Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 2.7e-256 888.3 478 100.0
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 8.0e-168 594.3 481 66.9
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 1.1e-161 573.9 479 66.6
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 1.2e-160 570.5 476 65.5
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 1.0e-159 567.4 480 65.6
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 2.6e-158 562.8 479 65.1
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 7.5e-158 561.2 482 64.9
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 2.2e-157 559.7 505 63.2
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 7.8e-155 551.2 480 66.9
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 1.3e-154 550.4 482 63.1
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 5.6e-153 545.0 478 63.6
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 2.1e-152 543.1 493 63.9
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 6.2e-152 541.6 481 62.8
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 1.1e-151 540.8 484 63.8
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 8.9e-151 537.7 476 60.3
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 4.4e-150 535.4 489 63.8
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 9.8e-150 534.3 486 62.1
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 1.7e-149 533.5 481 65.3
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 2.9e-149 532.7 478 63.8
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 8.3e-149 531.2 492 61.2
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 8.3e-149 531.2 492 61.2
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 1.9e-148 530.0 482 60.2
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 1.9e-148 530.0 483 64.8
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 1.2e-147 527.3 488 61.9
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 1.6e-147 526.9 482 59.8
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 2.7e-147 526.2 484 63.8
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 7.8e-147 524.6 481 60.5
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 1.3e-146 523.9 478 61.7
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 1.3e-146 523.9 488 62.9
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 1.7e-146 523.5 477 60.8
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 8.6e-146 521.2 480 60.4
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 1.1e-145 520.8 484 62.0
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 1.1e-145 520.8 478 59.8
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 7.3e-145 518.1 476 60.3
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.1e-144 516.5 477 61.4
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 6.2e-144 515.0 484 61.8
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 6.2e-144 515.0 477 60.4
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.1e-143 514.2 481 62.4
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 1.4e-143 513.8 481 60.9
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 1.8e-143 513.5 480 60.8
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 2.3e-143 513.1 479 62.4
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 2.3e-143 513.1 487 62.2
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 2.0e-142 510.0 482 61.8
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 7.6e-142 508.1 487 58.1
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 9.9e-142 507.7 487 60.0
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 1.7e-141 506.9 485 61.9
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 2.2e-141 506.5 477 59.7
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 2.9e-141 506.1 481 61.7
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.9e-141 506.1 486 59.1
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 3.7e-141 505.8 481 61.7
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 4.9e-141 505.4 480 61.0
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 4.9e-141 505.4 477 59.3
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 8.4e-141 504.6 482 58.5
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 8.4e-141 504.6 485 61.6
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 1.9e-140 503.4 482 62.4
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 1.9e-140 503.4 476 59.0
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 5.4e-140 501.9 481 59.3
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 7.1e-140 501.5 483 58.6
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 1.2e-139 500.7 483 60.9
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 2.7e-139 499.6 498 59.2
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 4.6e-139 498.8 479 57.8
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 4.6e-139 498.8 480 59.8
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 2.3e-138 496.5 481 60.7
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 5.1e-138 495.4 500 57.4
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 7.3e-137 491.5 479 58.9
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 9.6e-137 491.1 480 59.2
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 9.6e-137 491.1 479 59.1
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 1.6e-136 490.3 515 55.0
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 4.7e-136 488.8 479 55.7
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 4.7e-136 488.8 505 57.8
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 8.1e-136 488.0 483 56.5
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 8.1e-136 488.0 481 59.9
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 1.1e-135 487.6 480 59.6
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 1.4e-135 487.3 483 57.6
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 1.8e-135 486.9 479 60.3
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 3.1e-135 486.1 480 59.6
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 5.2e-135 485.3 478 57.9
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 8.9e-135 484.6 479 57.0
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 1.2e-134 484.2 479 60.1
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 2.0e-134 483.4 483 59.4
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 2.6e-134 483.0 491 57.6
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 2.2e-133 479.9 502 58.0
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 6.4e-133 478.4 478 59.8
