Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3838 Punica granatum HOM05D006034 ORTHO05D007535 3.1e-158 562.0 335 100.0
Potri.006G150200 Populus trichocarpa HOM05D006034 ORTHO05D007535 7.2e-107 391.3 334 61.4
Gohir.A06G071400 Gossypium hirsutum HOM05D006034 ORTHO05D007535 8.0e-106 387.9 337 62.0
CiPaw.03G217800 Carya illinoinensis HOM05D006034 ORTHO05D007535 5.2e-105 385.2 339 65.8
Eucgr.C00910 Eucalyptus grandis HOM05D006034 ORTHO05D007535 6.8e-105 384.8 339 66.4
Gohir.D06G070100 Gossypium hirsutum HOM05D006034 ORTHO05D007535 2.0e-104 383.3 337 62.6
Gorai.010G081700 Gossypium raimondii HOM05D006034 ORTHO05D007535 4.4e-104 382.1 337 62.9
Sabra06G0118900 Salix brachista HOM05D006034 ORTHO05D007535 1.3e-103 380.6 337 65.9
FAN26G1667 Fragaria x ananassa HOM05D006034 ORTHO05D007535 3.1e-102 375.9 295 70.5
Ciclev10008848m.g Citrus clementina HOM05D006034 ORTHO05D007535 2.0e-101 373.2 340 58.8
RcHm_v2.0_Chr2g0093061 Rosa chinensis HOM05D006034 ORTHO05D007535 1.3e-100 370.5 295 70.2
COL.COLO4_18220 Corchorus olitorius HOM05D006034 ORTHO05D001756 5.0e-100 368.6 303 66.0
FvH4_1g22100 Fragaria vesca HOM05D006034 ORTHO05D007535 8.6e-100 367.9 258 69.4
FAN19G2130 Fragaria x ananassa HOM05D006034 ORTHO05D007535 8.6e-100 367.9 258 69.4
QL02p062983 Quercus lobata HOM05D006034 ORTHO05D007535 8.6e-100 367.9 254 74.8
Migut.J00593 Erythranthe guttata HOM05D006034 ORTHO05D007535 9.5e-99 364.4 337 56.1
GSVIVG01015225001 Vitis vinifera HOM05D006034 ORTHO05D007535 9.5e-99 364.4 326 64.4
MD02G1076200 Malus domestica HOM05D006034 ORTHO05D007535 2.1e-98 363.2 326 63.2
Carub.0007s1101 Capsella rubella HOM05D006034 ORTHO05D007535 2.8e-98 362.8 337 66.2
Prupe.7G212400 Prunus persica HOM05D006034 ORTHO05D007535 1.0e-97 360.9 298 68.8
HanXRQChr12g0354751 Helianthus annuus HOM05D006034 ORTHO05D007535 1.8e-97 360.1 334 53.6
Manes.03G032201 Manihot esculenta HOM05D006034 ORTHO05D007535 2.3e-97 359.8 339 65.5
MD15G1204600 Malus domestica HOM05D006034 ORTHO05D007535 4.0e-97 359.0 316 63.6
TAR636G0081 Trochodendron aralioides HOM05D006034 ORTHO05D007535 8.8e-97 357.8 256 66.0
Lj7C673T11 Lonicera japonica HOM05D006034 ORTHO05D007535 1.5e-96 357.1 258 72.1
CAN.G1241.18 Capsicum annuum HOM05D006034 ORTHO05D007535 2.6e-96 356.3 302 66.6
PGSC0003DMG400000341 Solanum tuberosum HOM05D006034 ORTHO05D007535 5.7e-96 355.1 316 61.4
THA.LOC104827538 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 9.8e-96 354.4 297 76.1
BraA08t33919Z Brassica rapa HOM05D006034 ORTHO05D007535 1.2e-93 347.4 340 70.3
BolC3t21232H Brassica oleracea HOM05D006034 ORTHO05D007535 2.0e-93 346.7 336 71.1
Sp7g27400 Schrenkiella parvula HOM05D006034 ORTHO05D007535 2.7e-93 346.3 340 69.7
C03p89230 Brassica napus HOM05D006034 ORTHO05D007535 3.5e-93 345.9 336 70.8
Lj2g0022455 Lotus japonicus HOM05D006034 ORTHO05D007535 4.5e-93 345.5 338 55.9
Oeu021834.2 Olea europaea HOM05D006034 ORTHO05D007535 5.9e-93 345.1 327 67.0
