Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 1.5e-182 642.9 376 100.0
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 7.0e-159 564.3 372 82.0
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 2.7e-158 562.4 372 82.0
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 2.9e-157 558.9 372 81.2
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 6.5e-157 557.8 374 81.8
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 6.5e-157 557.8 382 79.3
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 8.5e-157 557.4 373 80.7
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 8.5e-157 557.4 372 81.7
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 8.5e-157 557.4 372 81.5
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 4.2e-156 555.1 359 83.8
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 5.5e-156 554.7 372 80.1
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 1.2e-155 553.5 372 80.9
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 1.6e-155 553.1 372 80.4
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 2.7e-155 552.4 372 80.9
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 2.7e-155 552.4 372 80.4
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 3.6e-155 552.0 383 78.3
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 1.4e-154 550.1 382 79.3
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 1.8e-154 549.7 372 80.6
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 2.3e-154 549.3 368 81.5
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 3.0e-154 548.9 366 82.0
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 3.0e-154 548.9 372 79.0
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 3.0e-154 548.9 373 79.4
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 1.2e-153 547.0 372 80.4
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 3.4e-153 545.4 382 77.7
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 2.2e-152 542.7 382 78.0
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 4.9e-152 541.6 382 78.3
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 6.3e-152 541.2 370 81.1
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 1.1e-151 540.4 382 75.9
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 7.0e-151 537.7 365 79.5
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 7.0e-151 537.7 370 78.6
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 9.1e-151 537.3 373 77.7
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 1.6e-150 536.6 372 79.0
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 3.5e-150 535.4 382 76.2
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 4.5e-150 535.0 372 79.3
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 1.0e-149 533.9 382 77.2
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 1.3e-149 533.5 372 79.0
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 6.6e-149 531.2 374 78.6
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 9.5e-148 527.3 383 76.8
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 1.8e-146 523.1 371 77.1
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 5.2e-146 521.5 367 77.4
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 3.7e-144 515.4 362 77.3
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 1.1e-143 513.8 382 74.9
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 7.0e-143 511.1 354 78.0
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 9.2e-143 510.8 378 74.6
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 9.2e-143 510.8 372 77.2
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 2.0e-142 509.6 365 76.2
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 1.3e-141 506.9 366 75.7
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 3.3e-140 502.3 363 75.5
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 7.3e-140 501.1 350 77.4
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 6.1e-139 498.0 369 73.7
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 6.1e-139 498.0 386 72.0
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 2.3e-138 496.1 370 74.6
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 3.1e-138 495.7 366 74.6
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 4.0e-138 495.4 386 71.8
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 7.5e-137 491.1 382 78.0
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 1.7e-136 490.0 366 73.5
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 2.2e-136 489.6 346 76.0
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 4.9e-136 488.4 344 77.6
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 6.4e-136 488.0 367 72.2
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 6.4e-136 488.0 370 72.4
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 1.4e-135 486.9 368 73.4
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 1.2e-134 483.8 369 72.6
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 6.0e-134 481.5 351 75.2
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 7.8e-134 481.1 369 71.5
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.0e-133 480.7 403 68.5
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 1.3e-133 480.3 376 72.1
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 1.7e-133 479.9 382 69.4
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 2.3e-133 479.6 363 73.0
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 6.6e-133 478.0 368 72.6
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 8.6e-133 477.6 365 72.3
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 1.5e-132 476.9 363 72.7
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 1.9e-132 476.5 410 66.8
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 1.6e-131 473.4 367 71.4
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 1.6e-131 473.4 367 71.4
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 2.1e-131 473.0 363 71.1
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 1.1e-130 470.7 358 71.8
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 1.8e-130 469.9 367 70.0
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 1.8e-130 469.9 374 70.1
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 4.0e-130 468.8 384 69.0
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 5.2e-130 468.4 369 70.2
