Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G4187 Punica granatum HOM05D007714 ORTHO05D009659 2.0e-55 219.2 135 100.0
CANSAT25G2935 Cannabis sativa HOM05D007714 ORTHO05D009659 2.0e-31 139.4 138 52.2
Eucgr.G01755 Eucalyptus grandis HOM05D007714 ORTHO05D009659 7.6e-31 137.5 128 57.8
DCAR_003697 Daucus carota HOM05D007714 ORTHO05D009659 2.4e-29 132.5 130 53.1
QL11p047512 Quercus lobata HOM05D007714 ORTHO05D009659 2.4e-29 132.5 129 53.5
TWI31G1253 Tripterygium wilfordii HOM05D007714 ORTHO05D009659 5.4e-29 131.3 136 52.2
Cpa.g.sc17.154 Carica papaya HOM05D007714 ORTHO05D009659 2.7e-28 129.0 135 51.9
MSTRG.16861 Avicennia marina HOM05D007714 ORTHO05D009659 3.5e-28 128.6 129 62.0
Lj3g0018720 Lotus japonicus HOM05D007714 ORTHO05D009659 3.5e-28 128.6 133 48.9
Oeu055640.1 Olea europaea HOM05D007714 ORTHO05D009659 1.0e-27 127.1 127 52.8
Glyma.12G024200 Glycine max HOM05D007714 ORTHO05D009659 1.7e-27 126.3 127 51.2
Manes.11G089800 Manihot esculenta HOM05D007714 ORTHO05D009659 1.7e-27 126.3 138 51.4
Psat7g178400 Pisum sativum HOM05D007714 ORTHO05D009659 3.0e-27 125.6 136 50.0
Eucgr.I01373 Eucalyptus grandis HOM05D007714 ORTHO05D009659 5.1e-27 124.8 130 53.1
Potri.004G167700 Populus trichocarpa HOM05D007714 ORTHO05D009659 5.1e-27 124.8 135 48.9
VMungo1127G1113 Vigna mungo HOM05D007714 ORTHO05D009659 5.1e-27 124.8 130 50.8
Manes.04G078500 Manihot esculenta HOM05D007714 ORTHO05D009659 8.7e-27 124.0 138 50.7
arahy.Tifrunner.gnm1.ann1.IKIS5S Arachis hypogaea HOM05D007714 ORTHO05D009659 1.1e-26 123.6 131 48.9
Sabra04G0112500 Salix brachista HOM05D007714 ORTHO05D009659 1.5e-26 123.2 132 48.5
TPR.G17178 Trifolium pratense HOM05D007714 ORTHO05D009659 1.5e-26 123.2 123 51.2
Atru.BG.72.p Acer truncatum HOM05D007714 ORTHO05D009659 1.9e-26 122.9 118 53.4
VMungo1309G2628 Vigna mungo HOM05D007714 ORTHO05D009659 1.9e-26 122.9 127 48.0
BraA09t41234Z Brassica rapa HOM05D007714 ORTHO05D009659 3.3e-26 122.1 126 51.6
AT2G21180 Arabidopsis thaliana HOM05D007714 ORTHO05D009659 4.3e-26 121.7 131 51.1
Medtr4g075500 Medicago truncatula HOM05D007714 ORTHO05D009659 4.3e-26 121.7 120 50.8
BcaC07g41170 Brassica carinata HOM05D007714 ORTHO05D009659 9.6e-26 120.6 126 50.8
A09p58470 Brassica napus HOM05D007714 ORTHO05D009659 9.6e-26 120.6 126 50.8
C08p41770 Brassica napus HOM05D007714 ORTHO05D009659 9.6e-26 120.6 126 50.8
Carub.0004s0020 Capsella rubella HOM05D007714 ORTHO05D009659 1.3e-25 120.2 134 50.7
Thecc.02G067300 Theobroma cacao HOM05D007714 ORTHO05D009659 2.1e-25 119.4 138 50.0
