8
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 4.7e-74 281.6 196 66.3
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 6.2e-74 281.2 196 66.3
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 6.2e-74 281.2 191 67.5
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 8.1e-74 280.8 197 67.5
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 1.4e-73 280.0 196 67.9
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.8e-73 279.6 184 69.6
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 2.4e-73 279.3 194 65.5
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 4.0e-73 278.5 197 67.5
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 4.0e-73 278.5 194 64.9
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 4.0e-73 278.5 186 69.4
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 5.2e-73 278.1 196 64.8
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 1.2e-72 276.9 196 67.3
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.2e-72 276.9 184 69.0
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 1.2e-72 276.9 184 69.0
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 1.5e-72 276.6 198 66.7
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 2.0e-72 276.2 187 67.4
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 2.6e-72 275.8 186 68.8
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 4.4e-72 275.0 183 69.9
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 4.4e-72 275.0 196 64.8
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 5.8e-72 274.6 194 66.5
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 5.8e-72 274.6 196 63.8
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 7.6e-72 274.2 195 63.6
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 9.9e-72 273.9 196 67.9
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 1.3e-71 273.5 196 63.3
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 1.7e-71 273.1 196 66.3
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 1.7e-71 273.1 196 66.3
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 1.7e-71 273.1 186 67.7
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 6.4e-71 271.2 196 62.2
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 1.4e-70 270.0 185 68.6
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 1.2e-69 266.9 197 64.0
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 9.6e-67 257.3 197 60.4
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 3.6e-66 255.4 176 65.9
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 6.2e-66 254.6 183 65.0
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 3.1e-65 252.3 197 59.9
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 1.5e-64 250.0 183 62.3
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 3.8e-63 245.4 187 59.9
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 1.3e-60 236.9 197 56.3
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 5.1e-60 235.0 167 63.5
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 5.1e-60 235.0 162 66.0
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 3.6e-58 228.8 143 72.0
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 3.1e-57 225.7 156 65.4
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 4.0e-57 225.3 154 66.9
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 1.3e-55 220.3 144 66.7
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 2.9e-55 219.2 144 66.0
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 2.9e-55 219.2 193 53.4
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 1.1e-54 217.2 144 66.7
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 1.2e-53 213.8 187 52.9
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 7.9e-53 211.1 196 53.1
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 1.1e-49 200.7 180 51.1
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 9.3e-46 187.6 114 70.2
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 7.4e-43 177.9 196 49.0
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 1.6e-42 176.8 122 66.4
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 5.3e-41 171.8 196 46.9
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 2.0e-40 169.9 98 73.5
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 2.7e-37 159.5 188 43.6
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 1.5e-35 153.7 184 46.2
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 1.4e-30 137.1 181 39.8
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 3.4e-24 115.9 184 34.8
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 3.4e-24 115.9 83 62.7
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 5.9e-24 115.2 68 75.0
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 1.6e-21 107.1 122 45.1
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 6.1e-21 105.1 118 44.9
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 8.8e-20 101.3 186 37.1
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 2.6e-19 99.8 112 44.6
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 5.7e-19 98.6 70 62.9
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 2.2e-18 96.7 137 38.7
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 4.1e-17 92.4 64 62.5
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.9e-14 83.6 58 67.2
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 3.1e-09 66.2 40 70.0
Nn2g15094 Nelumbo nucifera HOM05D004717 ORTHO05D005636 2.2e-07 60.1 38 71.1
Dinv05788 Davidia involucrata HOM05D004717 ORTHO05D005636 2.5e-06 56.6 34 70.6


User provided reference genes

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