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 2.0e-129 466.5 369 70.5
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 2.0e-129 466.5 354 72.9
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.6e-129 466.1 379 70.4
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 7.5e-129 464.5 343 74.3
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 1.3e-128 463.8 367 68.9
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 2.9e-128 462.6 371 68.7
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 4.9e-128 461.8 367 69.8
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 8.3e-128 461.1 342 74.0
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 1.4e-127 460.3 342 74.0
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 4.1e-127 458.8 374 67.6
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 7.1e-127 458.0 368 70.1
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 2.7e-126 456.1 355 69.9
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 8.6e-125 451.1 346 74.3
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.1e-124 450.7 350 71.1
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 9.5e-124 447.6 364 69.5
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 9.5e-124 447.6 360 69.2
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 1.2e-123 447.2 346 70.8
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 1.6e-123 446.8 355 70.7
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 4.7e-123 445.3 364 68.4
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 1.4e-122 443.7 368 67.9
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 4.0e-122 442.2 352 68.8
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 2.6e-121 439.5 315 79.4
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 4.4e-121 438.7 375 66.4
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 3.7e-120 435.6 318 74.2
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 6.4e-120 434.9 365 68.2
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.6e-118 430.3 360 67.2
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 3.5e-118 429.1 268 86.9
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 1.3e-117 427.2 371 66.8
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 2.3e-117 426.4 360 67.2
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 6.6e-117 424.9 346 68.2
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 1.9e-116 423.3 364 65.7
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 5.6e-116 421.8 363 65.8
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 5.6e-116 421.8 342 69.3
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 2.1e-115 419.9 346 67.6
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 2.1e-115 419.9 346 67.6
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 2.8e-115 419.5 358 64.0
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.6e-113 412.9 286 79.0
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 1.3e-112 410.6 353 64.0
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.2e-111 406.0 345 62.9
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 7.1e-111 404.8 353 65.2
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 1.0e-109 401.0 267 81.3
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 3.6e-107 392.5 362 67.1
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.4e-106 390.6 307 66.8
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 9.0e-106 387.9 349 59.3
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 2.0e-105 386.7 308 72.1
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 3.4e-105 386.0 304 73.0
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 2.9e-104 382.9 379 60.7
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 6.4e-104 381.7 368 57.6
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 5.3e-98 362.1 292 71.2
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 1.5e-97 360.5 367 58.9
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.3e-96 357.5 361 54.0
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 2.9e-96 356.3 329 59.6
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 2.3e-93 346.7 356 53.1
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 6.7e-93 345.1 286 68.5
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 4.3e-92 342.4 272 70.6
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 9.6e-84 314.7 218 78.9
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 3.4e-81 306.2 346 51.4
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.4e-79 300.8 225 76.0
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 1.8e-53 214.2 172 68.0
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 4.1e-50 203.0 131 84.7
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 6.1e-46 189.1 142 71.8
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 1.4e-29 134.8 138 57.2
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 2.6e-28 130.6 119 59.7
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 3.7e-27 126.7 70 85.7
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 3.7e-27 126.7 79 78.5
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 3.2e-26 123.6 81 84.0
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.0e-25 120.9 117 58.1
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 3.5e-25 120.2 116 59.5
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.3e-24 117.5 98 57.1
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.9e-18 97.8 130 50.0
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 7.8e-17 92.4 62 71.0
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 6.6e-16 89.4 105 47.6
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 5.6e-15 86.3 93 55.9
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 7.3e-15 85.9 74 56.8
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 6.8e-13 79.3 97 52.6
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 5.8e-12 76.3 42 88.1
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 7.5e-12 75.9 56 67.9
PRCOL_00002192 Prasinoderma coloniale HOM05D004327 ORTHO05D005032 1.4e-10 71.6 249 27.7
MCO09G810 Micromonas commoda HOM05D004327 ORTHO05D005032 1.7e-08 64.7 163 28.8


User provided reference genes

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