Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 2.0e-236 822.0 403 100.0
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 1.1e-173 613.6 407 74.2
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 7.0e-173 610.9 407 73.2
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 1.1e-170 603.6 406 71.4
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 1.1e-170 603.6 406 71.4
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.1e-169 599.4 406 73.2
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 4.7e-169 598.2 407 71.0
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.8e-168 596.3 406 72.7
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 1.2e-167 593.6 405 72.1
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 3.4e-167 592.0 407 69.8
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 5.7e-167 591.3 407 69.8
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 3.7e-166 588.6 405 71.9
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 1.1e-165 587.0 405 72.6
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 2.4e-165 585.9 406 70.9
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 4.1e-165 585.1 407 70.3
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 7.0e-165 584.3 405 71.1
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 7.0e-165 584.3 406 70.0
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.5e-164 582.0 407 70.0
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 5.9e-164 581.3 404 70.5
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 7.7e-164 580.9 408 69.4
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 7.7e-164 580.9 406 71.4
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 5.0e-163 578.2 405 69.6
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.9e-162 576.2 406 69.5
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 1.9e-162 576.2 405 69.6
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.5e-162 575.9 406 68.7
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 2.5e-162 575.9 406 69.7
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 1.6e-161 573.2 406 67.7
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 2.8e-161 572.4 405 69.9
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 4.7e-161 571.6 411 69.8
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 6.1e-161 571.2 408 68.6
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 1.8e-160 569.7 405 68.6
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 3.0e-160 568.9 407 68.8
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 6.8e-160 567.8 408 68.1
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 2.8e-158 562.4 406 67.0
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 3.7e-158 562.0 427 66.3
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 4.9e-158 561.6 409 68.0
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 6.3e-158 561.2 448 64.3
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 8.3e-158 560.8 406 70.0
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 5.4e-157 558.1 399 67.2
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 9.2e-157 557.4 406 68.0
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.6e-156 556.6 406 66.7
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 3.5e-156 555.4 405 67.9
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 1.7e-155 553.1 419 66.8
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 3.8e-155 552.0 410 66.1
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 6.6e-155 551.2 413 68.5
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 6.6e-155 551.2 406 67.2
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 2.5e-154 549.3 408 67.9
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 1.2e-153 547.0 407 66.8
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 3.6e-153 545.4 401 67.6
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.0e-152 543.9 406 66.0
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 1.0e-152 543.9 409 67.7
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 1.0e-152 543.9 410 65.6
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 1.8e-152 543.1 407 65.1
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 8.9e-152 540.8 408 66.2
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 1.2e-151 540.4 421 64.8
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 1.2e-151 540.4 407 66.8
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 1.2e-151 540.4 410 64.9
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 1.2e-151 540.4 408 65.7
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 1.5e-151 540.0 406 65.8
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 2.0e-151 539.7 409 65.8
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 3.4e-151 538.9 406 65.8
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 3.4e-151 538.9 449 62.1
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 5.7e-151 538.1 409 65.5
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 9.8e-151 537.3 406 65.0
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 1.3e-150 537.0 412 65.5
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 1.1e-149 533.9 416 64.4
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 3.2e-149 532.3 410 65.6
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 7.0e-149 531.2 406 66.7
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 1.0e-147 527.3 406 63.8
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 1.0e-147 527.3 406 63.8
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 1.0e-147 527.3 407 63.6
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 3.0e-147 525.8 409 66.0
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 3.9e-147 525.4 407 64.1
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 6.6e-147 524.6 430 63.3
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 8.6e-147 524.2 406 63.8
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 1.5e-146 523.5 406 64.8
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 4.3e-146 521.9 416 64.4
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 4.3e-146 521.9 407 63.1
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 2.8e-145 519.2 406 64.3
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 6.2e-145 518.1 402 65.2
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 2.3e-144 516.2 364 69.0
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 6.8e-144 514.6 411 63.5
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 3.4e-143 512.3 346 72.8
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.3e-142 510.4 402 63.2
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 2.2e-142 509.6 413 62.0
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 3.7e-142 508.8 484 57.0
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 3.2e-141 505.8 397 63.5
