Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 1.6e-205 719.2 348 100.0
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 1.8e-140 503.1 348 68.1
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 3.0e-140 502.3 348 68.1
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 2.0e-139 499.6 348 67.5
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 2.6e-139 499.2 348 68.1
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 2.4e-137 492.7 350 68.6
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 9.1e-137 490.7 346 67.3
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 4.2e-134 481.9 346 66.5
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 4.2e-134 481.9 346 66.8
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 5.5e-134 481.5 346 66.8
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 7.2e-134 481.1 346 64.2
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 1.2e-133 480.3 346 64.7
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.6e-133 479.9 346 66.2
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 4.0e-132 475.3 348 64.9
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 8.8e-132 474.2 348 65.5
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 2.0e-131 473.0 348 63.5
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 2.6e-131 472.6 348 65.8
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 4.4e-131 471.9 347 64.8
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 2.2e-130 469.5 348 63.8
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 5.3e-129 464.9 348 62.4
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 1.6e-128 463.4 352 63.1
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 5.9e-128 461.5 348 62.6
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 2.2e-127 459.5 336 64.6
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 2.9e-127 459.1 345 62.9
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 5.0e-127 458.4 349 62.5
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 2.5e-126 456.1 352 61.4
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 3.2e-126 455.7 349 62.5
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 3.2e-126 455.7 349 62.5
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 5.5e-126 454.9 347 61.1
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 1.2e-125 453.8 340 63.2
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 6.1e-125 451.4 345 61.7
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 1.0e-124 450.7 345 60.9
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 5.2e-124 448.4 336 63.4
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 5.7e-123 444.9 350 58.9
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 9.8e-123 444.1 352 60.5
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 1.7e-122 443.4 349 59.6
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 1.7e-122 443.4 335 61.8
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 2.2e-122 443.0 348 58.9
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 3.7e-122 442.2 365 59.2
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.1e-121 440.7 328 62.2
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 1.8e-121 439.9 341 61.3
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 1.6e-120 436.8 365 58.6
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 2.0e-120 436.4 346 58.7
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 7.7e-120 434.5 349 59.3
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 1.0e-119 434.1 329 62.3
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 2.9e-119 432.6 358 57.5
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 5.0e-119 431.8 348 57.5
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 1.1e-118 430.6 348 60.9
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 2.5e-118 429.5 333 58.6
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 2.5e-118 429.5 341 57.8
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 2.5e-118 429.5 359 57.4
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 2.5e-118 429.5 315 62.5
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 5.5e-118 428.3 301 65.8
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 2.1e-117 426.4 322 60.2
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 2.1e-117 426.4 349 57.3
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 2.7e-117 426.0 363 57.3
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 4.7e-117 425.2 335 57.3
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 4.7e-117 425.2 338 58.6
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 6.1e-117 424.9 338 59.8
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 1.4e-116 423.7 304 63.5
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 1.4e-116 423.7 338 59.5
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 1.8e-116 423.3 348 55.7
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 1.8e-116 423.3 328 58.5
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 2.3e-116 422.9 308 64.9
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 4.0e-116 422.2 354 58.2
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 1.5e-115 420.2 328 58.2
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 3.4e-115 419.1 336 60.7
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 4.4e-115 418.7 333 59.5
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 5.7e-115 418.3 329 59.0
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 1.3e-114 417.2 340 57.9
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 6.3e-114 414.8 341 58.9
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 1.1e-113 414.1 335 59.1
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 2.4e-113 412.9 333 58.0
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 3.8e-111 405.6 329 56.5
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 2.5e-110 402.9 280 66.8
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 7.3e-110 401.4 347 57.1
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 1.6e-109 400.2 347 57.1
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 2.8e-109 399.4 333 55.9
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 8.9e-108 394.4 331 57.7
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 7.5e-107 391.3 340 53.8
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 3.7e-106 389.0 286 62.6
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 4.1e-105 385.6 350 53.7
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 4.1e-105 385.6 350 54.0
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 1.2e-104 384.0 339 55.8
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 2.0e-104 383.3 350 53.4
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 2.0e-104 383.3 335 55.2
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 2.7e-104 382.9 341 55.4
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 4.6e-104 382.1 351 54.1
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 4.6e-104 382.1 351 54.1
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 5.9e-104 381.7 347 55.6
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 1.1e-102 377.5 352 52.8
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 2.5e-102 376.3 341 50.7
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 7.3e-102 374.8 293 62.1
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 7.8e-96 354.8 335 52.8
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 5.0e-95 352.1 294 56.5
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 5.2e-92 342.0 348 49.1
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 2.0e-91 340.1 337 49.3
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 3.4e-91 339.3 325 49.5
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 5.8e-91 338.6 291 56.0
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 7.5e-91 338.2 338 48.8
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 1.1e-89 334.3 339 48.7
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 6.6e-87 325.1 338 50.0
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 2.4e-81 306.6 250 55.6
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 9.6e-78 294.7 220 60.0
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 1.8e-76 290.4 229 61.6
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 7.6e-75 285.0 296 48.3
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 8.4e-74 281.6 286 46.2
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 8.4e-74 281.6 300 46.0
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 1.1e-73 281.2 285 46.3
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 2.4e-73 280.0 286 44.4
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 6.0e-72 275.4 310 47.1
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 2.8e-69 266.5 293 44.0
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 1.6e-64 250.8 289 42.6
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 9.6e-54 214.9 154 63.0
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 2.4e-52 210.3 190 47.9
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-51 207.6 289 38.1
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.9e-50 203.4 291 38.1
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 8.4e-50 201.8 316 37.7
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-49 201.1 312 36.5
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.8e-47 194.1 294 36.7
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 3.0e-47 193.4 282 35.1
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.7e-45 186.4 248 40.7
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.4e-44 183.7 306 36.6
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.6e-43 180.3 291 36.8
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.6e-43 178.7 339 31.0
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.0e-42 178.3 306 33.7
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.0e-42 176.0 293 36.9
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-41 174.9 236 39.4
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.7e-40 170.2 297 35.7
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 2.7e-40 170.2 284 35.6
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.9e-40 168.7 305 34.1
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 5.7e-38 162.5 294 34.7
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-35 154.5 294 33.3
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.5e-35 152.9 294 33.3
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 8.8e-31 138.7 291 31.3
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 2.2e-29 134.0 316 29.7
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 7.7e-27 125.6 273 32.2
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 7.7e-19 99.0 277 27.8
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 7.0e-12 75.9 63 52.4
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 3.5e-11 73.6 64 56.2
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 1.9e-09 67.8 158 27.8
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 4.2e-09 66.6 74 40.5
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 8.0e-08 62.4 97 35.1
AagrBONN_evm.TU.Sc2ySwM_117.3082 Anthoceros agrestis HOM05D005299 ORTHO05D072579 5.7e-06 56.2 136 26.5


User provided reference genes

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