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 1.1e-132 477.6 479 57.6
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 1.7e-130 470.3 522 54.4
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 1.7e-130 470.3 487 58.1
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 2.5e-129 466.5 468 57.1
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 3.3e-129 466.1 478 56.5
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 5.8e-126 455.3 400 64.0
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 1.3e-125 454.1 428 60.7
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 2.9e-125 453.0 480 55.2
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 1.4e-124 450.7 481 56.3
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 1.2e-118 431.0 487 52.4
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 2.6e-118 429.9 434 59.2
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 2.6e-118 429.9 500 50.6
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 2.2e-117 426.8 480 51.7
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 8.4e-117 424.9 480 51.5
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 1.0e-114 417.9 412 59.7
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.8e-114 417.2 407 58.5
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 7.4e-113 411.8 482 51.5
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 3.7e-112 409.5 408 59.6
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 3.8e-109 399.4 480 53.1
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 1.3e-96 357.8 501 47.1
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 4.1e-95 352.8 334 56.6
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 1.9e-92 344.0 480 47.7
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 2.2e-88 330.5 479 44.5
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 6.5e-85 318.9 432 46.8
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 1.5e-81 307.8 400 47.0
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 7.5e-73 278.9 186 74.7
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 1.8e-71 274.2 479 40.3
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 9.1e-71 271.9 318 50.9
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 1.5e-65 254.6 315 49.5
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 4.1e-63 246.5 323 49.2
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 7.0e-63 245.7 229 60.3
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 1.1e-60 238.4 222 57.7
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 5.5e-60 236.1 226 56.6
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 7.2e-60 235.7 238 55.5
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 4.4e-57 226.5 356 40.2
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 1.8e-50 204.5 320 43.1
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 4.6e-46 189.9 327 37.0
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.2e-41 175.3 152 63.8
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 1.2e-41 175.3 241 43.6
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 8.9e-34 149.1 155 49.0
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 4.0e-26 123.6 191 44.0
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 8.9e-26 122.5 137 50.4
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 4.9e-24 116.7 177 50.3
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 8.6e-21 105.9 112 55.4
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 2.8e-19 100.9 324 29.0
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 4.7e-19 100.1 94 54.3
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 3.8e-16 90.5 108 49.1
Aqoxy4G01147 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 1.3e-08 65.5 54 72.2
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 2.9e-08 64.3 127 32.3
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.9e-08 64.3 131 32.1
Cre02.g116650 Chlamydomonas reinhardtii HOM05D034198 ORTHO05D034480 2.9e-08 64.3 145 29.7
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 4.9e-08 63.5 131 30.5
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 4.9e-08 63.5 125 33.6
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 8.4e-08 62.8 130 33.1
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.4e-07 62.0 133 30.8
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 1.9e-07 61.6 133 31.6
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.2e-07 60.8 171 28.7
CBR_g685 Chara braunii HOM05D002747 ORTHO05D003069 3.2e-07 60.8 60 46.7
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 5.4e-07 60.1 134 31.3
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 7.1e-07 59.7 128 33.6
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 7.1e-07 59.7 133 31.6
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 9.3e-07 59.3 130 30.8
Aa31sc37G10 Aethionema arabicum HOM05D002747 ORTHO05D003069 1.2e-06 58.9 55 47.3
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.2e-06 58.9 131 32.8
COL.COLO4_15646 Corchorus olitorius HOM05D002747 ORTHO05D003069 1.6e-06 58.5 81 38.3
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 1.6e-06 58.5 125 35.2
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 1.6e-06 58.5 163 26.4
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 2.1e-06 58.2 130 30.0
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 2.1e-06 58.2 128 30.5
Zm00001eb175040 Zea mays HOM05D002747 ORTHO05D003069 2.1e-06 58.2 48 50.0
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.5e-06 57.4 130 32.3
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 4.6e-06 57.0 133 30.1
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 4.6e-06 57.0 129 28.7
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 4.6e-06 57.0 132 29.5
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 6.0e-06 56.6 133 30.8
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 6.0e-06 56.6 154 27.9
Sabra02G0186000 Salix brachista HOM05D002747 ORTHO05D003069 6.0e-06 56.6 58 43.1
GSVIVG01003278001 Vitis vinifera HOM05D002747 ORTHO05D003069 6.0e-06 56.6 56 46.4
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 7.9e-06 56.2 163 30.1
CANSAT01G0798 Cannabis sativa HOM05D002747 ORTHO05D003069 7.9e-06 56.2 53 47.2
CANSAT01G2415 Cannabis sativa HOM05D002747 ORTHO05D003069 7.9e-06 56.2 53 47.2
THA.LOC104802663 Tarenaya hassleriana HOM05D002747 ORTHO05D003069 7.9e-06 56.2 62 40.3
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 7.9e-06 56.2 122 27.0


User provided reference genes

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