CiPaw.05G076900 Carya illinoinensis HOM05D007714 ORTHO05D009659 2.8e-25 119.0 128 48.4
Glyma.04G005500 Glycine max HOM05D007714 ORTHO05D009659 2.8e-25 119.0 127 46.5
Duzib052G0442 Durio zibethinus HOM05D007714 ORTHO05D009659 3.6e-25 118.6 138 50.0
BolC8t51740H Brassica oleracea HOM05D007714 ORTHO05D009659 8.1e-25 117.5 126 50.0
AL4G10270 Arabidopsis lyrata HOM05D007714 ORTHO05D009659 1.1e-24 117.1 123 51.2
BcaB08g34968 Brassica carinata HOM05D007714 ORTHO05D009659 1.4e-24 116.7 126 49.2
Ciclev10029583m.g Citrus clementina HOM05D007714 ORTHO05D009659 1.4e-24 116.7 123 49.6
Gohir.D12G032900 Gossypium hirsutum HOM05D007714 ORTHO05D009659 1.4e-24 116.7 138 48.6
Gorai.008G033700 Gossypium raimondii HOM05D007714 ORTHO05D009659 1.4e-24 116.7 138 48.6
Nn5g30143 Nelumbo nucifera HOM05D007714 ORTHO05D009659 1.4e-24 116.7 128 46.9
Duzib132G1133 Durio zibethinus HOM05D007714 ORTHO05D009659 1.8e-24 116.3 135 48.1
MBI09_g26111_MAGBIO Magnolia biondii HOM05D003064 ORTHO05D009659 1.8e-24 116.3 132 44.7
COL.COLO4_17252 Corchorus olitorius HOM05D007714 ORTHO05D009659 3.1e-24 115.5 138 47.1
Migut.B00165 Erythranthe guttata HOM05D007714 ORTHO05D009659 4.0e-24 115.2 133 46.6
Gohir.A12G039500 Gossypium hirsutum HOM05D007714 ORTHO05D009659 4.0e-24 115.2 138 47.8
Duzib248G0871 Durio zibethinus HOM05D007714 ORTHO05D009659 5.3e-24 114.8 138 48.6
RcHm_v2.0_Chr6g0245291 Rosa chinensis HOM05D007714 ORTHO05D009659 6.9e-24 114.4 128 49.2
THA.LOC104824780 Tarenaya hassleriana HOM05D007714 ORTHO05D009659 1.2e-23 113.6 130 52.3
Thhalv10000371m.g Eutrema salsugineum HOM05D007714 ORTHO05D009659 1.5e-23 113.2 131 52.7
SalBow6G4832 Salvia bowleyana HOM05D007714 ORTHO05D009659 1.5e-23 113.2 130 46.2
Phvul.009G000200 Phaseolus vulgaris HOM05D007714 ORTHO05D009659 2.0e-23 112.8 126 44.4
FAN27G1210 Fragaria x ananassa HOM05D007714 ORTHO05D009659 2.6e-23 112.5 128 46.9
FAN20G3219 Fragaria x ananassa HOM05D007714 ORTHO05D009659 7.6e-23 110.9 131 47.3
Aa31LG7G15510 Aethionema arabicum HOM05D007714 ORTHO05D009659 9.9e-23 110.5 126 45.2
MD05G1115400 Malus domestica HOM05D007714 ORTHO05D009659 1.3e-22 110.2 138 48.6
Hma1.2p1_1385F.1_g279720 Hydrangea macrophylla HOM05D007714 ORTHO05D009659 1.7e-22 109.8 128 43.8
Lsat_1_v5_gn_8_125840 Lactuca sativa HOM05D007714 ORTHO05D009659 1.7e-22 109.8 127 43.3
FvH4_2g02061 Fragaria vesca HOM05D007714 ORTHO05D009659 3.8e-22 108.6 125 47.2
CsaV3_7G000790 Cucumis sativus L. HOM05D007714 ORTHO05D009659 6.4e-22 107.8 130 46.9
Haze_02201 Corylus avellana HOM05D007714 ORTHO05D009659 1.9e-21 106.3 88 60.2
Rhsim11G0187600 Rhododendron simsii HOM05D007714 ORTHO05D009659 5.4e-21 104.8 125 43.2
