Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3962 Punica granatum HOM05D007135 ORTHO05D008880 4.2e-44 181.0 94 100.0
Duzib132G0527 Durio zibethinus HOM05D007135 ORTHO05D008880 2.1e-32 142.1 94 77.7
COL.COLO4_26047 Corchorus olitorius HOM05D007135 ORTHO05D008880 1.1e-31 139.8 94 76.6
QL11p046458 Quercus lobata HOM05D007135 ORTHO05D008880 1.1e-31 139.8 95 74.7
Thecc.02G074900 Theobroma cacao HOM05D007135 ORTHO05D008880 2.6e-30 135.2 94 75.5
Potri.009G124700 Populus trichocarpa HOM05D007135 ORTHO05D008880 3.4e-30 134.8 92 76.1
Duzib248G1605 Durio zibethinus HOM05D007135 ORTHO05D008880 7.6e-30 133.7 94 75.5
TWI75G0424 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 2.2e-29 132.1 94 73.4
Cpa.g.sc150.16 Carica papaya HOM05D007135 ORTHO05D008880 2.9e-29 131.7 94 73.4
Gorai.005G250000 Gossypium raimondii HOM05D007135 ORTHO05D008880 2.9e-29 131.7 96 74.0
RcHm_v2.0_Chr6g0267951 Rosa chinensis HOM05D007135 ORTHO05D008880 4.9e-29 131.0 95 72.6
Cfa005113 Carpinus fangiana HOM05D007135 ORTHO05D008880 6.4e-29 130.6 96 71.9
Gohir.D02G222000 Gossypium hirsutum HOM05D007135 ORTHO05D008880 6.4e-29 130.6 96 72.9
Potri.004G163100 Populus trichocarpa HOM05D007135 ORTHO05D008880 6.4e-29 130.6 92 71.7
CANSAT11G0395 Cannabis sativa HOM05D007135 ORTHO05D008880 1.1e-28 129.8 101 69.3
Gorai.002G149200 Gossypium raimondii HOM05D007135 ORTHO05D008880 1.4e-28 129.4 96 72.9
MELO3C013419.2 Cucumis melo HOM05D007135 ORTHO05D008880 2.5e-28 128.6 94 72.3
FAN15G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 4.2e-28 127.9 94 73.4
Prupe.8G083700 Prunus persica HOM05D007135 ORTHO05D008880 4.2e-28 127.9 100 68.0
Haze_02238 Corylus avellana HOM05D007135 ORTHO05D008880 5.5e-28 127.5 94 70.2
Atru.chr5.3145 Acer truncatum HOM05D007135 ORTHO05D008880 9.3e-28 126.7 94 72.3
MD10G1062900 Malus domestica HOM05D007135 ORTHO05D008880 1.2e-27 126.3 100 70.0
Gohir.A13G090900 Gossypium hirsutum HOM05D007135 ORTHO05D008880 1.6e-27 125.9 94 71.3
Ciclev10029699m.g Citrus clementina HOM05D007135 ORTHO05D008880 2.1e-27 125.6 94 70.2
FAN27G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 2.1e-27 125.6 94 70.2
Manes.04G083200 Manihot esculenta HOM05D007135 ORTHO05D008880 2.1e-27 125.6 92 72.8
Gohir.A03G200700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 3.5e-27 124.8 96 70.8
Manes.11G081700 Manihot esculenta HOM05D007135 ORTHO05D008880 4.6e-27 124.4 92 70.7
Solyc01g110400.2 Solanum lycopersicum HOM05D007135 ORTHO05D008880 4.6e-27 124.4 94 70.2
Sopen01g052550 Solanum pennellii HOM05D007135 ORTHO05D008880 4.6e-27 124.4 94 70.2
CSS0018566 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 7.9e-27 123.6 92 73.9
FvH4_2g10470 Fragaria vesca HOM05D007135 ORTHO05D008880 7.9e-27 123.6 92 69.6
FAN24G2677 Fragaria x ananassa HOM05D007135 ORTHO05D008880 7.9e-27 123.6 92 69.6
Sed0017056 Sechium edule HOM05D007135 ORTHO05D008880 1.0e-26 123.2 94 70.2
ClCG02G004560 Citrullus lanatus HOM05D007135 ORTHO05D008880 1.3e-26 122.9 94 70.2
Nn5g29239 Nelumbo nucifera HOM05D007135 ORTHO05D008880 1.8e-26 122.5 91 71.4
Cc02_g16900 Coffea canephora HOM05D007135 ORTHO05D008880 2.3e-26 122.1 99 66.7
