Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 0.0e+00 1450.6 752 100.0
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 0.0e+00 1093.6 755 74.7
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 8.1e-300 1033.5 763 71.2
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 1.2e-298 1029.6 761 71.7
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 5.8e-298 1027.3 754 71.5
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 1.3e-294 1016.1 754 69.4
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 6.7e-294 1013.8 750 71.2
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 8.2e-292 1006.9 756 68.9
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 1.1e-288 996.5 753 69.9
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.1e-285 986.5 750 68.5
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 2.5e-285 985.3 760 68.4
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 5.7e-285 984.2 760 68.7
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 1.3e-284 983.0 760 68.3
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.6e-284 982.6 754 68.2
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.6e-284 982.6 812 65.4
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 5.3e-283 977.6 751 67.9
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 2.6e-282 975.3 759 66.7
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 5.9e-282 974.2 783 66.7
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 7.6e-282 973.8 749 67.3
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 1.3e-281 973.0 720 71.0
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 2.1e-279 965.7 791 64.7
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 3.0e-278 961.8 752 66.0
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 4.3e-277 958.0 751 66.7
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 5.7e-277 957.6 751 66.8
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 2.2e-276 955.7 751 67.0
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 2.2e-276 955.7 793 64.3
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 7.7e-274 947.2 754 66.6
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 1.9e-272 942.6 751 66.3
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 5.5e-272 941.0 760 65.8
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 3.9e-270 934.9 757 64.3
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 5.1e-270 934.5 753 64.5
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 1.1e-269 933.3 751 64.6
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 4.4e-269 931.4 751 64.3
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 4.8e-268 927.9 754 63.8
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 1.4e-267 926.4 777 62.7
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.8e-267 926.0 751 65.0
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 2.4e-267 925.6 751 63.8
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 2.4e-267 925.6 752 65.2
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 6.9e-267 924.1 751 64.3
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 1.7e-265 919.5 755 64.4
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 3.8e-265 918.3 824 61.4
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 6.5e-265 917.5 753 65.2
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 1.9e-264 916.0 781 61.8
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 7.9e-263 910.6 748 64.6
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 1.4e-262 909.8 775 63.6
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 1.8e-262 909.4 750 64.1
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 3.9e-262 908.3 753 63.6
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 1.5e-261 906.4 748 61.6
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 2.9e-257 892.1 751 63.2
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.1e-256 890.2 789 59.9
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 4.2e-256 888.3 760 62.8
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 2.7e-255 885.6 748 63.1
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 1.4e-254 883.2 758 62.5
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 1.8e-254 882.9 750 62.1
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.7e-252 876.3 751 60.5
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 8.2e-252 874.0 717 65.0
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 2.0e-250 869.4 763 61.1
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 1.0e-249 867.1 756 60.8
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 4.2e-248 861.7 699 64.4
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 4.7e-247 858.2 927 55.8
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 8.0e-247 857.4 778 59.1
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 3.0e-246 855.5 753 60.0
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 7.5e-245 850.9 747 59.7
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.7e-244 849.7 755 59.5
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 1.6e-242 843.2 774 57.5
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 3.5e-242 842.0 753 58.7
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 5.9e-242 841.3 777 59.3
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 5.0e-241 838.2 696 62.5
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 1.5e-240 836.6 749 59.5
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 1.2e-239 833.6 774 57.4
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 1.2e-239 833.6 788 57.4
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 5.2e-238 828.2 753 58.7
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 3.4e-237 825.5 770 56.0
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 8.6e-233 810.8 751 57.1
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 3.2e-227 792.3 753 58.3
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 1.3e-225 786.9 775 53.5
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 5.0e-225 785.0 735 56.6
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 5.0e-225 785.0 753 58.2
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 1.1e-224 783.9 746 55.9
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 1.2e-223 780.4 746 55.9
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 2.8e-223 779.2 752 56.0
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 3.6e-223 778.9 746 56.3
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 3.1e-222 775.8 751 55.4
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 5.8e-221 771.5 735 55.8
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 9.8e-221 770.8 648 65.0
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 8.9e-214 747.7 751 54.5
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 4.1e-211 738.8 737 52.1
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 2.7e-210 736.1 782 52.9
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 1.7e-209 733.4 753 55.6
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 1.9e-203 713.4 751 53.0
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 5.8e-197 691.8 738 52.2
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.1e-190 671.0 434 75.8
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 9.3e-187 657.9 621 57.0
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 1.5e-184 650.6 758 50.1
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 1.5e-184 650.6 758 50.1
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 1.5e-184 650.6 758 50.1
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 7.4e-184 648.3 741 48.0
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 9.3e-179 631.3 715 50.3
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 2.1e-175 620.2 832 44.8
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 1.7e-172 610.5 607 55.5
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 3.2e-171 606.3 545 61.3
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 1.8e-169 600.5 702 48.3
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 3.4e-165 586.3 399 73.7
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 8.5e-164 581.6 503 63.4
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 5.5e-163 578.9 618 54.4
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 6.7e-161 572.0 587 50.9
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 2.0e-160 570.5 734 43.2
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.4e-155 554.3 443 62.5
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 2.0e-144 517.3 544 53.5
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.0e-140 505.0 494 56.5
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 8.0e-122 442.2 260 81.9
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 7.5e-120 435.6 578 46.4
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 4.4e-104 383.3 532 44.4
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 1.9e-86 324.7 354 50.3
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 2.4e-78 297.7 232 67.2
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 9.3e-78 295.8 194 72.7
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 2.6e-64 251.1 171 70.8
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.6e-53 215.3 161 63.4
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 4.1e-49 200.7 183 56.3
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 1.2e-48 199.1 142 64.8
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.5e-48 198.7 118 80.5
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 1.8e-44 185.3 130 64.6
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 3.0e-44 184.5 143 60.1
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 5.0e-39 167.2 99 80.8
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.8e-36 158.7 114 71.9
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 5.3e-33 147.1 86 82.6
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 4.2e-30 137.5 152 42.1
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 2.1e-29 135.2 213 39.4
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 2.7e-29 134.8 401 27.9
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 3.7e-26 124.4 74 79.7
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 1.1e-25 122.9 117 53.8
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 7.7e-24 116.7 543 22.3
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 5.0e-23 114.0 85 63.5
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 1.6e-21 109.0 87 57.5
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 1.6e-21 109.0 87 57.5
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 8.8e-20 103.2 151 38.4
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.5e-11 75.9 47 78.7
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 2.6e-11 75.1 58 60.3
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 9.8e-11 73.2 514 23.7
Hund07844 Selenicereus undatus HOM05D004031 ORTHO05D006678 1.1e-09 69.7 65 56.9
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 1.7e-07 62.4 70 52.9


User provided reference genes

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