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 1.6e-140 503.4 401 63.6
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 1.6e-140 503.4 433 59.6
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 1.6e-140 503.4 433 59.6
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 5.6e-138 495.0 392 63.0
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 2.8e-137 492.7 404 60.9
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 2.0e-135 486.5 401 62.6
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 4.4e-135 485.3 369 64.8
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 7.5e-135 484.6 400 63.0
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 2.4e-133 479.6 403 60.0
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 2.1e-132 476.5 409 58.9
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 4.6e-132 475.3 399 60.2
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 4.6e-132 475.3 400 61.5
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 3.9e-131 472.2 400 60.8
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 5.1e-131 471.9 409 60.9
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 8.6e-131 471.1 404 62.9
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 1.9e-130 469.9 395 60.0
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 1.6e-129 466.8 333 68.8
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 4.7e-129 465.3 388 61.3
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 1.1e-128 464.2 403 59.3
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.4e-128 463.8 381 60.4
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.1e-125 454.1 401 60.6
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 2.1e-124 449.9 404 59.7
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 1.3e-123 447.2 404 59.4
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 3.1e-120 436.0 404 59.4
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 4.4e-119 432.2 365 58.6
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 6.4e-118 428.3 383 58.2
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 1.1e-117 427.6 360 58.6
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.2e-116 424.1 318 63.8
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 3.5e-116 422.5 406 57.9
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 1.3e-115 420.6 400 55.0
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 3.0e-115 419.5 404 54.2
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 1.1e-114 417.5 391 57.3
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 2.5e-114 416.4 400 54.5
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 2.5e-114 416.4 404 54.0
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 4.3e-114 415.6 400 54.5
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 5.6e-114 415.2 404 54.2
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 2.4e-112 409.8 395 54.2
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 3.1e-112 409.5 331 61.3
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 2.5e-106 389.8 324 59.9
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 3.3e-106 389.4 408 52.2
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 5.6e-106 388.7 385 54.5
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 5.6e-106 388.7 385 54.5
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 9.6e-106 387.9 254 73.2
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 1.3e-105 387.5 385 54.3
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.3e-102 377.5 274 65.0
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 6.7e-99 365.2 359 56.8
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 7.4e-98 361.7 262 68.7
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 3.4e-95 352.8 340 56.5
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 3.8e-94 349.4 393 48.9
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 9.3e-93 344.7 340 56.2
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.6e-92 342.4 264 62.5
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 9.0e-88 328.2 275 58.2
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 2.6e-87 326.6 408 45.6
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 3.4e-87 326.2 264 62.1
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 7.6e-87 325.1 254 60.2
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 1.0e-86 324.7 401 45.1
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 5.5e-85 318.9 229 65.9
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 1.2e-84 317.8 412 44.4
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 1.3e-81 307.8 256 60.2
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 1.5e-79 300.8 406 42.9
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 3.0e-75 286.6 365 47.1
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 4.8e-73 279.3 283 53.4
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 7.7e-63 245.4 194 60.8
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.4e-59 234.6 158 70.3
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 1.2e-58 231.5 443 35.2
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 8.6e-46 188.7 365 35.9
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 4.9e-41 172.9 136 65.4
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 2.7e-39 167.2 130 69.2
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 4.5e-39 166.4 126 68.3
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 3.8e-38 163.3 330 32.4
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.8e-35 154.5 98 69.4
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 1.3e-33 148.3 301 34.9
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 1.3e-33 148.3 126 59.5
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 1.1e-32 145.2 301 34.2
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 4.6e-31 139.8 317 30.0
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 2.3e-30 137.5 326 32.2
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 7.8e-23 112.5 67 80.6
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 1.1e-19 102.1 68 63.2
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 4.0e-19 100.1 123 43.1
CARHR204860 Cardamine hirsuta HOM05D003933 ORTHO05D004746 2.2e-17 94.4 61 70.5
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 1.2e-15 88.6 121 43.8
PGSC0003DMG401019957 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.1e-13 82.0 74 52.7
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 2.4e-11 74.3 48 70.8
Psat7g177720 Pisum sativum HOM05D003933 ORTHO05D004746 4.0e-11 73.6 44 84.1
BcaC03g13212 Brassica carinata HOM05D003933 ORTHO05D004746 3.4e-10 70.5 130 36.2
COL.COLO4_20881 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.9e-08 64.7 63 52.4


User provided reference genes

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