Sopen12g003720 Solanum pennellii HOM05D006034 ORTHO05D007535 5.9e-93 345.1 256 66.4
A08p19610 Brassica napus HOM05D006034 ORTHO05D007535 7.8e-93 344.7 325 69.2
BcaC01g01176 Brassica carinata HOM05D006034 ORTHO05D007535 1.0e-92 344.4 340 70.6
Lsat_1_v5_gn_5_145641 Lactuca sativa HOM05D006034 ORTHO05D007535 1.3e-92 344.0 328 57.3
BcaB03g12611 Brassica carinata HOM05D006034 ORTHO05D007535 2.9e-92 342.8 335 69.9
CARHR237370 Cardamine hirsuta HOM05D006034 ORTHO05D007535 3.8e-92 342.4 337 68.5
PSO210G1139 Papaver somniferum HOM05D006034 ORTHO05D007535 1.1e-91 340.9 335 60.6
FAN23G1099 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.5e-91 340.5 258 66.7
Glyma.07G128800 Glycine max HOM05D006034 ORTHO05D007535 1.5e-91 340.5 313 59.4
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 1.5e-91 340.5 337 57.0
Cc06_g11190 Coffea canephora HOM05D006034 ORTHO05D007535 2.5e-91 339.7 329 57.8
AL7G22860 Arabidopsis lyrata HOM05D006034 ORTHO05D007535 5.6e-91 338.6 336 68.8
THA.LOC104807985 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 5.6e-91 338.6 324 60.5
arahy.Tifrunner.gnm1.ann1.JYMB6X Arachis hypogaea HOM05D006034 ORTHO05D007535 3.6e-90 335.9 299 65.2
PSO210G3620 Papaver somniferum HOM05D006034 ORTHO05D007535 8.0e-90 334.7 340 57.9
arahy.Tifrunner.gnm1.ann1.VJWZ4U Arachis hypogaea HOM05D006034 ORTHO05D007535 1.0e-89 334.3 299 64.2
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 2.3e-89 333.2 258 60.9
MELO3C015455.2 Cucumis melo HOM05D006034 ORTHO05D007535 3.4e-88 329.3 294 59.9
Lalb_Chr24g0393801 Lupinus albus HOM05D006034 ORTHO05D007535 5.7e-88 328.6 293 58.7
Aqoxy7G04066 Aquilegia oxysepala HOM05D006034 ORTHO05D007535 9.8e-88 327.8 321 51.7
ATR0705G153 Amborella trichopoda HOM05D006034 ORTHO05D007535 1.8e-86 323.6 313 57.8
Medtr4g036675 Medicago truncatula HOM05D006034 ORTHO05D007535 4.1e-86 322.4 321 55.1
TPR.G35498 Trifolium pratense HOM05D006034 ORTHO05D007535 1.2e-85 320.9 330 54.2
AUR62031326 Chenopodium quinoa HOM05D006034 ORTHO05D007535 1.0e-84 317.8 238 63.9
Os01g0722100 Oryza sativa ssp. japonica HOM05D006034 ORTHO05D007535 1.7e-84 317.0 317 59.0
VMungo0464G0679 Vigna mungo HOM05D006034 ORTHO05D007535 2.5e-83 313.2 298 57.4
Sed0009633 Sechium edule HOM05D006034 ORTHO05D007535 5.6e-83 312.0 240 64.2
Actinidia25263 Actinidia chinensis HOM05D006034 ORTHO05D007535 1.2e-82 310.8 312 65.1
Mapoly0014s0071 Marchantia polymorpha HOM05D006034 ORTHO05D007535 2.1e-82 310.1 334 47.6
TWI32G0461 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 2.8e-82 309.7 280 62.9
Psat1g049600 Pisum sativum HOM05D006034 ORTHO05D007535 3.1e-81 306.2 240 62.9
Aa31LG2G20940 Aethionema arabicum HOM05D006034 ORTHO05D007535 4.9e-79 298.9 380 58.7
Pp3c5_18660 Physcomitrium patens HOM05D006034 ORTHO05D007535 1.1e-78 297.7 296 57.1
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 9.2e-78 294.7 251 54.2
