Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 0.0e+00 2195.2 1141 100.0
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 1.2e-270 937.2 1155 45.5
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 6.0e-270 934.9 1165 46.0
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 3.2e-263 912.5 1162 45.4
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 5.8e-257 891.7 1172 44.7
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 4.9e-256 888.6 1172 44.5
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 3.2e-255 885.9 1172 45.6
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 3.9e-253 879.0 1167 45.3
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 8.1e-251 871.3 1158 44.5
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 2.4e-247 859.8 1175 45.2
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 7.1e-247 858.2 1173 43.5
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 2.4e-242 843.2 1170 44.5
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 5.3e-242 842.0 1171 43.0
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 5.1e-237 825.5 1161 42.2
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 2.1e-235 820.1 1160 41.6
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.0e-232 811.2 1162 42.3
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.0e-229 801.2 1194 41.5
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 1.3e-229 800.8 1195 41.3
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 2.0e-225 786.9 1176 44.0
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 3.2e-223 779.6 1155 41.4
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 3.3e-220 769.6 1165 40.8
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 2.2e-219 766.9 1153 40.6
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 6.3e-219 765.4 1161 41.9
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 3.1e-218 763.1 1188 40.7
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 4.1e-218 762.7 1168 41.0
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 2.6e-217 760.0 1160 41.2
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 1.9e-215 753.8 1161 40.1
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 7.9e-214 748.4 1203 40.1
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 5.1e-213 745.7 1163 39.6
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 4.1e-210 736.1 1093 41.8
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 2.6e-209 733.4 1163 39.8
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 1.2e-206 724.5 1157 39.6
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 1.0e-205 721.5 1159 39.4
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.2e-201 708.0 1168 39.0
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 2.6e-201 706.8 1098 39.8
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 3.5e-201 706.4 1171 40.5
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 1.6e-198 697.6 1183 39.1
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 4.8e-195 686.0 982 42.7
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 6.5e-192 675.6 1159 38.0
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 8.5e-192 675.2 940 41.9
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.1e-191 674.9 1155 38.4
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 1.1e-191 674.9 1152 38.5
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 4.2e-191 672.9 1169 37.0
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 2.1e-190 670.6 1164 37.8
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 3.4e-188 663.3 1170 37.0
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 7.0e-186 655.6 1266 36.2
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 1.6e-185 654.4 1172 37.5
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 2.9e-184 650.2 1177 38.3
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 3.8e-184 649.8 1158 35.6
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 3.8e-184 649.8 1169 38.0
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 5.0e-184 649.4 1169 36.6
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 5.0e-184 649.4 1167 36.4
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 8.5e-184 648.7 1159 37.4
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 2.5e-183 647.1 957 42.2
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 7.2e-183 645.6 1156 35.9
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 8.0e-182 642.1 1164 35.1
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 3.0e-181 640.2 1160 35.3
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 4.0e-181 639.8 1169 34.8
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 2.0e-180 637.5 1166 37.1
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 2.0e-180 637.5 1158 35.8
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 2.6e-180 637.1 1163 35.8
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 1.3e-179 634.8 1178 37.0
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 5.4e-178 629.4 1171 35.9
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 2.0e-177 627.5 907 41.2
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 2.7e-177 627.1 1178 35.7
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 3.5e-177 626.7 1158 36.6
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 5.9e-177 625.9 1162 35.6
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 5.9e-177 625.9 1179 35.5
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 1.7e-176 624.4 1175 35.1
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 7.3e-175 619.0 1158 35.0
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.2e-174 618.2 1178 35.1
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 1.0e-173 615.1 1040 37.6
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 3.0e-173 613.6 1175 34.8
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 3.0e-173 613.6 1175 34.8
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 9.8e-172 608.6 1161 35.7
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 2.9e-171 607.1 1158 37.0
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 6.4e-171 605.9 1163 34.1
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 5.4e-170 602.8 1174 35.0
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 2.3e-168 597.4 1152 34.3
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 1.1e-167 595.1 1169 34.8
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 5.2e-165 586.3 1160 36.1
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 2.4e-162 577.4 1218 34.2
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 7.0e-162 575.9 1184 34.0
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 3.1e-157 560.5 1109 36.5
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 9.2e-154 548.9 1143 34.4
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 1.2e-150 538.5 1151 34.8
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 8.9e-149 532.3 1183 33.5
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 6.0e-145 519.6 944 36.3
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 4.2e-138 496.9 891 37.0
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 5.4e-138 496.5 982 35.2
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 2.8e-134 484.2 1220 30.6
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 1.7e-123 448.4 1264 30.1
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 2.9e-115 421.0 658 39.5
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 3.2e-106 391.0 1252 26.1
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 1.3e-104 385.6 882 31.9
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 4.8e-102 377.1 897 31.2
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 1.5e-87 328.9 807 33.6
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 3.2e-74 284.6 449 39.4
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 1.3e-70 272.7 431 38.5
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 9.1e-69 266.5 1279 24.6
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 2.0e-68 265.4 312 47.4
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 8.9e-64 250.0 306 47.4
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 2.6e-63 248.4 1269 23.6
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 3.4e-63 248.1 331 45.6
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 5.7e-63 247.3 306 46.7
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 9.8e-63 246.5 306 53.9
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.8e-61 242.3 304 46.4
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 2.4e-61 241.9 306 46.1
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 5.0e-59 234.2 241 60.6
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 1.4e-56 226.1 310 44.5
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 4.0e-56 224.6 310 44.2
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 4.0e-56 224.6 411 34.5
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 7.5e-55 220.3 177 64.4
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 1.7e-54 219.2 273 46.2
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 1.4e-48 199.5 1145 23.1
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.3e-46 193.0 241 46.5
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 1.9e-45 189.1 185 55.7
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 1.9e-45 189.1 182 55.5
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 2.4e-45 188.7 361 35.5
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 3.5e-44 184.9 176 56.2
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 3.0e-43 181.8 175 57.7
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 6.6e-43 180.6 175 56.6
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 6.2e-41 174.1 1140 24.1
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 2.0e-39 169.1 172 57.0
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.8e-32 146.0 500 28.2
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 6.4e-30 137.5 300 31.0
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 5.4e-29 134.4 645 23.1
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 7.1e-29 134.0 409 26.4
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 7.3e-26 124.0 226 32.3
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 3.6e-25 121.7 322 29.5
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 6.4e-22 110.9 424 27.6
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 1.9e-21 109.4 250 32.0
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 6.6e-19 100.9 129 46.5
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.6e-17 96.3 237 29.1
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.7e-14 86.3 118 44.9
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 6.4e-14 84.3 120 44.2
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.5e-10 72.4 101 45.5
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 2.1e-09 69.3 48 60.4
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 2.8e-09 68.9 44 65.9
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 6.2e-09 67.8 44 63.6
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 8.1e-09 67.4 126 31.0
Dinv16431 Davidia involucrata HOM05D004959 ORTHO05D005961 7.6e-07 60.8 105 33.3
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 8.4e-06 57.4 74 40.5


User provided reference genes

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