Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 8.6e-154 547.0 279 100.0
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 9.0e-95 350.9 269 71.0
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 2.9e-93 345.9 274 68.2
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 2.9e-93 345.9 237 75.5
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 3.8e-93 345.5 243 74.1
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 1.1e-92 344.0 242 75.6
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 1.4e-92 343.6 276 69.6
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 7.9e-91 337.8 282 66.3
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 1.8e-90 336.7 278 66.5
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 2.3e-90 336.3 278 67.6
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 1.9e-89 333.2 256 70.7
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 1.9e-89 333.2 232 75.4
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 9.6e-89 330.9 276 65.9
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 2.8e-88 329.3 289 66.1
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.8e-88 329.3 285 64.9
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 2.8e-88 329.3 276 67.0
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 3.7e-88 328.9 252 71.8
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 6.3e-88 328.2 276 65.6
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 1.1e-87 327.4 285 64.6
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.8e-87 326.6 276 65.6
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 4.1e-87 325.5 284 65.1
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 5.3e-87 325.1 216 77.8
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 5.3e-87 325.1 285 63.9
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 6.9e-87 324.7 281 64.1
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 9.0e-87 324.3 279 65.9
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 1.2e-86 323.9 261 65.1
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 3.4e-86 322.4 226 73.9
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 3.4e-86 322.4 285 63.5
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 4.5e-86 322.0 270 65.6
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 5.9e-86 321.6 229 73.8
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 5.9e-86 321.6 233 73.0
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 5.9e-86 321.6 279 65.6
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 1.3e-85 320.5 265 66.0
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.2e-85 319.7 276 64.1
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.9e-85 319.3 276 64.9
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 3.8e-85 318.9 258 67.1
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.1e-84 317.4 284 63.7
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 1.1e-84 317.4 284 62.0
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 1.9e-84 316.6 280 65.4
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 2.5e-84 316.2 267 65.5
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 2.5e-84 316.2 267 64.8
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 3.2e-84 315.8 264 65.2
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 4.2e-84 315.5 230 70.9
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 4.2e-84 315.5 293 61.4
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 5.5e-84 315.1 232 73.3
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.6e-83 312.4 268 64.6
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 4.6e-83 312.0 241 69.3
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 6.1e-83 311.6 234 70.1
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 6.1e-83 311.6 234 70.5
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 7.9e-83 311.2 279 62.0
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 7.9e-83 311.2 278 61.9
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.0e-82 310.8 260 65.0
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 1.0e-82 310.8 269 65.1
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 1.0e-82 310.8 279 62.0
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.3e-82 309.7 259 64.1
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 2.3e-82 309.7 201 78.1
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 3.0e-82 309.3 281 61.2
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 3.0e-82 309.3 266 65.0
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 6.7e-82 308.1 210 75.2
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 6.7e-82 308.1 210 74.3
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 1.5e-81 307.0 284 61.6
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 1.9e-81 306.6 217 74.2
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 1.9e-81 306.6 234 70.1
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 1.9e-81 306.6 234 70.1
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 3.3e-81 305.8 242 70.2
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 4.3e-81 305.4 202 79.2
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.3e-80 303.9 202 79.2
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 1.3e-80 303.9 202 77.7
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.2e-80 303.1 231 71.4
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 2.2e-80 303.1 210 73.8
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 3.7e-80 302.4 208 76.4
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 6.3e-80 301.6 239 70.3
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 8.2e-80 301.2 235 68.1
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 1.1e-79 300.8 238 68.1
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 1.1e-79 300.8 205 75.1
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 1.1e-79 300.8 245 64.5
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 2.4e-79 299.7 216 71.3
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 4.1e-79 298.9 230 68.3
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 4.1e-79 298.9 257 65.0
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 5.3e-79 298.5 263 65.4
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 5.3e-79 298.5 234 69.2
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 5.3e-79 298.5 245 67.8
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 9.1e-79 297.7 257 64.2
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 2.0e-78 296.6 205 73.7
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 2.0e-78 296.6 205 73.7
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 2.6e-78 296.2 225 70.7
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 2.6e-78 296.2 250 64.8
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 7.7e-78 294.7 234 69.2
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 7.7e-78 294.7 259 64.1
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 1.7e-77 293.5 211 73.5
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 2.2e-77 293.1 256 64.8
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 2.2e-77 293.1 207 73.9
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 2.2e-77 293.1 203 74.9
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 2.2e-77 293.1 225 70.2
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 2.2e-77 293.1 203 72.4
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 1.1e-76 290.8 207 73.4
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 1.1e-76 290.8 207 73.4
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 1.1e-76 290.8 211 73.0
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 3.2e-76 289.3 201 75.1
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 5.5e-76 288.5 201 73.6
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 1.6e-75 287.0 276 58.7
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.4e-74 283.9 226 68.1
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 1.8e-74 283.5 231 65.8
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 1.8e-74 283.5 220 68.6
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 5.1e-74 282.0 178 81.5
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 2.6e-73 279.6 202 70.3
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 9.7e-73 277.7 193 75.6
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 1.3e-72 277.3 186 77.4
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 4.8e-72 275.4 241 61.8
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 6.3e-72 275.0 200 71.5
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 5.3e-71 271.9 208 67.8
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.5e-70 270.4 273 56.8
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 2.0e-70 270.0 262 57.6
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 4.5e-70 268.9 200 70.5
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 4.5e-70 268.9 211 67.8
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.7e-69 266.9 198 71.7
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 1.2e-67 260.8 223 64.6
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 2.7e-67 259.6 177 75.1
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 2.3e-66 256.5 177 75.1
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 7.4e-65 251.5 179 70.9
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 1.6e-62 243.8 216 60.6
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 2.6e-62 243.0 231 60.2
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 1.3e-61 240.7 217 59.4
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 8.5e-61 238.0 184 70.7
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 4.2e-60 235.7 260 52.7
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 5.2e-58 228.8 187 66.8
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 5.2e-58 228.8 186 67.2
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 2.4e-55 219.9 165 68.5
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 2.4e-55 219.9 165 68.5
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 7.0e-55 218.4 237 54.9
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 1.2e-51 207.6 213 57.7
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 1.6e-51 207.2 267 49.4
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 3.0e-50 203.0 135 75.6
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 7.0e-47 191.8 192 58.3
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 3.2e-44 183.0 236 44.9
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 7.2e-44 181.8 197 48.2
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 4.7e-43 179.1 113 78.8
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 8.8e-42 174.9 110 76.4
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 6.1e-35 152.1 95 80.0
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 1.4e-34 151.0 216 45.8
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 4.9e-32 142.5 106 67.9
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 1.9e-28 130.6 202 40.1
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 3.6e-27 126.3 196 43.4
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 1.6e-22 110.9 230 36.5
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 3.5e-22 109.8 115 53.0
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 1.7e-21 107.5 70 75.7
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 3.9e-21 106.3 210 34.3
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 3.9e-21 106.3 205 35.1
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 1.5e-20 104.4 136 47.1
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 3.7e-16 89.7 198 35.9
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 4.9e-16 89.4 79 60.8
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 3.5e-14 83.2 113 46.9
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 3.0e-13 80.1 66 66.7
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 1.1e-10 71.6 65 60.0
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 5.8e-09 65.9 38 81.6
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 3.8e-08 63.2 71 56.3
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 2.1e-06 57.4 153 34.6


User provided reference genes

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