Gohir.D01G155601 Gossypium hirsutum HOM05D007714 ORTHO05D009659 7.1e-21 104.4 121 46.3
Gorai.002G192800 Gossypium raimondii HOM05D007714 ORTHO05D009659 7.1e-21 104.4 121 46.3
SGA_v2.0_scaffold58G20452 Striga asiatica HOM05D007714 ORTHO05D009659 9.3e-21 104.0 130 52.3
Aqoxy6G02058 Aquilegia oxysepala HOM05D007714 ORTHO05D009659 1.6e-20 103.2 130 46.9
ClCG02G004310 Citrullus lanatus HOM05D007714 ORTHO05D009659 1.6e-20 103.2 123 47.2
Sed0013832 Sechium edule HOM05D007714 ORTHO05D009659 2.7e-20 102.4 131 45.0
Prupe.8G160200 Prunus persica HOM05D007714 ORTHO05D009659 3.5e-20 102.1 127 45.7
Sp4g00330 Schrenkiella parvula HOM05D007714 ORTHO05D009659 4.6e-20 101.7 129 64.3
HanXRQChr17g0553681 Helianthus annuus HOM05D007714 ORTHO05D009659 1.3e-19 100.1 122 41.8
Prupe.8G160100 Prunus persica HOM05D007714 ORTHO05D009659 2.3e-19 99.4 126 46.0
MD10G1117900 Malus domestica HOM05D007714 ORTHO05D009659 6.7e-19 97.8 135 44.4
FAN20G0376 Fragaria x ananassa HOM05D007714 ORTHO05D009659 7.4e-18 94.4 107 49.5
FAN24G2861 Fragaria x ananassa HOM05D003332 ORTHO05D009659 9.6e-18 94.0 107 49.5
Zm00001eb398560 Zea mays HOM05D007714 ORTHO05D009659 2.8e-17 92.4 131 33.6
Potri.009G129200 Populus trichocarpa HOM05D007714 ORTHO05D009659 1.8e-16 89.7 129 41.1
Os03g0249700 Oryza sativa ssp. japonica HOM05D007714 ORTHO05D009659 3.1e-16 89.0 135 37.0
HPP92_020971 Vanilla planifolia HOM05D007714 ORTHO05D009659 3.1e-16 89.0 130 43.8
Ciclev10029987m.g Citrus clementina HOM05D007714 ORTHO05D009659 6.9e-16 87.8 124 42.7
ATR1042G001 Amborella trichopoda HOM05D003064 ORTHO05D009659 1.7e-14 83.2 119 41.2
Hma1.2p1_1385F.1_g279730 Hydrangea macrophylla HOM05D007714 ORTHO05D009659 7.1e-13 77.8 128 39.1
Ca_18998_v3 Cicer arietinum L. HOM05D007714 ORTHO05D009659 2.3e-11 72.8 43 74.4
Solyc01g111110.3 Solanum lycopersicum HOM05D007714 ORTHO05D009659 2.3e-11 72.8 87 41.4
Sopen01g053170 Solanum pennellii HOM05D007714 ORTHO05D009659 2.3e-11 72.8 87 41.4
PGSC0003DMG400001634 Solanum tuberosum HOM05D007714 ORTHO05D009659 2.3e-11 72.8 87 41.4
EL10Ac9g21449 Beta vulgaris HOM05D007714 ORTHO05D009659 5.1e-11 71.6 79 46.8
Gohir.A01G163500 Gossypium hirsutum HOM05D007714 ORTHO05D009659 2.5e-10 69.3 91 41.8
Actinidia20484 Actinidia chinensis HOM05D007714 ORTHO05D009659 2.8e-09 65.9 86 39.5
ATR0598G068 Amborella trichopoda HOM05D003064 ORTHO05D001733 3.7e-09 65.5 135 34.1
Glyma.06G005200 Glycine max HOM05D007714 ORTHO05D009659 3.7e-09 65.5 74 44.6
Zm00001eb438760 Zea mays HOM05D007714 ORTHO05D009659 1.1e-08 63.9 68 39.7