SEGI_04673 Sequoiadendron giganteum HOM05D006034 ORTHO05D007535 6.6e-76 288.5 255 54.5
CsaV3_1G040270 Cucumis sativus L. HOM05D006034 ORTHO05D007535 4.3e-75 285.8 218 61.9
Zm00001eb361670 Zea mays HOM05D006034 ORTHO05D007535 4.7e-74 282.3 323 50.8
FAN28G0362 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.4e-73 280.8 212 66.0
BcaC09g51741 Brassica carinata HOM05D000577 ORTHO05D007535 3.4e-72 276.2 241 70.1
Hma1.2p1_0800F.1_g219990 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 8.3e-71 271.6 189 72.0
Atru.chr7.1566 Acer truncatum HOM05D006034 ORTHO05D007535 1.9e-70 270.4 261 75.5
SMO118G0489 Selaginella moellendorffii HOM05D006034 ORTHO05D007535 2.1e-69 266.9 293 52.6
Nn8g38904 Nelumbo nucifera HOM05D006034 ORTHO05D007535 2.7e-69 266.5 328 50.3
Duzib150G0162 Durio zibethinus HOM05D006034 ORTHO05D007535 4.6e-69 265.8 310 55.5
Solyc12g008790.3 Solanum lycopersicum HOM05D006034 ORTHO05D007535 4.6e-69 265.8 247 65.2
EL10Ac8g19307 Beta vulgaris HOM05D006034 ORTHO05D007535 1.3e-68 264.2 241 67.2
Thhalv10025613m.g Eutrema salsugineum HOM05D006034 ORTHO05D007535 1.5e-67 260.8 331 56.5
Thecc.09G091900 Theobroma cacao HOM05D006034 ORTHO05D007535 1.5e-67 260.8 206 67.5
CBR_g36936 Chara braunii HOM05D006034 ORTHO05D007535 1.9e-67 260.4 252 54.4
MSTRG.19527 Avicennia marina HOM05D006034 ORTHO05D007535 5.6e-67 258.8 205 61.0
Glyma.01G003200 Glycine max HOM05D006034 ORTHO05D007535 2.6e-64 250.0 206 63.6
SalBow6G0258 Salvia bowleyana HOM05D006034 ORTHO05D007535 4.9e-63 245.7 295 50.2
Haze_25892 Corylus avellana HOM05D006034 ORTHO05D007535 7.1e-62 241.9 326 56.1
AagrBONN_evm.TU.Sc2ySwM_228.1841 Anthoceros agrestis HOM05D006034 ORTHO05D007535 1.7e-60 237.3 327 45.3
vmacro17221 Vaccinium macrocarpon HOM05D006034 ORTHO05D007535 2.4e-57 226.9 328 48.2
ClCG03G015740 Citrullus lanatus HOM05D000085 ORTHO05D001756 6.4e-55 218.8 317 45.7
DCAR_011988 Daucus carota HOM05D006034 ORTHO05D007535 1.3e-52 211.1 326 43.3
Hund24744 Selenicereus undatus HOM05D006034 ORTHO05D007535 1.3e-52 211.1 353 47.0
Sed0024135 Sechium edule HOM05D006034 ORTHO05D007535 1.9e-51 207.2 155 67.1
CsaV3_UNG066530 Cucumis sativus L. HOM05D006034 ORTHO05D007535 4.3e-51 206.1 155 61.9
Nitab4.5_0000540g0250 Nicotiana tabacum HOM05D006034 ORTHO05D007535 2.1e-50 203.8 338 43.8
CDE05G1399 Ceratophyllum demersum HOM05D006034 ORTHO05D007535 2.4e-49 200.3 249 42.6
Nitab4.5_0011903g0020 Nicotiana tabacum HOM05D006034 ORTHO05D007535 6.9e-49 198.7 255 50.6
Ca_25619_v3 Cicer arietinum L. HOM05D006034 ORTHO05D007535 1.3e-47 194.5 230 51.7
Sc18g0001930 Simmondsia chinensis HOM05D006034 ORTHO05D007535 1.1e-46 191.4 269 52.4
Rhsim05G0022600 Rhododendron simsii HOM05D000085 ORTHO05D001756 1.9e-46 190.7 242 56.2
AUR62027411 Chenopodium quinoa HOM05D006034 ORTHO05D007535 3.5e-45 186.4 191 51.8
C01p09940 Brassica napus HOM05D000577 ORTHO05D007535 9.0e-41 171.8 259 41.7
Phvul.004G171500 Phaseolus vulgaris HOM05D006034 ORTHO05D007535 2.0e-40 170.6 195 58.5