DCAR_003685 Daucus carota HOM05D007135 ORTHO05D008880 8.7e-26 120.2 96 65.6
CSS0017994 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 1.9e-25 119.0 93 73.1
C08p41660 Brassica napus HOM05D007135 ORTHO05D008880 4.3e-25 117.9 93 66.7
PSO541G1924 Papaver somniferum HOM05D007135 ORTHO05D008880 7.4e-25 117.1 94 64.9
Thhalv10000391m.g Eutrema salsugineum HOM05D007135 ORTHO05D008880 9.6e-25 116.7 101 66.3
MD05G1055600 Malus domestica HOM05D007135 ORTHO05D008880 1.6e-24 115.9 97 64.9
Aqoxy2G03368 Aquilegia oxysepala HOM05D007135 ORTHO05D008880 2.8e-24 115.2 96 66.7
PSO675G0190 Papaver somniferum HOM05D007135 ORTHO05D008880 2.8e-24 115.2 94 64.9
CARHR112160 Cardamine hirsuta HOM05D007135 ORTHO05D008880 3.7e-24 114.8 99 62.6
AL4G10430 Arabidopsis lyrata HOM05D007135 ORTHO05D008880 4.8e-24 114.4 96 65.6
Carub.0004s0033 Capsella rubella HOM05D007135 ORTHO05D008880 8.2e-24 113.6 99 61.6
Aa31LG7G15200 Aethionema arabicum HOM05D007135 ORTHO05D008880 1.1e-23 113.2 94 62.8
AT2G21290 Arabidopsis thaliana HOM05D007135 ORTHO05D008880 1.1e-23 113.2 99 61.6
Gohir.D13G096700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 1.1e-23 113.2 87 72.4
Migut.B00173 Erythranthe guttata HOM05D007135 ORTHO05D008880 1.4e-23 112.8 98 63.3
SalBow6G3736 Salvia bowleyana HOM05D007135 ORTHO05D008880 1.4e-23 112.8 95 67.4
Sp4g00480 Schrenkiella parvula HOM05D007135 ORTHO05D008880 1.4e-23 112.8 99 61.6
CAN.G170.101 Capsicum annuum HOM05D007135 ORTHO05D008880 1.8e-23 112.5 94 62.8
BolC8t51729H Brassica oleracea HOM05D007135 ORTHO05D008880 4.0e-23 111.3 94 68.1
A09p58330 Brassica napus HOM05D007135 ORTHO05D008880 5.3e-23 110.9 94 67.0
BraA09t41224Z Brassica rapa HOM05D007135 ORTHO05D008880 6.9e-23 110.5 93 65.6
unitig_60.g25867 Utricularia gibba HOM05D007135 ORTHO05D008880 6.9e-23 110.5 86 69.8
EL10Ac9g21635 Beta vulgaris HOM05D007135 ORTHO05D008880 1.5e-22 109.4 94 60.6
Dinv26818 Davidia involucrata HOM05D000193 ORTHO05D000402 1.5e-22 109.4 81 71.6
MBI05_g16268_MAGBIO Magnolia biondii HOM05D007135 ORTHO05D008880 1.5e-22 109.4 92 66.3
CiPaw.05G073400 Carya illinoinensis HOM05D007135 ORTHO05D008880 2.0e-22 109.0 81 70.4
Sc08g0000910 Simmondsia chinensis HOM05D007135 ORTHO05D008880 2.0e-22 109.0 105 57.1
vmacro17421 Vaccinium macrocarpon HOM05D007135 ORTHO05D008880 2.6e-22 108.6 81 71.6
Lj1g0005652 Lotus japonicus HOM05D007135 ORTHO05D008880 7.6e-22 107.1 91 65.9
Phvul.009G002700 Phaseolus vulgaris HOM05D007135 ORTHO05D008880 7.6e-22 107.1 94 62.8
BcaC02g08801 Brassica carinata HOM05D007135 ORTHO05D008880 1.3e-21 106.3 93 59.1
BolC4t26651H Brassica oleracea HOM05D007135 ORTHO05D008880 1.3e-21 106.3 93 59.1
C04p50530 Brassica napus HOM05D007135 ORTHO05D008880 1.7e-21 105.9 93 59.1
Lalb_Chr23g0265121 Lupinus albus HOM05D007135 ORTHO05D008880 1.7e-21 105.9 92 64.1
Lalb_Chr23g0265141 Lupinus albus HOM05D007135 ORTHO05D008880 1.7e-21 105.9 92 64.1
Os09g0528100 Oryza sativa ssp. japonica HOM05D007135 ORTHO05D008880 2.2e-21 105.5 83 69.9
BcaB08g34980 Brassica carinata HOM05D007135 ORTHO05D008880 4.9e-21 104.4 91 65.9