TAR369G0713 Trochodendron aralioides HOM05D003064 ORTHO05D001733 1.4e-08 63.5 111 35.1
Aqoxy1G00039 Aquilegia oxysepala HOM05D003064 ORTHO05D001733 5.3e-08 61.6 112 31.2
TWI38G0681 Tripterygium wilfordii HOM05D003064 ORTHO05D001733 5.3e-08 61.6 111 33.3
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 6.9e-08 61.2 113 36.3
Oeu060706.1 Olea europaea HOM05D003064 ORTHO05D001733 6.9e-08 61.2 110 30.9
Lsat_1_v5_gn_6_50860 Lactuca sativa HOM05D003064 ORTHO05D001733 9.0e-08 60.8 133 33.1
Os09g0445600 Oryza sativa ssp. japonica HOM05D003064 ORTHO05D001733 1.5e-07 60.1 138 34.8
Atru.chr11.2712 Acer truncatum HOM05D003064 ORTHO05D001733 3.4e-07 58.9 111 31.5
Peaxi162Scf00362g01024 Petunia axillaris HOM05D007714 ORTHO05D009659 3.4e-07 58.9 87 39.1
HanXRQChr02g0056621 Helianthus annuus HOM05D003064 ORTHO05D001733 4.5e-07 58.5 110 33.6
TAR633G1282 Trochodendron aralioides HOM05D003064 ORTHO05D001733 4.5e-07 58.5 111 31.5
MSTRG.17073 Avicennia marina HOM05D003064 ORTHO05D001733 5.8e-07 58.2 113 29.2
GSVIVG01001351001 Vitis vinifera HOM05D003064 ORTHO05D001733 5.8e-07 58.2 110 30.0
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 1.3e-06 57.0 143 30.8
Zm00001eb314350 Zea mays HOM05D003064 ORTHO05D001733 1.3e-06 57.0 111 34.2
CsaV3_7G031520 Cucumis sativus L. HOM05D003064 ORTHO05D001733 1.7e-06 56.6 108 32.4
Gohir.D08G022500 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.7e-06 56.6 112 34.8
Gorai.004G017800 Gossypium raimondii HOM05D003064 ORTHO05D001733 1.7e-06 56.6 112 34.8
FAN25G3035 Fragaria x ananassa HOM05D003064 ORTHO05D001733 2.2e-06 56.2 133 30.1
Gohir.A08G012000 Gossypium hirsutum HOM05D003064 ORTHO05D001733 2.2e-06 56.2 112 34.8
Manes.10G152800 Manihot esculenta HOM05D003064 ORTHO05D001733 2.9e-06 55.8 112 29.5
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 2.9e-06 55.8 136 30.9
Cfa002739 Carpinus fangiana HOM05D027682 ORTHO05D028596 3.8e-06 55.5 117 33.3
ClCG09G003670 Citrullus lanatus HOM05D003064 ORTHO05D001733 3.8e-06 55.5 108 31.5
PGR119G0056 Punica granatum HOM05D003064 ORTHO05D001733 4.9e-06 55.1 100 36.0
Sed0014538 Sechium edule HOM05D003064 ORTHO05D001733 4.9e-06 55.1 99 32.3
HanXRQChr17g0564171 Helianthus annuus HOM05D003064 ORTHO05D001733 8.4e-06 54.3 111 28.8
PSO339G6128 Papaver somniferum HOM05D003064 ORTHO05D001733 8.4e-06 54.3 112 32.1
PSO384G3054 Papaver somniferum HOM05D003064 ORTHO05D001733 8.4e-06 54.3 112 32.1
RcHm_v2.0_Chr6g0245271 Rosa chinensis HOM05D005726 ORTHO05D001733 8.4e-06 54.3 138 31.9


User provided reference genes

Program Settings