CSS0015474 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 7.6e-40 168.7 182 73.6
MD13G1273400 Malus domestica HOM05D006034 ORTHO05D007535 7.6e-40 168.7 132 63.6
C01p09780 Brassica napus HOM05D006034 ORTHO05D007535 8.4e-39 165.2 209 48.8
AT4G29540 Arabidopsis thaliana HOM05D006034 ORTHO05D007535 9.3e-38 161.8 205 71.2
MBI01_g02257_MAGBIO Magnolia biondii HOM05D006034 ORTHO05D007535 3.5e-37 159.8 301 34.9
Hma1.2p1_0800F.1_g219980 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 4.6e-37 159.5 167 62.9
PRCOL_00006271 Prasinoderma coloniale HOM05D006034 ORTHO05D007535 3.9e-36 156.4 254 37.0
Peaxi162Scf00498g00128 Petunia axillaris HOM05D006034 ORTHO05D007535 8.7e-36 155.2 126 73.0
BolC1t00956H Brassica oleracea HOM05D000577 ORTHO05D001093 1.5e-32 144.4 259 37.8
TWI34G0201 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 2.6e-32 143.7 88 70.5
THA.LOC104814611 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 4.5e-32 142.9 232 39.7
CSS0007101 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 2.9e-31 140.2 105 63.8
arahy.Tifrunner.gnm1.ann1.N9NTP8 Arachis hypogaea HOM05D000344 ORTHO05D005296 3.8e-31 139.8 110 60.9
arahy.Tifrunner.gnm1.ann1.ZF8ARW Arachis hypogaea HOM05D006034 ORTHO05D007535 2.1e-29 134.0 91 67.0
arahy.Tifrunner.gnm1.ann1.9T8A1S Arachis hypogaea HOM05D006034 ORTHO05D007535 1.3e-28 131.3 91 65.9
arahy.Tifrunner.gnm1.ann1.4X02I9 Arachis hypogaea HOM05D006034 ORTHO05D007535 3.0e-28 130.2 91 67.0
BcaC09g52218 Brassica carinata HOM05D006034 ORTHO05D007535 7.6e-24 115.5 86 67.4
THA.LOC109116077 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 5.5e-22 109.4 97 54.6
BolC1t00940H Brassica oleracea HOM05D006034 ORTHO05D007535 4.8e-18 96.3 146 39.7
MD17G1181800 Malus domestica HOM05D006034 ORTHO05D007535 8.2e-18 95.5 56 80.4
arahy.Tifrunner.gnm1.ann1.UHY7MZ Arachis hypogaea HOM05D006034 ORTHO05D005279 1.5e-16 91.3 70 64.3
unitig_27.g24727 Utricularia gibba HOM05D006034 ORTHO05D007535 1.5e-16 91.3 74 54.1
Hma1.2p1_0800F.1_g220000 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 2.6e-16 90.5 68 61.8
Ca_29456_v3 Cicer arietinum L. HOM05D003386 ORTHO05D007535 7.7e-16 89.0 221 29.0
arahy.Tifrunner.gnm1.ann1.RIAB4B Arachis hypogaea HOM05D006034 ORTHO05D007535 3.8e-15 86.7 51 76.5
C01p09900 Brassica napus HOM05D006034 ORTHO05D007535 7.2e-14 82.4 71 60.6
CsaV3_UNG066540 Cucumis sativus L. HOM05D006034 ORTHO05D007535 4.7e-13 79.7 62 59.7
Dinv36751 Davidia involucrata HOM05D006034 ORTHO05D007535 3.7e-10 70.1 53 58.5
arahy.Tifrunner.gnm1.ann1.C7GQ4M Arachis hypogaea HOM05D006034 ORTHO05D007535 4.8e-10 69.7 55 60.0
Haze_27155 Corylus avellana HOM05D003386 ORTHO05D007535 1.2e-08 65.1 209 32.5
C01p09890 Brassica napus HOM05D006034 ORTHO05D041974 2.5e-06 57.4 43 69.8
BraA01t00799Z Brassica rapa HOM05D006034 ORTHO05D007535 4.2e-06 56.6 121 35.5


User provided reference genes

Program Settings