BcaC07g41158 Brassica carinata HOM05D007135 ORTHO05D008880 4.9e-21 104.4 92 63.0
TWI79G1445 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 6.5e-21 104.0 82 72.0
Actinidia02247 Actinidia chinensis HOM05D007135 ORTHO05D008880 8.4e-21 103.6 101 58.4
AUR62010386 Chenopodium quinoa HOM05D007135 ORTHO05D008880 8.4e-21 103.6 96 56.2
AUR62016832 Chenopodium quinoa HOM05D007135 ORTHO05D008880 8.4e-21 103.6 96 56.2
A04p16070 Brassica napus HOM05D007135 ORTHO05D008880 1.4e-20 102.8 96 60.4
BraA04t17247Z Brassica rapa HOM05D007135 ORTHO05D008880 1.4e-20 102.8 96 60.4
Rhsim05G0068200 Rhododendron simsii HOM05D007135 ORTHO05D008880 1.4e-20 102.8 82 70.7
Sabra04G0109400 Salix brachista HOM05D007135 ORTHO05D008880 2.5e-20 102.1 77 68.8
SHI05613 Sapria himalayana HOM05D007135 ORTHO05D008880 2.5e-20 102.1 54 85.2
ATR0149G014 Amborella trichopoda HOM05D007135 ORTHO05D008880 3.2e-20 101.7 95 61.1
Psat5g003840 Pisum sativum HOM05D007135 ORTHO05D008880 3.2e-20 101.7 94 61.7
TAR381G0296 Trochodendron aralioides HOM05D007135 ORTHO05D008880 4.2e-20 101.3 80 67.5
Ca_15331_v3 Cicer arietinum L. HOM05D007135 ORTHO05D008880 1.2e-19 99.8 86 61.6
Nitab4.5_0005932g0010 Nicotiana tabacum HOM05D007135 ORTHO05D008880 1.2e-19 99.8 82 67.1
TPR.G32169 Trifolium pratense HOM05D007135 ORTHO05D008880 1.2e-19 99.8 88 62.5
Medtr3g117570 Medicago truncatula HOM05D007135 ORTHO05D008880 1.6e-19 99.4 86 59.3
Sabra09G0095700 Salix brachista HOM05D007135 ORTHO05D008880 2.1e-19 99.0 77 68.8
GSVIVG01024170001 Vitis vinifera HOM05D007135 ORTHO05D008880 2.1e-19 99.0 81 69.1
Duzib052G0169 Durio zibethinus HOM05D007135 ORTHO05D008880 2.7e-19 98.6 78 66.7
ECA234G2991 Erigeron canadensis HOM05D007135 ORTHO05D008880 3.5e-19 98.2 54 85.2
Nitab4.5_0005266g0060 Nicotiana tabacum HOM05D007135 ORTHO05D008880 3.5e-19 98.2 87 66.7
Ah.01g018800 Amaranthus hybridus HOM05D007135 ORTHO05D008880 1.8e-18 95.9 95 56.8
CsaV3_7G000400 Cucumis sativus L. HOM05D007135 ORTHO05D008880 6.7e-18 94.0 79 67.1
THA.LOC104824791 Tarenaya hassleriana HOM05D007135 ORTHO05D008880 2.5e-17 92.0 83 65.1
FAN20G0703 Fragaria x ananassa HOM05D007135 ORTHO05D008880 3.1e-15 85.1 82 61.0
Peaxi162Scf00016g00015 Petunia axillaris HOM05D007135 ORTHO05D008880 5.3e-15 84.3 46 89.1
Haze_15927 Corylus avellana HOM05D018783 ORTHO05D008880 4.5e-14 81.3 61 68.9
Glyma.04G007900 Glycine max HOM05D007135 ORTHO05D008880 5.9e-14 80.9 83 56.6
Haze_08383 Corylus avellana HOM05D007135 ORTHO05D008880 2.2e-13 79.0 50 82.0
Zm00001eb103340 Zea mays HOM05D007135 ORTHO05D008880 5.0e-13 77.8 77 61.0
HPP92_008881 Vanilla planifolia HOM05D007135 ORTHO05D008880 8.5e-13 77.0 41 85.4
Glyma.06G007700 Glycine max HOM05D007135 ORTHO05D008880 1.1e-12 76.6 80 57.5
HanXRQChr10g0294181 Helianthus annuus HOM05D007135 ORTHO05D008880 1.4e-12 76.3 82 53.7
Lsat_1_v5_gn_4_67341 Lactuca sativa HOM05D007135 ORTHO05D008880 1.4e-12 76.3 81 53.1
RhsimUnG0003900 Rhododendron simsii HOM05D004431 ORTHO05D005053 9.7e-09 63.5 42 78.6
RhsimUnG0067300 Rhododendron simsii HOM05D004431 ORTHO05D005053 9.7e-09 63.5 42 78.6


User provided reference genes

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